Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 3.4e-118 428.3 212 100.0
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 2.6e-102 375.6 212 86.3
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 9.2e-100 367.1 191 93.7
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.6e-99 366.3 212 85.4
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 4.6e-99 364.8 212 82.5
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.7e-98 362.8 199 89.4
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 5.1e-98 361.3 212 84.4
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.5e-97 359.8 209 84.7
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.9e-97 359.4 212 84.4
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 3.3e-97 358.6 205 83.9
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 4.3e-97 358.2 205 83.4
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 1.6e-96 356.3 212 81.1
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 2.8e-96 355.5 209 83.7
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 1.1e-95 353.6 212 82.1
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 4.0e-95 351.7 212 82.1
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 2.0e-94 349.4 212 80.7
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 5.8e-94 347.8 212 82.5
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 2.2e-93 345.9 209 82.3
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 2.9e-93 345.5 227 75.3
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 1.7e-90 336.3 205 80.5
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 7.3e-89 330.9 210 77.6
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.3e-88 330.1 212 78.8
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.3e-88 330.1 210 77.1
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 2.1e-88 329.3 210 77.1
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 1.4e-87 326.6 210 77.1
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.8e-87 326.2 213 75.6
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 4.4e-86 321.6 205 76.6
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 7.6e-86 320.9 210 73.8
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 3.8e-85 318.5 210 74.8
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 1.1e-84 317.0 210 74.8
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 2.4e-84 315.8 210 72.9
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 3.2e-84 315.5 210 74.8
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 4.2e-84 315.1 212 72.2
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 4.2e-84 315.1 213 74.2
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 9.3e-84 313.9 210 73.8
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 9.3e-84 313.9 210 73.8
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 9.3e-84 313.9 210 73.8
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 9.3e-84 313.9 210 73.8
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.6e-83 313.2 212 72.2
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 3.5e-83 312.0 205 74.6
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 3.5e-83 312.0 213 72.8
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 7.9e-83 310.8 212 72.2
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 1.3e-82 310.1 205 74.1
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 1.3e-82 310.1 205 74.6
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.7e-82 309.7 210 73.3
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 1.7e-82 309.7 210 73.3
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.7e-82 309.7 205 73.7
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 2.3e-82 309.3 210 71.4
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 3.0e-82 308.9 205 73.2
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 5.1e-82 308.1 205 73.7
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 6.6e-82 307.8 213 72.3
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 1.1e-81 307.0 208 72.6
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 1.5e-81 306.6 211 73.0
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 1.5e-81 306.6 213 72.3
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 3.3e-81 305.4 213 71.4
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.3e-81 305.1 213 71.8
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.3e-81 305.1 213 71.8
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 7.3e-81 304.3 217 69.1
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.3e-80 303.5 213 71.4
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 1.3e-80 303.5 212 70.3
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.6e-80 303.1 205 73.2
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.1e-80 302.8 213 71.4
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 2.1e-80 302.8 213 69.5
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 6.2e-80 301.2 210 70.0
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 8.1e-80 300.8 213 69.0
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.8e-79 299.7 214 72.0
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 1.8e-79 299.7 213 68.5
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.8e-79 299.7 213 70.4
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.1e-79 298.9 208 71.2
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 5.3e-79 298.1 208 71.2
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.0e-78 296.2 206 71.4
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 2.6e-78 295.8 216 68.5
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 7.6e-78 294.3 212 69.3
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 2.2e-77 292.7 212 69.8
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 2.9e-77 292.4 195 71.8
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 3.8e-77 292.0 212 68.4
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 3.8e-77 292.0 206 68.9
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 8.4e-77 290.8 212 68.4
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 2.4e-76 289.3 194 71.6
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 4.2e-76 288.5 212 67.9
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 5.4e-76 288.1 212 67.5
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 9.3e-76 287.3 212 67.9
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 1.2e-75 287.0 212 67.5
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 2.7e-75 285.8 212 67.9
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 6.0e-75 284.6 216 67.1
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 1.0e-74 283.9 181 76.8
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 1.3e-74 283.5 205 67.8
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 1.3e-74 283.5 212 67.9
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 1.8e-74 283.1 212 67.0
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 3.9e-74 282.0 212 66.5
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 3.9e-74 282.0 213 69.5
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 3.9e-74 282.0 213 69.5
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 3.9e-74 282.0 213 69.5
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 5.1e-74 281.6 201 68.2
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 5.1e-74 281.6 212 66.5
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 6.7e-74 281.2 205 67.8
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 7.4e-73 277.7 213 68.5
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 2.8e-72 275.8 208 63.5
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 3.1e-71 272.3 191 72.3
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 4.0e-71 271.9 193 69.9
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.6e-70 269.2 237 61.2
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 3.4e-70 268.9 214 61.2
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 3.8e-69 265.4 184 66.8
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.7e-67 259.2 186 66.7
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.0e-66 257.3 200 67.5
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.1e-65 253.8 210 63.8
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 7.4e-65 251.1 155 78.7
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 2.4e-63 246.1 214 63.1
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.0e-58 230.7 144 75.7
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 4.8e-56 221.9 167 58.7
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.0e-50 204.1 212 53.8
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.1e-49 200.7 207 51.2
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.2e-43 180.6 113 73.5
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 3.6e-43 179.1 136 71.3
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 3.0e-34 149.4 179 41.3
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 6.3e-32 141.7 171 45.6
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.8e-31 140.2 79 79.7
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 5.9e-30 135.2 171 44.4
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 2.1e-27 126.7 114 48.2
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 1.3e-24 117.5 63 79.4
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 2.2e-21 106.7 105 52.4
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 4.2e-20 102.4 186 38.2
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 6.8e-18 95.1 50 82.0
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 2.0e-17 93.6 92 62.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 8.3e-16 88.2 71 60.6
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 5.9e-14 82.0 59 67.8
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 4.3e-12 75.9 83 49.4
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 5.6e-12 75.5 55 67.3
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 1.6e-11 73.9 78 48.7
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 5.2e-10 68.9 150 35.3
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 2.6e-09 66.6 47 70.2
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 2.2e-08 63.5 41 73.2
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.4e-07 60.8 40 72.5


User provided reference genes

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