Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07212 Nelumbo nucifera HOM05D000050 ORTHO05D000771 5.7e-83 310.8 155 100.0
Nn1g03464 Nelumbo nucifera HOM05D000050 ORTHO05D000771 4.8e-21 105.1 91 58.2
Potri.002G227800 Populus trichocarpa HOM05D000050 ORTHO05D000771 1.9e-17 93.2 185 35.1
TAR626G0904 Trochodendron aralioides HOM05D000050 ORTHO05D000771 1.6e-16 90.1 90 56.7
GSVIVG01030451001 Vitis vinifera HOM05D000050 ORTHO05D000771 3.5e-16 89.0 85 52.9
Cfa014372 Carpinus fangiana HOM05D000050 ORTHO05D000771 7.9e-16 87.8 93 53.8
Haze_12816 Corylus avellana HOM05D000050 ORTHO05D000771 3.9e-15 85.5 91 51.6
DCAR_012940 Daucus carota HOM05D000050 ORTHO05D000771 1.1e-14 84.0 92 50.0
TWI36G1556 Tripterygium wilfordii HOM05D000050 ORTHO05D000771 5.7e-14 81.6 89 48.3
Cfa014366 Carpinus fangiana HOM05D000050 ORTHO05D000771 7.4e-14 81.3 93 50.5
CSS0020607 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D000771 9.7e-14 80.9 105 46.7
GSVIVG01009814001 Vitis vinifera HOM05D000050 ORTHO05D000771 1.6e-13 80.1 105 44.8
CSS0005614 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D000771 2.8e-13 79.3 106 43.4
CiPaw.03G158600 Carya illinoinensis HOM05D000050 ORTHO05D000771 2.8e-13 79.3 93 48.4
CSS0019041 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D000771 3.7e-13 79.0 108 45.4
CSS0030987 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D000771 3.7e-13 79.0 106 44.3
Lsat_1_v5_gn_9_107121 Lactuca sativa HOM05D000050 ORTHO05D000771 3.7e-13 79.0 110 43.6
Lsat_1_v5_gn_5_124161 Lactuca sativa HOM05D000050 ORTHO05D000771 8.2e-13 77.8 104 45.2
TAR624G0336 Trochodendron aralioides HOM05D000050 ORTHO05D000771 8.2e-13 77.8 78 56.4
DCAR_012941 Daucus carota HOM05D000050 ORTHO05D000771 1.8e-12 76.6 80 50.0
ECA234G0962 Erigeron canadensis HOM05D000050 ORTHO05D000771 2.4e-12 76.3 61 57.4
PGR142G4464 Punica granatum HOM05D000050 ORTHO05D000771 1.2e-11 73.9 78 47.4
Aqoxy1G03339 Aquilegia oxysepala HOM05D000050 ORTHO05D000771 1.5e-11 73.6 120 41.7
Peaxi162Scf00007g00514 Petunia axillaris HOM05D000050 ORTHO05D000771 1.5e-11 73.6 75 49.3
Ciclev10017595m.g Citrus clementina HOM05D000050 ORTHO05D000771 2.0e-11 73.2 93 46.2
Medtr3g112530 Medicago truncatula HOM05D000050 ORTHO05D000771 2.0e-11 73.2 92 46.7
Actinidia03603 Actinidia chinensis HOM05D000050 ORTHO05D000771 2.6e-11 72.8 75 52.0
CANSAT64G2210 Cannabis sativa HOM05D000050 ORTHO05D000771 2.6e-11 72.8 102 41.2
HanXRQChr12g0373571 Helianthus annuus HOM05D000050 ORTHO05D000771 3.4e-11 72.4 76 48.7
Lalb_Chr03g0028621 Lupinus albus HOM05D000050 ORTHO05D000771 4.5e-11 72.0 89 44.9
vmacro09339 Vaccinium macrocarpon HOM05D000050 ORTHO05D000771 5.9e-11 71.6 112 42.0
CAN.G198.12 Capsicum annuum HOM05D000050 ORTHO05D000771 7.7e-11 71.2 72 52.8
Gohir.A05G188700 Gossypium hirsutum HOM05D000050 ORTHO05D000771 7.7e-11 71.2 71 52.1
Solyc07g051950.3 Solanum lycopersicum HOM05D000050 ORTHO05D000771 7.7e-11 71.2 58 56.9
HanXRQChr03g0076611 Helianthus annuus HOM05D000050 ORTHO05D000610 1.3e-10 70.5 105 40.0
Lj3g0015650 Lotus japonicus HOM05D000050 ORTHO05D000771 1.3e-10 70.5 80 45.0
Nitab4.5_0002807g0030 Nicotiana tabacum HOM05D000050 ORTHO05D000771 2.2e-10 69.7 52 61.5
Nitab4.5_0006634g0010 Nicotiana tabacum HOM05D000050 ORTHO05D000771 2.2e-10 69.7 52 61.5
Psat5g014040 Pisum sativum HOM05D000050 ORTHO05D000771 2.2e-10 69.7 94 46.8
Atru.chr6.3214 Acer truncatum HOM05D000050 ORTHO05D000771 2.9e-10 69.3 92 46.7
Aqoxy1G03108 Aquilegia oxysepala HOM05D000050 ORTHO05D000771 3.8e-10 68.9 110 43.6
QL05p000377 Quercus lobata HOM05D000050 ORTHO05D000771 3.8e-10 68.9 91 45.1
QL05p072541 Quercus lobata HOM05D000050 ORTHO05D000771 3.8e-10 68.9 91 45.1
vmacro09340 Vaccinium macrocarpon HOM05D000050 ORTHO05D000771 5.0e-10 68.6 103 40.8
ClCG02G002010 Citrullus lanatus HOM05D000050 ORTHO05D000771 8.5e-10 67.8 52 57.7
MBI10_g44534_MAGBIO Magnolia biondii HOM05D000050 ORTHO05D000771 8.5e-10 67.8 89 40.4
Thecc.06G224400 Theobroma cacao HOM05D000050 ORTHO05D000771 8.5e-10 67.8 112 38.4
arahy.Tifrunner.gnm1.ann1.KYEU97 Arachis hypogaea HOM05D000050 ORTHO05D000771 1.1e-09 67.4 80 46.2
Lalb_Chr23g0266331 Lupinus albus HOM05D000050 ORTHO05D000771 1.1e-09 67.4 112 35.7
MELO3C018824.2 Cucumis melo HOM05D000050 ORTHO05D000771 1.4e-09 67.0 72 47.2
Eucgr.K00789 Eucalyptus grandis HOM05D000050 ORTHO05D000771 1.4e-09 67.0 71 50.7
Gohir.D01G100500 Gossypium hirsutum HOM05D000050 ORTHO05D000771 1.4e-09 67.0 60 53.3
Gorai.002G125500 Gossypium raimondii HOM05D000050 ORTHO05D000771 1.4e-09 67.0 60 53.3
TWI63G0784 Tripterygium wilfordii HOM05D000050 ORTHO05D000771 1.4e-09 67.0 109 39.4
arahy.Tifrunner.gnm1.ann1.UTF5F5 Arachis hypogaea HOM05D000050 ORTHO05D000771 1.9e-09 66.6 80 46.2
Gohir.D05G191800 Gossypium hirsutum HOM05D000050 ORTHO05D000771 2.5e-09 66.2 71 49.3
Gorai.009G197100 Gossypium raimondii HOM05D000050 ORTHO05D000771 2.5e-09 66.2 71 49.3
Thecc.08G036700 Theobroma cacao HOM05D000050 ORTHO05D000771 2.5e-09 66.2 78 47.4
Oeu019050.1 Olea europaea HOM05D000050 ORTHO05D000771 3.2e-09 65.9 89 43.8
Gohir.A01G113300 Gossypium hirsutum HOM05D000050 ORTHO05D000771 4.2e-09 65.5 87 42.5
CsaV3_7G003500 Cucumis sativus L. HOM05D000050 ORTHO05D000771 5.5e-09 65.1 52 55.8
Duzib093G0444 Durio zibethinus HOM05D000050 ORTHO05D000771 5.5e-09 65.1 58 55.2
Cpa.g.sc87.98 Carica papaya HOM05D000050 ORTHO05D000771 7.2e-09 64.7 92 45.7
Rhsim04G0052500 Rhododendron simsii HOM05D000050 ORTHO05D000771 7.2e-09 64.7 74 50.0
PSO170G5855 Papaver somniferum HOM05D000050 ORTHO05D000771 1.2e-08 63.9 102 45.1
TWI38G1640 Tripterygium wilfordii HOM05D000050 ORTHO05D000771 1.2e-08 63.9 107 42.1
Gohir.D05G191900 Gossypium hirsutum HOM05D000050 ORTHO05D000771 1.6e-08 63.5 58 55.2
Gorai.009G197200 Gossypium raimondii HOM05D000050 ORTHO05D000771 1.6e-08 63.5 58 55.2
Os01g0247700 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D000771 1.6e-08 63.5 86 48.8
Lsat_1_v5_gn_7_16701 Lactuca sativa HOM05D000050 ORTHO05D000771 2.1e-08 63.2 123 33.3
Lj1g0026586 Lotus japonicus HOM05D000050 ORTHO05D000771 2.1e-08 63.2 99 40.4
Gohir.A05G188800 Gossypium hirsutum HOM05D000050 ORTHO05D000771 2.7e-08 62.8 96 41.7
Lj3g0017660 Lotus japonicus HOM05D000050 ORTHO05D000771 2.7e-08 62.8 85 38.8
Medtr4g049640 Medicago truncatula HOM05D000050 ORTHO05D000771 2.7e-08 62.8 95 40.0
TPR.G19732 Trifolium pratense HOM05D000050 ORTHO05D000771 2.7e-08 62.8 92 41.3
Gohir.D06G155800 Gossypium hirsutum HOM05D000050 ORTHO05D000771 3.6e-08 62.4 111 34.2
Manes.13G068044 Manihot esculenta HOM05D000050 ORTHO05D000771 3.6e-08 62.4 59 54.2
Lalb_Chr01g0005751 Lupinus albus HOM05D000050 ORTHO05D000771 4.6e-08 62.0 108 38.9
PSO063G7554 Papaver somniferum HOM05D000050 ORTHO05D000771 4.6e-08 62.0 100 42.0
Ciclev10003716m.g Citrus clementina HOM05D000050 ORTHO05D000771 6.1e-08 61.6 60 55.0
Duzib235G0139 Durio zibethinus HOM05D000050 ORTHO05D000771 6.1e-08 61.6 114 34.2
Gohir.A06G149700 Gossypium hirsutum HOM05D000050 ORTHO05D000771 6.1e-08 61.6 110 33.6
Lsat_1_v5_gn_7_15740 Lactuca sativa HOM05D000050 ORTHO05D000771 6.1e-08 61.6 95 38.9
TPR.G31199 Trifolium pratense HOM05D000050 ORTHO05D000771 6.1e-08 61.6 53 58.5
Sed0008159 Sechium edule HOM05D000050 ORTHO05D000771 7.9e-08 61.2 51 52.9
Glyma.06G307500 Glycine max HOM05D000050 ORTHO05D000771 1.0e-07 60.8 83 43.4
Lj4g0014257 Lotus japonicus HOM05D000050 ORTHO05D000771 1.0e-07 60.8 90 40.0
TPR.G37021 Trifolium pratense HOM05D000050 ORTHO05D000771 1.0e-07 60.8 93 39.8
Gorai.010G182100 Gossypium raimondii HOM05D000050 ORTHO05D000771 1.4e-07 60.5 111 33.3
TPR.G4640 Trifolium pratense HOM05D000050 ORTHO05D000771 1.4e-07 60.5 93 36.6
Glyma.12G097300 Glycine max HOM05D000050 ORTHO05D000771 1.8e-07 60.1 83 43.4
Nitab4.5_0009577g0040 Nicotiana tabacum HOM05D000050 ORTHO05D000771 1.8e-07 60.1 62 48.4
AL2G13650 Arabidopsis lyrata HOM05D000050 ORTHO05D000771 2.3e-07 59.7 99 41.4
COL.COLO4_26209 Corchorus olitorius HOM05D000050 ORTHO05D000771 2.3e-07 59.7 59 55.9
Nitab4.5_0000900g0050 Nicotiana tabacum HOM05D000050 ORTHO05D000771 2.3e-07 59.7 61 49.2
Sc17g0007480 Simmondsia chinensis HOM05D000050 ORTHO05D000771 2.3e-07 59.7 102 40.2
GSVIVG01012686001 Vitis vinifera HOM05D000083 ORTHO05D000196 3.9e-07 58.9 91 37.4
BcaB07g31309 Brassica carinata HOM05D000050 ORTHO05D000771 5.1e-07 58.5 102 41.2
Glyma.04G027300 Glycine max HOM05D000050 ORTHO05D000771 6.7e-07 58.2 109 36.7
BcaC06g31886 Brassica carinata HOM05D000050 ORTHO05D000771 8.8e-07 57.8 72 48.6
AT1G62280 Arabidopsis thaliana HOM05D000050 ORTHO05D000771 1.1e-06 57.4 109 37.6
Glyma.17G011600 Glycine max HOM05D000050 ORTHO05D000771 1.1e-06 57.4 112 35.7
HanXRQChr15g0470451 Helianthus annuus HOM05D000050 ORTHO05D000771 1.1e-06 57.4 87 39.1
Hma1.2p1_0298F.1_g117670 Hydrangea macrophylla HOM05D000050 ORTHO05D000771 1.1e-06 57.4 69 46.4
BcaC02g10495 Brassica carinata HOM05D000050 ORTHO05D000771 1.5e-06 57.0 72 47.2
A09p13090 Brassica napus HOM05D000050 ORTHO05D000771 1.5e-06 57.0 72 47.2
C04p28230 Brassica napus HOM05D000050 ORTHO05D000771 1.5e-06 57.0 72 47.2
BolC4t24368H Brassica oleracea HOM05D000050 ORTHO05D000771 1.5e-06 57.0 72 47.2
Hma1.2p1_0328F.1_g127080 Hydrangea macrophylla HOM05D000050 ORTHO05D000771 1.5e-06 57.0 84 39.3
VMungo1309G1041 Vigna mungo HOM05D000050 ORTHO05D000771 1.5e-06 57.0 116 37.9
BcaC04g22769 Brassica carinata HOM05D000050 ORTHO05D000771 2.0e-06 56.6 52 57.7
VMungo0592G0001 Vigna mungo HOM05D000050 ORTHO05D000771 2.0e-06 56.6 54 53.7
C09p15500 Brassica napus HOM05D000050 ORTHO05D000771 2.5e-06 56.2 72 47.2
BraA09t36953Z Brassica rapa HOM05D000050 ORTHO05D000771 2.5e-06 56.2 72 47.2
Peaxi162Scf00306g01313 Petunia axillaris HOM05D000050 ORTHO05D000771 2.5e-06 56.2 83 42.2
A09p16450 Brassica napus HOM05D000050 ORTHO05D000771 3.3e-06 55.8 72 48.6
BraA09t37282Z Brassica rapa HOM05D000050 ORTHO05D000771 3.3e-06 55.8 72 48.6
CARHR049840 Cardamine hirsuta HOM05D000050 ORTHO05D000771 3.3e-06 55.8 91 41.8
AUR62012735 Chenopodium quinoa HOM05D000050 ORTHO05D000771 3.3e-06 55.8 89 40.4
A03p67510 Brassica napus HOM05D000050 ORTHO05D000771 4.3e-06 55.5 72 48.6
C09p19970 Brassica napus HOM05D000050 ORTHO05D000771 4.3e-06 55.5 72 48.6
BolC9t54903H Brassica oleracea HOM05D000050 ORTHO05D000771 4.3e-06 55.5 72 48.6
Carub.0002s0272 Capsella rubella HOM05D000050 ORTHO05D000771 4.3e-06 55.5 74 45.9
AUR62017738 Chenopodium quinoa HOM05D002707 ORTHO05D002925 4.3e-06 55.5 93 37.6
Zm00001eb118730 Zea mays HOM05D000050 ORTHO05D000771 4.3e-06 55.5 96 41.7
Migut.M01340 Erythranthe guttata HOM05D000050 ORTHO05D000771 5.7e-06 55.1 114 38.6
Thhalv10023519m.g Eutrema salsugineum HOM05D000050 ORTHO05D000771 5.7e-06 55.1 103 39.8
Manes.05G153100 Manihot esculenta HOM05D000050 ORTHO05D000771 5.7e-06 55.1 58 46.6
Sp2g02360 Schrenkiella parvula HOM05D000050 ORTHO05D000771 5.7e-06 55.1 72 47.2
Aqoxy1G03340 Aquilegia oxysepala HOM05D000050 ORTHO05D000771 7.4e-06 54.7 87 41.4
Phvul.009G013800 Phaseolus vulgaris HOM05D000050 ORTHO05D000771 7.4e-06 54.7 72 47.2
Ah.01g012010 Amaranthus hybridus HOM05D000050 ORTHO05D000771 9.7e-06 54.3 56 50.0
EL10Ac1g00564 Beta vulgaris HOM05D000050 ORTHO05D000771 9.7e-06 54.3 35 71.4
EL10Ac8g20090 Beta vulgaris HOM05D000050 ORTHO05D000771 9.7e-06 54.3 97 40.2
BcaC04g22380 Brassica carinata HOM05D000050 ORTHO05D000771 9.7e-06 54.3 72 48.6
Glyma.07G262500 Glycine max HOM05D000050 ORTHO05D000771 9.7e-06 54.3 114 34.2
Psat7g203400 Pisum sativum HOM05D000050 ORTHO05D000771 9.7e-06 54.3 56 46.4
VMungo1309G0991 Vigna mungo HOM05D000050 ORTHO05D000771 9.7e-06 54.3 116 35.3


User provided reference genes

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