Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07157 Nelumbo nucifera HOM05D001193 ORTHO05D001016 4.3e-29 130.6 63 100.0
Nn2g10767 Nelumbo nucifera HOM05D001193 ORTHO05D001016 1.1e-27 125.9 63 93.7
Nn3g21170 Nelumbo nucifera HOM05D001193 ORTHO05D001016 4.6e-23 110.5 52 96.2
Nn4g23863 Nelumbo nucifera HOM05D001193 ORTHO05D001016 9.6e-21 102.8 52 88.5
Nn8g39284 Nelumbo nucifera HOM05D001193 ORTHO05D001016 4.8e-20 100.5 52 88.5
CiPaw.11G102200 Carya illinoinensis HOM05D001193 ORTHO05D001016 6.3e-20 100.1 52 86.5
CiPaw.12G071000 Carya illinoinensis HOM05D001193 ORTHO05D001016 1.8e-19 98.6 52 84.6
Haze_08084 Corylus avellana HOM05D001193 ORTHO05D001016 1.8e-19 98.6 52 82.7
Sabra01G0102400 Salix brachista HOM05D001193 ORTHO05D001016 1.8e-19 98.6 52 82.7
Thecc.03G315500 Theobroma cacao HOM05D001193 ORTHO05D001016 1.8e-19 98.6 52 82.7
Duzib068G0065 Durio zibethinus HOM05D001193 ORTHO05D001016 2.4e-19 98.2 52 82.7
Potri.001G132800 Populus trichocarpa HOM05D001193 ORTHO05D001016 3.1e-19 97.8 52 82.7
TAR375G0488 Trochodendron aralioides HOM05D001193 ORTHO05D001016 3.1e-19 97.8 52 82.7
Cfa012578 Carpinus fangiana HOM05D001193 ORTHO05D001016 4.1e-19 97.4 52 80.8
Haze_08081 Corylus avellana HOM05D001193 ORTHO05D001016 4.1e-19 97.4 52 80.8
Medtr5g027180 Medicago truncatula HOM05D001193 ORTHO05D001016 4.1e-19 97.4 52 80.8
THA.LOC104812763 Tarenaya hassleriana HOM05D001193 ORTHO05D001016 4.1e-19 97.4 52 82.7
Cpa.g.sc24.59 Carica papaya HOM05D001193 ORTHO05D001016 5.3e-19 97.1 50 84.0
Ca_25114_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 5.3e-19 97.1 52 80.8
Phvul.002G131900 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 5.3e-19 97.1 52 80.8
Prupe.5G022200 Prunus persica HOM05D001193 ORTHO05D001016 5.3e-19 97.1 52 78.8
GSVIVG01022610001 Vitis vinifera HOM05D001193 ORTHO05D001016 5.3e-19 97.1 52 82.7
arahy.Tifrunner.gnm1.ann1.0E5TT3 Arachis hypogaea HOM05D001193 ORTHO05D001016 6.9e-19 96.7 52 78.8
arahy.Tifrunner.gnm1.ann1.T5VF9E Arachis hypogaea HOM05D001193 ORTHO05D001016 6.9e-19 96.7 52 78.8
Cc08_g04370 Coffea canephora HOM05D001193 ORTHO05D001016 6.9e-19 96.7 50 82.0
Manes.17G008600 Manihot esculenta HOM05D001193 ORTHO05D001016 6.9e-19 96.7 50 84.0
VMungo1215G0728 Vigna mungo HOM05D001193 ORTHO05D001016 6.9e-19 96.7 52 80.8
vmacro14226 Vaccinium macrocarpon HOM05D001193 ORTHO05D001016 9.0e-19 96.3 52 82.7
Ciclev10002116m.g Citrus clementina HOM05D001193 ORTHO05D001016 1.2e-18 95.9 52 78.8
Lj7C161T7 Lonicera japonica HOM05D001193 ORTHO05D001016 1.2e-18 95.9 50 80.0
Lj2g0013531 Lotus japonicus HOM05D001193 ORTHO05D001016 1.2e-18 95.9 52 80.8
MD00G1000700 Malus domestica HOM05D001193 ORTHO05D001016 1.2e-18 95.9 52 78.8
MD06G1014200 Malus domestica HOM05D001193 ORTHO05D001016 1.2e-18 95.9 52 78.8
Oeu038586.1 Olea europaea HOM05D001193 ORTHO05D001016 1.2e-18 95.9 53 75.5
QL12p000927 Quercus lobata HOM05D001193 ORTHO05D001016 1.2e-18 95.9 52 76.9
RcHm_v2.0_Chr7g0213211 Rosa chinensis HOM05D001193 ORTHO05D001016 1.2e-18 95.9 52 76.9
Nitab4.5_0001033g0030 Nicotiana tabacum HOM05D001193 ORTHO05D001016 1.5e-18 95.5 52 78.8
CAN.G1269.8 Capsicum annuum HOM05D001193 ORTHO05D001016 2.6e-18 94.7 52 78.8
Potri.003G100700 Populus trichocarpa HOM05D001193 ORTHO05D001016 2.6e-18 94.7 52 78.8
Glyma.01G148300 Glycine max HOM05D001193 ORTHO05D001016 3.4e-18 94.4 52 76.9
Lsat_1_v5_gn_3_20520 Lactuca sativa HOM05D001193 ORTHO05D001016 3.4e-18 94.4 52 76.9
TWI60G1693 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 3.4e-18 94.4 52 76.9
QL12p000933 Quercus lobata HOM05D001193 ORTHO05D001016 4.5e-18 94.0 52 75.0
Solyc08g075970.3 Solanum lycopersicum HOM05D001193 ORTHO05D001016 4.5e-18 94.0 52 78.8
HanXRQChr06g0172841 Helianthus annuus HOM05D001193 ORTHO05D001016 5.9e-18 93.6 52 76.9
Peaxi162Scf00408g00069 Petunia axillaris HOM05D001193 ORTHO05D001016 5.9e-18 93.6 52 76.9
Sopen08g024620 Solanum pennellii HOM05D001193 ORTHO05D001016 5.9e-18 93.6 52 76.9
PGSC0003DMG400030882 Solanum tuberosum HOM05D001193 ORTHO05D001016 5.9e-18 93.6 52 76.9
TWI34G0473 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 7.6e-18 93.2 52 75.0
Atru.chr6.1502 Acer truncatum HOM05D001193 ORTHO05D001016 1.0e-17 92.8 52 76.9
Actinidia14752 Actinidia chinensis HOM05D001193 ORTHO05D001016 1.0e-17 92.8 52 76.9
Actinidia18151 Actinidia chinensis HOM05D001193 ORTHO05D001016 1.0e-17 92.8 52 76.9
Glyma.09G212200 Glycine max HOM05D001193 ORTHO05D001016 1.0e-17 92.8 52 78.8
CSS0001070 Camellia sinensis var. sinensis HOM05D001193 ORTHO05D001016 1.3e-17 92.4 50 82.0
CDE01G0295 Ceratophyllum demersum HOM05D001193 ORTHO05D001016 1.7e-17 92.0 50 76.0
Dinv22847 Davidia involucrata HOM05D001193 ORTHO05D001016 1.7e-17 92.0 52 75.0
Dinv29058 Davidia involucrata HOM05D001193 ORTHO05D001016 1.7e-17 92.0 52 75.0
ECA246G0418 Erigeron canadensis HOM05D001193 ORTHO05D001016 1.7e-17 92.0 52 75.0
FAN18G3519 Fragaria x ananassa HOM05D001193 ORTHO05D001016 1.7e-17 92.0 51 74.5
FAN18G4260 Fragaria x ananassa HOM05D001193 ORTHO05D001016 1.7e-17 92.0 51 74.5
Nitab4.5_0009295g0020 Nicotiana tabacum HOM05D001193 ORTHO05D001016 1.7e-17 92.0 52 76.9
Psat2g141400 Pisum sativum HOM05D001193 ORTHO05D001016 2.2e-17 91.7 52 71.2
PGR031G0267 Punica granatum HOM05D001193 ORTHO05D001016 2.2e-17 91.7 52 73.1
MELO3C013802.2 Cucumis melo HOM05D001193 ORTHO05D001016 2.9e-17 91.3 52 75.0
CsaV3_3G001120 Cucumis sativus L. HOM05D001193 ORTHO05D001016 2.9e-17 91.3 52 75.0
Gohir.D08G172000 Gossypium hirsutum HOM05D001193 ORTHO05D001016 2.9e-17 91.3 52 75.0
Gorai.004G179300 Gossypium raimondii HOM05D001193 ORTHO05D001016 2.9e-17 91.3 52 75.0
Oeu061085.1 Olea europaea HOM05D001193 ORTHO05D001016 3.8e-17 90.9 53 69.8
FvH4_5g23820 Fragaria vesca HOM05D001193 ORTHO05D001016 5.0e-17 90.5 51 72.5
AUR62007396 Chenopodium quinoa HOM05D001193 ORTHO05D001016 6.5e-17 90.1 50 74.0
AUR62027334 Chenopodium quinoa HOM05D001193 ORTHO05D001016 6.5e-17 90.1 50 74.0
COL.COLO4_16872 Corchorus olitorius HOM05D001193 ORTHO05D001016 6.5e-17 90.1 52 75.0
BcaC05g27238 Brassica carinata HOM05D001193 ORTHO05D001016 8.5e-17 89.7 53 69.8
C05p31530 Brassica napus HOM05D001371 ORTHO05D001319 8.5e-17 89.7 53 69.8
BolC5t31877H Brassica oleracea HOM05D001371 ORTHO05D001016 8.5e-17 89.7 53 69.8
DCAR_028244 Daucus carota HOM05D001193 ORTHO05D001016 8.5e-17 89.7 52 73.1
Eucgr.D02606 Eucalyptus grandis HOM05D001193 ORTHO05D001016 8.5e-17 89.7 50 74.0
Hma1.2p1_1179F.1_g264500 Hydrangea macrophylla HOM05D001193 ORTHO05D001016 8.5e-17 89.7 52 75.0
ClCG10G001100 Citrullus lanatus HOM05D001193 ORTHO05D001016 1.1e-16 89.4 52 73.1
Gohir.A08G150900 Gossypium hirsutum HOM05D001193 ORTHO05D001016 1.1e-16 89.4 52 73.1
SGA_v2.0_scaffold144G35873 Striga asiatica HOM05D001193 ORTHO05D001016 1.1e-16 89.4 52 69.2
HanXRQChr17g0537371 Helianthus annuus HOM05D001193 ORTHO05D001016 1.4e-16 89.0 52 73.1
Sc22g0001980 Simmondsia chinensis HOM05D001193 ORTHO05D001016 1.4e-16 89.0 50 76.0
SGA_v2.0_scaffold111G31372 Striga asiatica HOM05D001193 ORTHO05D001016 1.9e-16 88.6 52 75.0
VMungo0251G1403 Vigna mungo HOM05D001193 ORTHO05D001016 1.9e-16 88.6 52 71.2
AT1G32127 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 3.2e-16 87.8 52 71.2
Cc09_g09630 Coffea canephora HOM05D001193 ORTHO05D001016 3.2e-16 87.8 52 73.1
Ah.07g201210 Amaranthus hybridus HOM05D001193 ORTHO05D001016 4.2e-16 87.4 50 76.0
Aqoxy7G00856 Aquilegia oxysepala HOM05D001193 ORTHO05D001016 4.2e-16 87.4 52 73.1
EL10Ac5g11949 Beta vulgaris HOM05D001193 ORTHO05D001016 4.2e-16 87.4 50 74.0
Migut.E01340 Erythranthe guttata HOM05D001193 ORTHO05D001016 4.2e-16 87.4 50 74.0
FAN04G2489 Fragaria x ananassa HOM05D001193 ORTHO05D001016 4.2e-16 87.4 51 70.6
Oeu031899.1 Olea europaea HOM05D001193 ORTHO05D001016 4.2e-16 87.4 55 69.1
Ah.12g055900 Amaranthus hybridus HOM05D001193 ORTHO05D001016 5.5e-16 87.0 50 72.0
FAN13G2524 Fragaria x ananassa HOM05D001193 ORTHO05D001016 5.5e-16 87.0 51 70.6
DCAR_004249 Daucus carota HOM05D001193 ORTHO05D001016 7.2e-16 86.7 53 67.9
DCAR_015034 Daucus carota HOM05D001193 ORTHO05D001016 7.2e-16 86.7 53 67.9
SalBow4G2675 Salvia bowleyana HOM05D001193 ORTHO05D001016 7.2e-16 86.7 52 69.2
Aa31LG2G13870 Aethionema arabicum HOM05D001193 ORTHO05D001016 9.3e-16 86.3 49 75.5
AL1G46200 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 9.3e-16 86.3 52 69.2
FAN08G0973 Fragaria x ananassa HOM05D001193 ORTHO05D001016 9.3e-16 86.3 51 70.6
Psat4g110560 Pisum sativum HOM05D001193 ORTHO05D001016 9.3e-16 86.3 52 69.2
Sp1g27790 Schrenkiella parvula HOM05D001193 ORTHO05D001016 9.3e-16 86.3 52 69.2
BraA09t38953Z Brassica rapa HOM05D001371 ORTHO05D001319 1.2e-15 85.9 53 66.0
CARHR031470 Cardamine hirsuta HOM05D001193 ORTHO05D001016 1.2e-15 85.9 49 73.5
Thhalv10008495m.g Eutrema salsugineum HOM05D001193 ORTHO05D001016 1.2e-15 85.9 49 73.5
Glyma.16G104000 Glycine max HOM05D001193 ORTHO05D001016 1.6e-15 85.5 50 72.0
Phvul.003G272800 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 1.6e-15 85.5 52 69.2
Lalb_Chr16g0380831 Lupinus albus HOM05D001193 ORTHO05D001016 2.1e-15 85.1 52 67.3
BcaB07g32874 Brassica carinata HOM05D001193 ORTHO05D001016 2.7e-15 84.7 46 78.3
BcaC05g27240 Brassica carinata HOM05D001193 ORTHO05D001016 2.7e-15 84.7 46 78.3
Medtr8g071150 Medicago truncatula HOM05D001193 ORTHO05D001016 2.7e-15 84.7 52 67.3
MSTRG.1779 Avicennia marina HOM05D001193 ORTHO05D001016 3.6e-15 84.3 52 63.5
BcaB03g13763 Brassica carinata HOM05D001193 ORTHO05D001016 4.6e-15 84.0 52 67.3
BcaC05g27925 Brassica carinata HOM05D001193 ORTHO05D001016 4.6e-15 84.0 52 67.3
A09p34070 Brassica napus HOM05D001371 ORTHO05D001319 4.6e-15 84.0 53 64.2
C05p39310 Brassica napus HOM05D001193 ORTHO05D001016 4.6e-15 84.0 52 67.3
BolC5t32667H Brassica oleracea HOM05D001193 ORTHO05D001016 4.6e-15 84.0 52 67.3
Carub.0001s3044 Capsella rubella HOM05D001193 ORTHO05D001016 4.6e-15 84.0 49 71.4
Ca_22487_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 6.1e-15 83.6 52 69.2
TPR.G31321 Trifolium pratense HOM05D001193 ORTHO05D001016 6.1e-15 83.6 52 67.3
Lalb_Chr05g0215501 Lupinus albus HOM05D001193 ORTHO05D001016 1.3e-14 82.4 52 65.4
Lj4g0010733 Lotus japonicus HOM05D001193 ORTHO05D001016 2.3e-14 81.6 52 67.3
Hund14338 Selenicereus undatus HOM05D001193 ORTHO05D001016 3.0e-14 81.3 50 68.0
vmacro00071 Vaccinium macrocarpon HOM05D001193 ORTHO05D001016 6.7e-14 80.1 52 61.5
BraA05t21402Z Brassica rapa HOM05D001193 ORTHO05D001016 8.7e-14 79.7 53 62.3
Nn1g08906 Nelumbo nucifera HOM05D001193 ORTHO05D001016 8.7e-14 79.7 42 85.7
ECA246G1774 Erigeron canadensis HOM05D001193 ORTHO05D001016 1.1e-13 79.3 52 63.5
MSTRG.13977 Avicennia marina HOM05D001193 ORTHO05D001016 2.5e-13 78.2 52 63.5
PSO135G0199 Papaver somniferum HOM05D001193 ORTHO05D001016 2.5e-13 78.2 51 64.7
Rhsim11G0026800 Rhododendron simsii HOM05D001193 ORTHO05D001016 3.3e-13 77.8 52 61.5
ATR0829G135 Amborella trichopoda HOM05D001193 ORTHO05D001016 9.7e-13 76.3 48 62.5
PSO384G4910 Papaver somniferum HOM05D001193 ORTHO05D001016 9.7e-13 76.3 51 62.7
Sed0001720 Sechium edule HOM05D001193 ORTHO05D001016 1.3e-12 75.9 49 69.4
Medtr8g071140 Medicago truncatula HOM05D001193 ORTHO05D001016 1.6e-12 75.5 52 59.6
A05p25260 Brassica napus HOM05D001193 ORTHO05D001016 2.2e-12 75.1 53 62.3
SEGI_08849 Sequoiadendron giganteum HOM05D001193 ORTHO05D001016 6.3e-12 73.6 50 60.0
Mapoly0090s0038 Marchantia polymorpha HOM05D001193 ORTHO05D001016 2.4e-11 71.6 48 58.3
Pp3c5_8910 Physcomitrium patens HOM05D001193 ORTHO05D001016 6.9e-11 70.1 52 53.8
unitig_0.g2216 Utricularia gibba HOM05D001193 ORTHO05D001016 6.9e-11 70.1 52 53.8
PSO017G4028 Papaver somniferum HOM05D001193 ORTHO05D001016 9.1e-11 69.7 59 47.5
HPP92_001481 Vanilla planifolia HOM05D001193 ORTHO05D001016 2.0e-10 68.6 53 56.6
CSS0042143 Camellia sinensis var. sinensis HOM05D001193 ORTHO05D001016 1.3e-09 65.9 42 66.7
SMO165G0033 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 1.3e-09 65.9 51 47.1
Os11g0621000 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 2.9e-09 64.7 57 52.6
AagrBONN_evm.TU.Sc2ySwM_117.4111 Anthoceros agrestis HOM05D001193 ORTHO05D001016 1.1e-08 62.8 52 53.8
Zm00001eb166570 Zea mays HOM05D001193 ORTHO05D001016 1.4e-08 62.4 51 56.9
Zm00001eb167000 Zea mays HOM05D001193 ORTHO05D001016 9.4e-08 59.7 52 55.8
BcaB07g32877 Brassica carinata HOM05D001193 ORTHO05D001016 1.2e-07 59.3 53 52.8


User provided reference genes

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