Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 5.9e-101 370.9 195 100.0
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 9.3e-30 134.4 188 47.3
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 3.0e-20 102.8 191 39.8
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 3.3e-19 99.4 184 42.4
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 3.3e-19 99.4 190 38.9
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 7.4e-19 98.2 204 38.7
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 9.6e-19 97.8 167 43.7
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.6e-18 97.1 183 39.9
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 3.7e-18 95.9 179 39.1
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 8.1e-18 94.7 181 42.0
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 8.1e-18 94.7 164 45.1
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.4e-17 94.0 164 44.5
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.4e-17 94.0 191 35.1
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.8e-17 93.6 194 35.1
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 4.0e-17 92.4 205 37.1
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 5.3e-17 92.0 182 37.9
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 5.3e-17 92.0 182 37.9
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 9.0e-17 91.3 182 37.9
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 9.0e-17 91.3 178 36.5
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.5e-16 90.5 53 84.9
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-16 89.7 178 35.4
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.6e-16 89.7 182 37.9
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 3.4e-16 89.4 175 40.6
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 3.4e-16 89.4 194 34.5
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 4.5e-16 89.0 176 38.6
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 4.5e-16 89.0 175 38.9
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 4.5e-16 89.0 181 37.6
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 4.5e-16 89.0 59 72.9
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 7.6e-16 88.2 183 41.0
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 7.6e-16 88.2 183 41.0
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 9.9e-16 87.8 164 43.3
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.3e-15 87.4 183 39.9
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 1.3e-15 87.4 167 44.3
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.7e-15 87.0 175 38.9
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 1.7e-15 87.0 174 35.6
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 2.2e-15 86.7 182 36.3
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 2.2e-15 86.7 168 38.7
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 3.8e-15 85.9 58 77.6
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 3.8e-15 85.9 176 36.9
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.8e-15 85.9 178 37.1
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.9e-15 85.5 58 77.6
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 6.4e-15 85.1 178 38.2
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 6.4e-15 85.1 179 36.9
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 8.4e-15 84.7 178 35.4
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 8.4e-15 84.7 60 68.3
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 8.4e-15 84.7 56 75.0
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.1e-14 84.3 173 36.4
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.1e-14 84.3 58 74.1
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.4e-14 84.0 179 40.2
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 1.4e-14 84.0 178 37.1
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.4e-14 84.0 173 35.8
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 1.9e-14 83.6 58 74.1
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 2.4e-14 83.2 183 37.2
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 2.4e-14 83.2 175 38.9
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 2.4e-14 83.2 87 59.8
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.2e-14 82.8 103 49.5
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 3.2e-14 82.8 62 67.7
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 3.2e-14 82.8 172 38.4
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 4.2e-14 82.4 175 37.1
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 5.5e-14 82.0 175 39.4
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 5.5e-14 82.0 179 36.9
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 7.1e-14 81.6 218 34.4
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 9.3e-14 81.3 171 38.0
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 1.2e-13 80.9 59 76.3
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 1.2e-13 80.9 180 35.6
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.2e-13 80.9 196 32.7
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.6e-13 80.5 211 37.4
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.1e-13 80.1 191 37.2
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 2.1e-13 80.1 182 33.5
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 2.1e-13 80.1 171 40.4
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.7e-13 79.7 58 69.0
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 2.7e-13 79.7 57 73.7
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 2.7e-13 79.7 171 40.4
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 3.5e-13 79.3 179 40.8
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 4.6e-13 79.0 182 39.0
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 4.6e-13 79.0 174 35.1
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 4.6e-13 79.0 193 35.2
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 4.6e-13 79.0 107 45.8
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 6.0e-13 78.6 173 32.4
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 7.9e-13 78.2 198 37.4
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 7.9e-13 78.2 183 37.7
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.0e-12 77.8 192 34.4
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 1.0e-12 77.8 169 37.9
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 1.0e-12 77.8 169 37.9
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.0e-12 77.8 177 39.0
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.3e-12 77.4 191 34.6
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.3e-12 77.4 185 35.1
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 2.3e-12 76.6 100 52.0
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-12 76.6 100 52.0
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 2.3e-12 76.6 71 57.7
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 3.0e-12 76.3 202 37.6
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 3.9e-12 75.9 183 35.5
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.9e-12 75.9 169 34.9
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 3.9e-12 75.9 125 39.2
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 5.1e-12 75.5 57 63.2
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 6.7e-12 75.1 104 53.8
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 8.7e-12 74.7 53 69.8
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 8.7e-12 74.7 190 35.8
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 8.7e-12 74.7 186 36.6
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-11 74.3 53 69.8
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.1e-11 74.3 53 69.8
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.1e-11 74.3 177 36.7
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.5e-11 73.9 186 34.4
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.5e-11 73.9 182 33.5
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.5e-11 73.9 60 60.0
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.9e-11 73.6 169 34.9
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 2.5e-11 73.2 176 39.2
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 3.3e-11 72.8 173 37.6
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.3e-11 72.8 183 37.2
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 4.3e-11 72.4 53 67.9
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 4.3e-11 72.4 57 64.9
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 4.3e-11 72.4 65 55.4
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 5.6e-11 72.0 171 35.7
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 7.4e-11 71.6 57 64.9
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 7.4e-11 71.6 50 66.0
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 9.6e-11 71.2 172 32.6
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-10 70.9 76 53.9
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-10 70.9 53 66.0
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-10 70.9 57 63.2
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 1.6e-10 70.5 57 64.9
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 1.6e-10 70.5 169 39.1
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 2.1e-10 70.1 48 70.8
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 2.1e-10 70.1 81 50.6
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 2.8e-10 69.7 179 33.5
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 2.8e-10 69.7 60 60.0
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 4.8e-10 68.9 81 50.6
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 4.8e-10 68.9 53 66.0
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 4.8e-10 68.9 81 50.6
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 6.2e-10 68.6 166 33.7
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 8.2e-10 68.2 58 67.2
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 8.2e-10 68.2 165 33.3
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.1e-09 67.8 173 37.0
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.4e-09 67.4 166 33.7
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.1e-09 66.2 95 46.3
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.2e-08 64.3 79 48.1
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.5e-08 63.9 167 33.5
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.5e-08 63.9 59 50.8
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.0e-08 63.5 178 36.5
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.0e-08 63.5 79 46.8
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 2.0e-08 63.5 61 54.1
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 4.5e-08 62.4 176 33.0
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 4.5e-08 62.4 56 62.5
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 5.8e-08 62.0 171 35.7
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 7.6e-08 61.6 170 35.3
Zm00001eb217990 Zea mays HOM05D023203 ORTHO05D025996 7.6e-08 61.6 54 61.1
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 1.3e-07 60.8 87 43.7
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 1.7e-07 60.5 168 31.0
Os03g0661500 Oryza sativa ssp. japonica HOM05D023203 ORTHO05D025996 1.7e-07 60.5 53 58.5
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 1.7e-07 60.5 91 46.2
Os12g0628300 Oryza sativa ssp. japonica HOM05D023203 ORTHO05D025996 2.2e-07 60.1 50 58.0
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 2.2e-07 60.1 169 30.2
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.8e-07 59.3 157 36.3
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 4.9e-07 58.9 169 32.0
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 6.5e-07 58.5 62 56.5
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 2.5e-06 56.6 83 43.4


User provided reference genes

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