Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 7.5e-62 240.4 122 100.0
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.4e-29 131.0 120 60.8
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 3.2e-28 128.6 108 63.9
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 2.1e-27 125.9 120 57.5
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 3.5e-27 125.2 108 63.0
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.3e-26 123.2 124 55.6
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 2.3e-26 122.5 123 56.1
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.0e-26 122.1 111 65.8
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 6.6e-26 120.9 121 54.5
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.5e-25 119.8 121 56.2
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 4.3e-25 118.2 123 55.3
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.3e-25 117.5 121 52.1
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 9.6e-25 117.1 122 54.1
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.3e-24 116.7 121 49.6
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.6e-24 115.2 121 51.2
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.8e-23 112.8 124 54.0
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.4e-23 112.5 121 52.9
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 5.3e-23 111.3 108 55.6
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 5.3e-23 111.3 108 55.6
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 6.9e-23 110.9 122 50.8
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 9.0e-23 110.5 112 58.0
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.2e-22 110.2 122 54.1
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.5e-22 109.8 122 52.5
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 2.0e-22 109.4 125 52.8
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.6e-22 109.0 114 55.3
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 2.6e-22 109.0 121 51.2
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.6e-22 109.0 122 50.8
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.3e-21 106.7 125 51.2
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.3e-21 106.7 121 47.1
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.8e-21 105.1 121 47.1
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 8.4e-21 104.0 125 50.4
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 8.4e-21 104.0 122 46.7
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.1e-20 103.6 117 49.6
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 1.9e-20 102.8 122 45.1
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 3.2e-20 102.1 122 45.1
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.2e-20 101.7 122 45.9
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.4e-20 101.3 108 54.6
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.1e-20 100.9 111 53.2
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 9.3e-20 100.5 117 49.6
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.2e-19 100.1 123 47.2
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.6e-19 99.8 124 49.2
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.6e-19 99.8 122 46.7
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 6.0e-19 97.8 121 42.1
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 7.9e-19 97.4 121 43.8
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.3e-18 96.7 124 48.4
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 1.3e-18 96.7 119 47.1
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.3e-18 96.7 108 54.6
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.7e-18 96.3 119 44.5
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.3e-18 95.9 108 50.0
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.3e-18 95.9 108 50.0
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 2.3e-18 95.9 109 47.7
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 3.0e-18 95.5 108 50.0
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.0e-18 95.5 106 49.1
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.9e-18 95.1 107 50.5
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.1e-18 94.7 116 44.0
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 6.6e-18 94.4 123 43.9
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 6.6e-18 94.4 110 50.9
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 6.6e-18 94.4 106 50.9
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 8.7e-18 94.0 108 49.1
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 8.7e-18 94.0 128 47.7
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 8.7e-18 94.0 106 48.1
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.1e-17 93.6 115 46.1
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-17 93.6 113 47.8
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.5e-17 93.2 128 47.7
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.3e-17 92.0 123 43.1
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 3.3e-17 92.0 109 51.4
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 4.3e-17 91.7 117 45.3
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 4.3e-17 91.7 107 50.5
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 5.6e-17 91.3 119 47.1
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 5.6e-17 91.3 106 47.2
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 7.3e-17 90.9 119 42.9
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 2.8e-16 89.0 113 46.0
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.6e-16 88.6 108 47.2
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 4.8e-16 88.2 120 42.5
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 6.2e-16 87.8 120 40.8
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 8.1e-16 87.4 122 41.0
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 8.1e-16 87.4 109 52.3
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.4e-15 86.7 109 49.5
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.8e-15 86.3 108 46.3
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.8e-15 86.3 103 45.6
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 1.8e-15 86.3 121 40.5
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.8e-15 86.3 109 46.8
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.8e-15 86.3 113 41.6
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.0e-15 85.1 112 44.6
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.0e-15 85.1 112 44.6
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 5.3e-15 84.7 103 49.5
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 6.9e-15 84.3 121 40.5
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 6.9e-15 84.3 109 45.9
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-14 83.6 113 46.0
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.2e-14 83.6 114 43.0
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.5e-14 83.2 124 42.7
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 1.5e-14 83.2 109 43.1
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.0e-14 82.8 108 44.4
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 2.0e-14 82.8 120 47.5
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 2.6e-14 82.4 113 46.0
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.4e-14 82.0 112 43.8
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 3.4e-14 82.0 106 47.2
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 3.4e-14 82.0 141 37.6
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 4.5e-14 81.6 106 46.2
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 1.7e-13 79.7 122 41.0
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 1.7e-13 79.7 108 42.6
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 2.9e-13 79.0 108 40.7
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.8e-13 78.6 104 39.4
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 3.8e-13 78.6 117 38.5
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.8e-13 78.6 112 41.1
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 4.9e-13 78.2 114 42.1
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 6.4e-13 77.8 114 42.1
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 8.4e-13 77.4 107 43.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.4e-12 76.6 127 38.6
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 2.4e-12 75.9 105 43.8
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 3.2e-12 75.5 109 43.1
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 7.1e-12 74.3 107 42.1
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.6e-11 73.2 108 42.6
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.7e-11 72.4 107 41.1
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 3.5e-11 72.0 125 40.0
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 4.6e-11 71.6 99 45.5
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.0e-11 71.2 108 41.7
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.0e-10 70.5 130 37.7
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.3e-10 70.1 113 39.8
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.0e-10 68.9 92 48.9
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 8.7e-10 67.4 114 41.2
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 1.5e-09 66.6 110 40.9
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 5.6e-09 64.7 109 37.6
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.4e-09 64.3 108 43.5
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.4e-09 64.3 108 43.5
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 1.6e-08 63.2 112 40.2
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 2.1e-08 62.8 110 39.1
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 6.2e-08 61.2 108 38.9
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 6.2e-08 61.2 111 38.7
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 8.1e-08 60.8 118 36.4
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 1.1e-07 60.5 106 38.7
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.4e-07 60.1 106 40.6
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.8e-07 59.7 112 39.3
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 1.8e-07 59.7 108 35.2
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 4.0e-07 58.5 81 46.9
Zm00001eb219890 Zea mays HOM05D004992 ORTHO05D006004 4.0e-07 58.5 97 39.2
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 9.0e-07 57.4 115 34.8
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 1.2e-06 57.0 110 34.5
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.5e-06 56.6 111 32.4
Nitab4.5_0005048g0020 Nicotiana tabacum HOM05D067607 ORTHO05D049378 1.5e-06 56.6 52 63.5
Lsat_1_v5_gn_5_5200 Lactuca sativa HOM05D007823 ORTHO05D000174 2.0e-06 56.2 86 39.5
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 2.0e-06 56.2 118 33.1
Medtr5g092085 Medicago truncatula HOM05D004992 ORTHO05D006004 2.6e-06 55.8 89 38.2
SalBow7G1414 Salvia bowleyana HOM05D004992 ORTHO05D006004 2.6e-06 55.8 89 34.8
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 2.6e-06 55.8 99 34.3
Os03g0567100 Oryza sativa ssp. japonica HOM05D004992 ORTHO05D006004 3.4e-06 55.5 113 36.3
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 5.8e-06 54.7 111 33.3
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 5.8e-06 54.7 111 33.3
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 5.8e-06 54.7 111 33.3


User provided reference genes

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