Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06940 Nelumbo nucifera HOM05D006759 ORTHO05D008633 3.7e-31 137.5 66 100.0
Actinidia36908 Actinidia chinensis HOM05D006759 ORTHO05D008633 2.3e-09 65.1 48 70.8
CSS0000245 Camellia sinensis var. sinensis HOM05D006759 ORTHO05D008633 2.3e-09 65.1 48 70.8
CSS0002106 Camellia sinensis var. sinensis HOM05D006759 ORTHO05D008633 2.3e-09 65.1 48 70.8
vmacro15843 Vaccinium macrocarpon HOM05D006759 ORTHO05D008633 3.1e-09 64.7 48 70.8
Dinv17853 Davidia involucrata HOM05D006759 ORTHO05D008633 5.2e-09 63.9 48 68.8
Nn1g03732 Nelumbo nucifera HOM05D006759 ORTHO05D008633 8.9e-09 63.2 48 66.7
Cc02_g11810 Coffea canephora HOM05D006759 ORTHO05D008633 1.2e-08 62.8 48 66.7
Cpa.g.sc81.5 Carica papaya HOM05D006759 ORTHO05D008633 1.5e-08 62.4 48 64.6
COL.COLO4_31683 Corchorus olitorius HOM05D006759 ORTHO05D008633 2.0e-08 62.0 48 64.6
Gohir.A10G017000 Gossypium hirsutum HOM05D006759 ORTHO05D008633 2.0e-08 62.0 48 64.6
Gohir.D10G017100 Gossypium hirsutum HOM05D006759 ORTHO05D008633 2.0e-08 62.0 48 64.6
Gorai.011G019000 Gossypium raimondii HOM05D006759 ORTHO05D008633 2.0e-08 62.0 48 64.6
Nitab4.5_0006475g0040 Nicotiana tabacum HOM05D006759 ORTHO05D008633 2.0e-08 62.0 48 64.6
SalBow8G2756 Salvia bowleyana HOM05D006759 ORTHO05D008633 2.0e-08 62.0 48 62.5
Lalb_Chr05g0218011 Lupinus albus HOM05D006759 ORTHO05D008633 2.6e-08 61.6 48 66.7
Rhsim02G0115500 Rhododendron simsii HOM05D006759 ORTHO05D008633 2.6e-08 61.6 48 66.7
MSTRG.15955 Avicennia marina HOM05D006759 ORTHO05D008633 3.4e-08 61.2 48 64.6
Cfa016405 Carpinus fangiana HOM05D006759 ORTHO05D008633 3.4e-08 61.2 48 64.6
Potri.011G031600 Populus trichocarpa HOM05D006759 ORTHO05D008633 3.4e-08 61.2 48 62.5
Sc05g0008410 Simmondsia chinensis HOM05D006759 ORTHO05D008633 3.4e-08 61.2 48 64.6
arahy.Tifrunner.gnm1.ann1.13LU1X Arachis hypogaea HOM05D006759 ORTHO05D008633 4.4e-08 60.8 48 64.6
arahy.Tifrunner.gnm1.ann1.6345FV Arachis hypogaea HOM05D006759 ORTHO05D008633 4.4e-08 60.8 48 64.6
Haze_06682 Corylus avellana HOM05D006759 ORTHO05D008633 4.4e-08 60.8 48 64.6
Peaxi162Scf00082g01114 Petunia axillaris HOM05D006759 ORTHO05D008633 4.4e-08 60.8 48 62.5
Thecc.06G208000 Theobroma cacao HOM05D006759 ORTHO05D008633 4.4e-08 60.8 48 62.5
TAR626G1069 Trochodendron aralioides HOM05D006759 ORTHO05D008633 4.4e-08 60.8 48 64.6
Migut.M01261 Erythranthe guttata HOM05D006759 ORTHO05D008633 5.8e-08 60.5 48 62.5
Nitab4.5_0002345g0080 Nicotiana tabacum HOM05D006759 ORTHO05D008633 5.8e-08 60.5 48 62.5
CANSAT56G4156 Cannabis sativa HOM05D006759 ORTHO05D008633 7.5e-08 60.1 48 60.4
CDE05G1382 Ceratophyllum demersum HOM05D006759 ORTHO05D008633 7.5e-08 60.1 52 61.5
Eucgr.D00856 Eucalyptus grandis HOM05D006759 ORTHO05D008633 7.5e-08 60.1 48 62.5
MBI02_g02472_MAGBIO Magnolia biondii HOM05D006759 ORTHO05D008633 7.5e-08 60.1 48 62.5
Potri.004G031100 Populus trichocarpa HOM05D006759 ORTHO05D008633 9.8e-08 59.7 48 62.5
PGR004G2806 Punica granatum HOM05D006759 ORTHO05D008633 9.8e-08 59.7 48 64.6
Prupe.4G029700 Prunus persica HOM05D006759 ORTHO05D008633 1.3e-07 59.3 48 60.4
QL05p077196 Quercus lobata HOM05D006759 ORTHO05D008633 1.3e-07 59.3 48 62.5
QL93p0073_1304 Quercus lobata HOM05D006759 ORTHO05D008633 1.3e-07 59.3 48 62.5
Atru.chr10.2043 Acer truncatum HOM05D006759 ORTHO05D008633 1.7e-07 58.9 48 62.5
Aa31LG6G3340 Aethionema arabicum HOM05D006759 ORTHO05D008633 1.7e-07 58.9 48 64.6
Lj4g0006967 Lotus japonicus HOM05D006759 ORTHO05D008633 1.7e-07 58.9 48 62.5
Oeu058167.4 Olea europaea HOM05D006759 ORTHO05D008633 1.7e-07 58.9 48 62.5
DCAR_028150 Daucus carota HOM05D006759 ORTHO05D008633 2.2e-07 58.5 48 62.5
THA.LOC104812582 Tarenaya hassleriana HOM05D006759 ORTHO05D008633 2.2e-07 58.5 48 62.5
Ciclev10016144m.g Citrus clementina HOM05D006759 ORTHO05D008633 2.9e-07 58.2 48 62.5
Psat7g105480 Pisum sativum HOM05D006759 ORTHO05D008633 2.9e-07 58.2 48 62.5
Sabra11G0019100 Salix brachista HOM05D006759 ORTHO05D008633 2.9e-07 58.2 48 58.3
Sabra11G0024900 Salix brachista HOM05D006759 ORTHO05D008633 2.9e-07 58.2 48 58.3
Sp7g19390 Schrenkiella parvula HOM05D006759 ORTHO05D008633 2.9e-07 58.2 48 62.5
Ah.14g088500 Amaranthus hybridus HOM05D006759 ORTHO05D008633 3.7e-07 57.8 48 58.3
Glyma.08G062300 Glycine max HOM05D006759 ORTHO05D008633 3.7e-07 57.8 48 58.3
Manes.16G016600 Manihot esculenta HOM05D006759 ORTHO05D008633 3.7e-07 57.8 48 62.5
TWI38G2336 Tripterygium wilfordii HOM05D006759 ORTHO05D008633 3.7e-07 57.8 48 62.5
BcaNung00862 Brassica carinata HOM05D006759 ORTHO05D008633 4.9e-07 57.4 48 60.4
C07p51160 Brassica napus HOM05D006759 ORTHO05D008633 4.9e-07 57.4 48 60.4
BolC7t45615H Brassica oleracea HOM05D006759 ORTHO05D008633 4.9e-07 57.4 48 60.4
Ca_18449_v3 Cicer arietinum L. HOM05D006759 ORTHO05D008633 4.9e-07 57.4 48 60.4
BcaC06g30660 Brassica carinata HOM05D006759 ORTHO05D008633 6.4e-07 57.0 48 60.4
A03p52720 Brassica napus HOM05D006759 ORTHO05D008633 6.4e-07 57.0 48 60.4
BraA03t14346Z Brassica rapa HOM05D006759 ORTHO05D008633 6.4e-07 57.0 48 60.4
CANSAT21G1109 Cannabis sativa HOM05D006759 ORTHO05D008633 6.4e-07 57.0 48 58.3
CiPaw.09G080000 Carya illinoinensis HOM05D006759 ORTHO05D008633 6.4e-07 57.0 48 56.2
Thhalv10025914m.g Eutrema salsugineum HOM05D006759 ORTHO05D008633 6.4e-07 57.0 48 60.4
MD10G1311200 Malus domestica HOM05D006759 ORTHO05D008633 6.4e-07 57.0 48 60.4
Hund21315 Selenicereus undatus HOM05D006759 ORTHO05D008633 6.4e-07 57.0 48 60.4
AL7G32800 Arabidopsis lyrata HOM05D006759 ORTHO05D008633 8.3e-07 56.6 48 60.4
AT4G21320 Arabidopsis thaliana HOM05D006759 ORTHO05D008633 8.3e-07 56.6 48 60.4
Carub.0007s2012 Capsella rubella HOM05D006759 ORTHO05D008633 8.3e-07 56.6 48 60.4
CARHR227890 Cardamine hirsuta HOM05D006759 ORTHO05D008633 8.3e-07 56.6 48 60.4
RcHm_v2.0_Chr5g0004601 Rosa chinensis HOM05D006759 ORTHO05D008633 8.3e-07 56.6 48 58.3
SGA_v2.0_scaffold7G03895 Striga asiatica HOM05D006759 ORTHO05D008633 8.3e-07 56.6 47 59.6
EL10As6g23697 Beta vulgaris HOM05D006759 ORTHO05D008633 1.1e-06 56.2 47 57.4
Medtr4g092110 Medicago truncatula HOM05D006759 ORTHO05D008633 1.1e-06 56.2 48 60.4
HanXRQChr05g0130811 Helianthus annuus HOM05D006759 ORTHO05D008633 1.4e-06 55.8 48 56.2
Duzib160G0398 Durio zibethinus HOM05D006759 ORTHO05D008633 1.9e-06 55.5 48 58.3
FAN21G1217 Fragaria x ananassa HOM05D006759 ORTHO05D008633 1.9e-06 55.5 48 56.2
FAN21G3610 Fragaria x ananassa HOM05D006759 ORTHO05D008633 1.9e-06 55.5 48 56.2
Sopen02g024680 Solanum pennellii HOM05D006759 ORTHO05D008633 1.9e-06 55.5 48 58.3
PGSC0003DMG400021726 Solanum tuberosum HOM05D006759 ORTHO05D008633 2.4e-06 55.1 48 56.2
CsaV3_1G011360 Cucumis sativus L. HOM05D006759 ORTHO05D008633 3.2e-06 54.7 48 54.2
MELO3C002513.2 Cucumis melo HOM05D006759 ORTHO05D008633 4.1e-06 54.3 48 54.2
Lsat_1_v5_gn_7_18360 Lactuca sativa HOM05D006759 ORTHO05D008633 4.1e-06 54.3 48 54.2
ClCG03G005150 Citrullus lanatus HOM05D006759 ORTHO05D008633 5.4e-06 53.9 48 52.1
FvH4_3g02960 Fragaria vesca HOM05D006759 ORTHO05D008633 5.4e-06 53.9 48 56.2
CAN.G424.100 Capsicum annuum HOM05D006759 ORTHO05D008633 9.2e-06 53.1 48 54.2
ECA236G1815 Erigeron canadensis HOM05D006759 ORTHO05D008633 9.2e-06 53.1 48 52.1
Phvul.002G218300 Phaseolus vulgaris HOM05D006759 ORTHO05D008633 9.2e-06 53.1 48 56.2
Solyc02g079930.3 Solanum lycopersicum HOM05D006759 ORTHO05D008633 9.2e-06 53.1 48 56.2


User provided reference genes

Program Settings