Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.3e-48 196.1 98 100.0
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.7e-30 134.4 76 89.5
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 3.3e-28 128.3 77 83.1
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.4e-28 127.9 76 84.2
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.7e-28 126.7 76 84.2
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.7e-27 124.8 76 82.9
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.1e-26 123.2 76 81.6
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.8e-26 122.5 76 81.6
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.4e-26 122.1 76 80.3
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 3.1e-26 121.7 76 80.3
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.1e-26 121.3 76 81.6
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 4.1e-26 121.3 78 75.6
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 4.1e-26 121.3 78 75.6
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 4.1e-26 121.3 76 77.6
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 4.1e-26 121.3 76 81.6
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 4.1e-26 121.3 76 80.3
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 4.1e-26 121.3 76 77.6
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 4.1e-26 121.3 76 78.9
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 5.3e-26 120.9 76 78.9
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 5.3e-26 120.9 76 77.6
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.2e-25 119.8 76 77.6
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.2e-25 119.8 76 80.3
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.2e-25 119.8 76 80.3
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.5e-25 119.4 76 77.6
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.5e-25 119.4 76 77.6
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.0e-25 119.0 76 76.3
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.0e-25 119.0 80 75.0
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 2.6e-25 118.6 76 76.3
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.6e-25 118.6 76 76.3
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.6e-25 118.6 76 76.3
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.6e-25 118.6 76 76.3
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.5e-25 118.2 76 78.9
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.5e-25 118.2 76 78.9
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.5e-25 118.2 76 78.9
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 3.5e-25 118.2 78 75.6
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.5e-25 118.2 78 73.1
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 4.5e-25 117.9 76 78.9
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 4.5e-25 117.9 76 77.6
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 4.5e-25 117.9 76 78.9
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.5e-25 117.9 76 76.3
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 5.9e-25 117.5 76 77.6
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 5.9e-25 117.5 76 76.3
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 5.9e-25 117.5 76 75.0
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 7.7e-25 117.1 76 76.3
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 7.7e-25 117.1 78 76.9
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.0e-24 116.7 76 80.3
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.3e-24 116.3 76 76.3
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.3e-24 116.3 76 73.7
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.3e-24 116.3 78 73.1
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.3e-24 116.3 76 76.3
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.7e-24 115.9 76 76.3
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.7e-24 115.9 78 74.4
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.7e-24 115.9 76 76.3
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.7e-24 115.9 76 76.3
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.7e-24 115.9 76 75.0
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.7e-24 115.9 76 72.4
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.2e-24 115.5 76 76.3
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.9e-24 115.2 76 75.0
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.9e-24 115.2 76 75.0
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.8e-24 114.8 76 77.6
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 3.8e-24 114.8 76 72.4
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 3.8e-24 114.8 76 76.3
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.8e-24 114.8 76 75.0
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 3.8e-24 114.8 80 73.8
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.0e-24 114.4 76 75.0
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 6.5e-24 114.0 83 69.9
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 6.5e-24 114.0 76 72.4
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 8.5e-24 113.6 76 73.7
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 8.5e-24 113.6 76 73.7
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 8.5e-24 113.6 76 75.0
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.1e-23 113.2 76 73.7
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.1e-23 113.2 76 72.4
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.5e-23 112.8 76 73.7
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.5e-23 112.8 76 73.7
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.5e-23 112.8 89 66.3
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.5e-23 112.8 76 73.7
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.9e-23 112.5 76 72.4
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.9e-23 112.5 76 72.4
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.9e-23 112.5 76 69.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.9e-23 112.5 76 72.4
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.9e-23 112.5 76 72.4
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 2.5e-23 112.1 76 71.1
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 2.5e-23 112.1 76 72.4
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 3.2e-23 111.7 78 71.8
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 4.2e-23 111.3 76 73.7
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 4.2e-23 111.3 76 71.1
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 4.2e-23 111.3 76 71.1
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 5.5e-23 110.9 76 73.7
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 5.5e-23 110.9 76 72.4
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.5e-23 110.9 76 71.1
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 7.2e-23 110.5 76 75.0
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 7.2e-23 110.5 76 68.4
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 9.4e-23 110.2 88 65.9
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.2e-22 109.8 76 68.4
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.6e-22 109.4 76 69.7
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.1e-22 109.0 76 69.7
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 3.6e-22 108.2 76 71.1
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 4.7e-22 107.8 76 69.7
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 8.0e-22 107.1 76 68.4
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.0e-21 106.7 76 69.7
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.4e-21 106.3 76 69.7
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 1.4e-21 106.3 76 69.7
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.4e-21 106.3 76 69.7
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.8e-21 105.9 76 69.7
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.8e-21 105.9 76 69.7
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.8e-21 105.9 76 69.7
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.8e-21 105.9 76 69.7
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.8e-21 105.9 76 69.7
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.8e-21 105.9 76 69.7
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.8e-21 105.9 76 69.7
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.8e-21 105.9 76 73.7
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 2.3e-21 105.5 76 68.4
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 3.0e-21 105.1 76 68.4
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 3.0e-21 105.1 76 69.7
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 3.0e-21 105.1 67 76.1
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 3.0e-21 105.1 76 71.1
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.0e-21 105.1 76 68.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 4.0e-21 104.8 76 69.7
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 5.2e-21 104.4 76 68.4
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 8.8e-21 103.6 76 65.8
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 8.8e-21 103.6 76 65.8
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.0e-20 102.4 67 74.6
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 9.7e-20 100.1 76 63.2
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-19 99.0 71 73.2
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.8e-19 98.6 76 63.2
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 3.7e-19 98.2 76 64.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.8e-18 95.9 76 59.2
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.4e-18 95.5 78 59.0
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 9.1e-18 93.6 76 56.6
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.0e-16 90.1 76 59.2
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.9e-16 88.6 76 55.3
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.8e-16 88.2 76 65.8
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 5.0e-16 87.8 76 64.5
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.5e-15 85.5 70 52.9
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.7e-14 82.0 75 54.7
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 2.7e-14 82.0 78 50.0
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 3.6e-14 81.6 75 54.7
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.0e-13 80.1 76 52.6
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 8.8e-13 77.0 59 66.1
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.4e-12 74.7 77 48.1
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.1e-10 70.1 77 44.2
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.1e-10 70.1 77 44.2
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.8e-10 69.3 76 52.6
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.8e-10 69.3 78 50.0
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.1e-10 68.2 46 76.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.4e-10 67.8 56 58.9
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.7e-08 62.8 64 51.6
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 8.5e-08 60.5 50 56.0


User provided reference genes

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