Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06847 Nelumbo nucifera HOM05D000002 ORTHO05D004433 5.0e-54 214.2 105 100.0
Nn1g01470 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.3e-30 136.3 104 70.2
Nn8g39618 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.8e-27 125.9 83 75.9
SHI32919 Sapria himalayana HOM05D000002 ORTHO05D004433 2.7e-23 112.1 101 53.5
ECA236G5067 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.9e-23 110.9 101 50.5
SHI45609 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-22 110.2 101 52.5
ECA246G3093 Erigeron canadensis HOM05D001467 ORTHO05D001214 1.3e-22 109.8 101 51.5
MD01G1096700 Malus domestica HOM05D000002 ORTHO05D000001 1.3e-22 109.8 105 49.5
SHI14609 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-22 109.8 101 52.5
SHI44323 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-22 109.8 101 52.5
SHI04168 Sapria himalayana HOM05D000002 ORTHO05D004433 2.9e-22 108.6 101 52.5
SHI38827 Sapria himalayana HOM05D000002 ORTHO05D004433 2.9e-22 108.6 101 52.5
ECA247G3536 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.8e-22 108.2 101 51.5
TAR610G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.8e-22 108.2 106 50.0
SHI10489 Sapria himalayana HOM05D000002 ORTHO05D004433 5.0e-22 107.8 101 51.5
SHI32313 Sapria himalayana HOM05D000002 ORTHO05D004433 8.5e-22 107.1 102 52.0
ECA246G2496 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-21 106.7 101 50.5
SHI18328 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-21 105.9 100 53.0
ECA233G1874 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.2e-21 105.1 101 49.5
ECA238G3349 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.2e-21 105.1 104 47.1
ECA240G4274 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.2e-21 105.1 101 49.5
Ah.01g008310 Amaranthus hybridus HOM05D000002 ORTHO05D004433 4.2e-21 104.8 104 51.0
Ah.04g159010 Amaranthus hybridus HOM05D000002 ORTHO05D004433 7.2e-21 104.0 104 51.0
Ah.16g108610 Amaranthus hybridus HOM05D000002 ORTHO05D004433 9.4e-21 103.6 104 51.0
ECA238G4719 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.4e-21 103.6 104 46.2
SHI43060 Sapria himalayana HOM05D000002 ORTHO05D004433 1.2e-20 103.2 101 51.5
SHI05549 Sapria himalayana HOM05D000002 ORTHO05D004433 1.6e-20 102.8 104 46.2
Ah.03g145180 Amaranthus hybridus HOM05D000002 ORTHO05D004433 2.1e-20 102.4 104 50.0
Ah.13g077590 Amaranthus hybridus HOM05D000002 ORTHO05D000001 2.1e-20 102.4 104 50.0
ECA234G1536 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-20 102.4 101 48.5
Ah.13g069620 Amaranthus hybridus HOM05D000002 ORTHO05D004433 3.6e-20 101.7 104 49.0
ECA234G3440 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-19 100.1 101 46.5
SHI45691 Sapria himalayana HOM05D000002 ORTHO05D004433 1.0e-19 100.1 98 51.0
SHI21269 Sapria himalayana HOM05D000002 ORTHO05D004433 1.4e-19 99.8 101 50.5
ECA240G0479 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-19 99.4 101 46.5
MD14G1034300 Malus domestica HOM05D000038 ORTHO05D004433 4.0e-19 98.2 99 48.5
ECA248G3794 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.8e-19 97.4 101 45.5
SHI10029 Sapria himalayana HOM05D000002 ORTHO05D004433 6.8e-19 97.4 85 54.1
ECA233G2071 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.8e-19 97.1 105 43.8
SHI18425 Sapria himalayana HOM05D000002 ORTHO05D004433 1.2e-18 96.7 85 54.1
ECA238G4301 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-18 96.3 99 48.5
ECA246G0537 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-18 96.3 99 46.5
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-18 95.9 100 44.0
ECA248G0687 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-18 95.9 101 42.6
Sopen00g007880 Solanum pennellii HOM05D000002 ORTHO05D004433 3.4e-18 95.1 99 46.5
Ah.16g106880 Amaranthus hybridus HOM05D000002 ORTHO05D004433 4.4e-18 94.7 104 46.2
SHI00406 Sapria himalayana HOM05D000002 ORTHO05D004433 7.5e-18 94.0 85 52.9
Glyma.07G117100 Glycine max HOM05D000002 ORTHO05D004433 2.8e-17 92.0 80 50.0
Sopen11g022850 Solanum pennellii HOM05D000002 ORTHO05D004433 1.8e-16 89.4 102 42.2
Dinv02026 Davidia involucrata HOM05D028709 ORTHO05D004433 3.1e-16 88.6 101 43.6
Prupe.7G032100 Prunus persica HOM05D000002 ORTHO05D004433 4.1e-16 88.2 87 50.6
SHI16256 Sapria himalayana HOM05D000002 ORTHO05D004433 5.4e-16 87.8 77 53.2
SHI06746 Sapria himalayana HOM05D000002 ORTHO05D004433 7.0e-16 87.4 98 42.9
PSO675G3339 Papaver somniferum HOM05D000002 ORTHO05D004433 2.7e-15 85.5 97 42.3
Nn4g23986 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.5e-15 84.7 97 38.1
SHI49936 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-15 84.7 82 54.9
MD01G1222200 Malus domestica HOM05D000002 ORTHO05D004433 7.7e-15 84.0 127 35.4
Sopen09g028980 Solanum pennellii HOM05D000002 ORTHO05D004433 7.7e-15 84.0 104 37.5
Nn1g02075 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.0e-14 83.6 92 40.2
Nn8g39416 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.0e-14 83.6 97 38.1
Oeu035997.1 Olea europaea HOM05D000002 ORTHO05D004433 2.2e-14 82.4 79 53.2
SHI07649 Sapria himalayana HOM05D000002 ORTHO05D004433 3.8e-14 81.6 77 50.6
Sopen09g027930 Solanum pennellii HOM05D000002 ORTHO05D004433 3.8e-14 81.6 99 39.4
SHI04823 Sapria himalayana HOM05D000002 ORTHO05D004433 5.0e-14 81.3 82 52.4
SHI51732 Sapria himalayana HOM05D000002 ORTHO05D000001 6.5e-14 80.9 79 53.2
ECA233G2777 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-13 80.1 88 43.2
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 1.1e-13 80.1 79 50.6
Prupe.2G033500 Prunus persica HOM05D000002 ORTHO05D004433 1.5e-13 79.7 96 43.8
Cc04_g10140 Coffea canephora HOM05D000002 ORTHO05D004433 3.2e-13 78.6 99 41.4
Nn3g20324 Nelumbo nucifera HOM05D000002 ORTHO05D004433 4.2e-13 78.2 91 37.4
Oeu055579.1 Olea europaea HOM05D000002 ORTHO05D004433 4.2e-13 78.2 79 50.6
Sopen03g007650 Solanum pennellii HOM05D000002 ORTHO05D004433 4.2e-13 78.2 99 38.4
Gohir.D08G274150 Gossypium hirsutum HOM05D000002 ORTHO05D004433 9.5e-13 77.0 96 37.5
Gorai.004G292700 Gossypium raimondii HOM05D000002 ORTHO05D004433 9.5e-13 77.0 96 37.5
Nn1g09492 Nelumbo nucifera HOM05D000002 ORTHO05D004433 9.5e-13 77.0 97 36.1
Nn5g27722 Nelumbo nucifera HOM05D000002 ORTHO05D004433 9.5e-13 77.0 83 45.8
Oeu034209.1 Olea europaea HOM05D000002 ORTHO05D004433 1.6e-12 76.3 79 49.4
Oeu001115.1 Olea europaea HOM05D000002 ORTHO05D004433 2.1e-12 75.9 79 49.4
Oeu022773.1 Olea europaea HOM05D000002 ORTHO05D004433 2.1e-12 75.9 79 49.4
Sopen11g022370 Solanum pennellii HOM05D000036 ORTHO05D005472 2.1e-12 75.9 99 39.4
Glyma.01G070601 Glycine max HOM05D000002 ORTHO05D004433 4.7e-12 74.7 100 38.0
SHI12756 Sapria himalayana HOM05D000002 ORTHO05D004433 4.7e-12 74.7 100 42.0
Nn8g40511 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.1e-12 74.3 98 34.7
BolC8t49584H Brassica oleracea HOM05D000002 ORTHO05D004433 1.0e-11 73.6 99 38.4
Nn8g40101 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.0e-11 73.6 95 40.0
ECA248G0669 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-11 73.2 78 47.4
Nn4g25779 Nelumbo nucifera HOM05D000002 ORTHO05D004433 1.4e-11 73.2 98 33.7
PGSC0003DMG400023646 Solanum tuberosum HOM05D000002 ORTHO05D004433 1.8e-11 72.8 74 44.6
Cpa.g.sc11.103 Carica papaya HOM05D000002 ORTHO05D004433 3.0e-11 72.0 93 35.5
SHI03937 Sapria himalayana HOM05D000002 ORTHO05D004433 3.0e-11 72.0 89 42.7
Sopen09g011970 Solanum pennellii HOM05D008571 ORTHO05D011280 3.0e-11 72.0 99 40.4
ECA234G3041 Erigeron canadensis HOM05D001549 ORTHO05D003098 5.2e-11 71.2 75 42.7
PGSC0003DMG400033163 Solanum tuberosum HOM05D000002 ORTHO05D004433 5.2e-11 71.2 78 39.7
Gohir.D10G094150 Gossypium hirsutum HOM05D000002 ORTHO05D004433 6.8e-11 70.9 78 51.3
PGR044G1025 Punica granatum HOM05D000097 ORTHO05D000041 1.2e-10 70.1 97 40.2
FvH4_5g31431 Fragaria vesca HOM05D000002 ORTHO05D004433 1.5e-10 69.7 103 35.0
SHI22389 Sapria himalayana HOM05D000002 ORTHO05D004433 1.5e-10 69.7 81 46.9
Gorai.012G076500 Gossypium raimondii HOM05D000002 ORTHO05D004433 2.0e-10 69.3 79 41.8
Nn2g13681 Nelumbo nucifera HOM05D000002 ORTHO05D004433 2.0e-10 69.3 76 46.1
Sopen03g027090 Solanum pennellii HOM05D000002 ORTHO05D002065 2.0e-10 69.3 99 41.4
ATR0049G043 Amborella trichopoda HOM05D000097 ORTHO05D000041 3.4e-10 68.6 82 37.8
QL05p063530 Quercus lobata HOM05D000002 ORTHO05D004433 3.4e-10 68.6 69 44.9
PGR044G0355 Punica granatum HOM05D000097 ORTHO05D000041 4.4e-10 68.2 102 37.3
Nn4g24889 Nelumbo nucifera HOM05D000002 ORTHO05D004433 9.8e-10 67.0 80 38.8
Nn1g02545 Nelumbo nucifera HOM05D000002 ORTHO05D004433 2.2e-09 65.9 95 32.6
PGR044G2365 Punica granatum HOM05D000097 ORTHO05D000041 2.2e-09 65.9 98 35.7
CAN.G350.7 Capsicum annuum HOM05D000002 ORTHO05D004433 8.3e-09 63.9 67 41.8
Oeu003015.1 Olea europaea HOM05D000002 ORTHO05D004433 1.1e-08 63.5 68 45.6
RcHm_v2.0_Chr3g0481931 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-08 63.2 100 33.0
CAN.G401.9 Capsicum annuum HOM05D000002 ORTHO05D004433 4.1e-08 61.6 72 41.7
Thecc.03G106900 Theobroma cacao HOM05D000002 ORTHO05D004433 4.1e-08 61.6 77 39.0
ATR0736G044 Amborella trichopoda HOM05D000097 ORTHO05D009673 5.4e-08 61.2 80 37.5
Oeu050054.1 Olea europaea HOM05D000002 ORTHO05D004433 9.2e-08 60.5 79 43.0
GSVIVG01011219001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.6e-07 59.7 85 37.6
Psat2g139560 Pisum sativum HOM05D000097 ORTHO05D000041 3.5e-07 58.5 106 34.9
PGR044G1072 Punica granatum HOM05D000097 ORTHO05D000041 3.5e-07 58.5 80 40.0
Sopen05g013900 Solanum pennellii HOM05D000004 ORTHO05D000002 3.5e-07 58.5 67 46.3
ECA233G2147 Erigeron canadensis HOM05D000509 ORTHO05D004433 4.5e-07 58.2 55 45.5
CSS0021348 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004433 7.7e-07 57.4 50 50.0
PGR044G1153 Punica granatum HOM05D000097 ORTHO05D000041 7.7e-07 57.4 80 40.0
RcHm_v2.0_Chr7g0230661 Rosa chinensis HOM05D000097 ORTHO05D000041 7.7e-07 57.4 94 34.0
TAR625G0793 Trochodendron aralioides HOM05D000097 ORTHO05D000041 7.7e-07 57.4 113 31.0
Oeu051241.1 Olea europaea HOM05D000002 ORTHO05D004433 1.0e-06 57.0 69 50.7
ECA247G1586 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-06 56.6 55 45.5
SHI09919 Sapria himalayana HOM05D000002 ORTHO05D004433 1.3e-06 56.6 47 55.3
FvH4_6g44572 Fragaria vesca HOM05D000097 ORTHO05D009232 1.7e-06 56.2 94 34.0
CSS0046925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004433 2.3e-06 55.8 51 47.1
CiPaw.08G098800 Carya illinoinensis HOM05D000002 ORTHO05D004433 2.9e-06 55.5 99 35.4
ECA232G4651 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-06 55.5 61 41.0
RcHm_v2.0_Chr7g0230781 Rosa chinensis HOM05D000097 ORTHO05D009232 3.8e-06 55.1 87 31.0
SHI39435 Sapria himalayana HOM05D000002 ORTHO05D004433 3.8e-06 55.1 46 52.2
SHI39437 Sapria himalayana HOM05D000002 ORTHO05D004433 3.8e-06 55.1 46 52.2
SHI47496 Sapria himalayana HOM05D000002 ORTHO05D004433 3.8e-06 55.1 46 52.2
FAN14G0264 Fragaria x ananassa HOM05D000097 ORTHO05D000041 5.0e-06 54.7 92 31.5
Lsat_1_v5_gn_4_123500 Lactuca sativa HOM05D000002 ORTHO05D004433 5.0e-06 54.7 59 49.2
SHI02071 Sapria himalayana HOM05D000002 ORTHO05D004433 5.0e-06 54.7 54 48.1
FAN18G4572 Fragaria x ananassa HOM05D000097 ORTHO05D009232 6.6e-06 54.3 86 39.5
GSVIVG01011216001 Vitis vinifera HOM05D000097 ORTHO05D000041 6.6e-06 54.3 88 36.4
FAN14G1826 Fragaria x ananassa HOM05D000097 ORTHO05D009232 8.6e-06 53.9 94 34.0


User provided reference genes

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