Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 5.4e-170 600.9 303 100.0
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.4e-154 549.7 305 89.5
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 9.3e-154 547.0 305 89.2
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 6.0e-153 544.3 305 85.9
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.3e-151 538.1 304 84.5
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.3e-150 536.6 304 86.5
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 1.3e-150 536.6 304 87.2
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.6e-150 536.2 304 87.5
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 87.2
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 3.7e-150 535.0 304 87.2
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 86.6
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 86.9
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 6.2e-150 534.3 305 86.2
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 6.2e-150 534.3 305 84.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 8.1e-150 533.9 305 85.6
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.1e-149 533.5 305 86.6
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 86.2
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 86.9
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 86.9
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 86.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.8e-147 525.0 304 85.2
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 4.9e-147 524.6 305 82.6
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 8.4e-147 523.9 305 82.6
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.1e-146 523.5 305 83.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.4e-146 523.1 304 83.9
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.9
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 81.3
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 85.2
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 81.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 83.6
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 84.6
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 9.3e-146 520.4 305 81.0
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 9.3e-146 520.4 305 83.6
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 9.3e-146 520.4 305 81.0
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 9.3e-146 520.4 301 85.4
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 83.6
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 83.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 3.5e-145 518.5 305 83.3
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 4.6e-145 518.1 305 84.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 6.0e-145 517.7 305 82.0
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 6.0e-145 517.7 305 83.3
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 81.6
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 83.3
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.3e-144 516.5 305 82.0
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 81.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 83.6
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.9e-144 515.0 303 84.8
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 6.7e-144 514.2 307 79.8
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 8.7e-144 513.8 305 83.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 8.7e-144 513.8 305 81.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.5e-143 513.1 326 79.4
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 81.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 81.0
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 79.7
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 83.9
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.6
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 79.7
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 80.0
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 7.4e-143 510.8 304 79.9
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 7.4e-143 510.8 304 80.6
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 81.0
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 80.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 82.6
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 2.1e-142 509.2 305 81.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 2.8e-142 508.8 305 80.0
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 80.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 81.3
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 80.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 82.3
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.4e-141 506.5 300 83.0
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 6.9e-141 504.2 302 83.4
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 9.0e-141 503.8 305 78.4
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.2e-140 503.4 305 81.0
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 2.0e-140 502.7 305 80.7
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 2.6e-140 502.3 305 79.0
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 5.9e-140 501.1 305 78.7
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 7.6e-140 500.7 305 78.4
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.2e-139 499.2 305 81.6
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 5.0e-139 498.0 305 78.7
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.5e-138 495.7 305 81.6
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 5.5e-138 494.6 307 79.5
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 7.2e-138 494.2 302 80.5
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.2e-137 493.4 308 77.6
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.6e-137 493.0 303 77.2
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.0e-136 490.3 305 77.0
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.3e-136 490.0 304 79.9
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.8e-136 489.6 305 76.7
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.8e-136 489.6 305 76.7
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.0e-136 488.8 305 76.7
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 3.0e-136 488.8 372 67.2
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 76.4
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 9.7e-135 483.8 303 79.5
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.6e-134 483.0 307 74.9
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.2e-134 482.6 302 76.5
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 5.3e-133 478.0 306 73.9
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 5.3e-133 478.0 306 73.9
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 5.3e-133 478.0 306 73.9
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 5.3e-133 478.0 305 79.3
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.2e-132 476.9 306 74.2
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.5e-132 476.5 305 74.1
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.6e-132 475.7 330 70.9
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 5.9e-132 474.6 307 73.3
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 7.7e-132 474.2 307 73.0
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.0e-131 473.8 307 74.3
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 2.9e-131 472.2 307 73.9
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.1e-130 470.3 304 76.6
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.1e-130 470.3 304 76.6
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 7.2e-130 467.6 304 76.0
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 7.2e-130 467.6 304 76.3
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.4e-128 463.4 388 63.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 2.5e-122 442.6 306 69.3
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 7.9e-121 437.6 304 68.8
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 4.1e-117 425.2 304 66.4
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.0e-116 422.9 300 67.7
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 8.8e-112 407.5 301 65.4
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 2.2e-110 402.9 303 65.7
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 7.0e-109 397.9 305 67.9
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 7.7e-108 394.4 261 77.4
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.3e-107 393.7 235 83.8
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 3.1e-101 372.5 309 59.9
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.0e-96 357.5 225 80.0
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.2e-94 349.7 225 75.1
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 7.0e-93 344.7 228 79.4
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 4.7e-89 332.0 207 77.3
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 5.2e-72 275.4 186 73.1
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 6.0e-68 261.9 143 86.0
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 4.7e-65 252.3 149 77.2
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.5e-63 247.3 181 68.5
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.1e-56 224.6 154 70.1
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 2.9e-54 216.5 297 46.1
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 4.9e-54 215.7 153 68.0
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 4.0e-40 169.5 83 90.4
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 5.3e-40 169.1 85 90.6
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 2.0e-39 167.2 80 93.8
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 7.6e-39 165.2 79 93.7
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.3e-38 164.5 203 47.8
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 4.9e-38 162.5 80 88.8
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 4.2e-37 159.5 137 54.7
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 1.8e-35 154.1 297 33.0
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.9e-35 152.9 125 59.2
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 8.7e-35 151.8 304 34.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 7.6e-31 138.7 79 82.3
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 1.3e-27 127.9 82 72.0
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 4.1e-24 116.3 58 89.7
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 5.5e-21 105.9 64 76.6
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 3.0e-19 100.1 290 32.8
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 6.7e-19 99.0 60 76.7
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.9e-18 97.4 74 77.0
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.6e-15 87.0 237 28.7


User provided reference genes

Program Settings