Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.3e-168 595.5 307 100.0
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.3e-168 595.5 307 100.0
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.0e-119 433.0 298 76.2
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.1e-117 425.2 275 81.1
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 9.2e-117 424.1 273 80.6
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.2e-116 423.7 274 80.7
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.7e-116 422.5 274 79.9
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-114 417.2 275 79.3
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-114 417.2 275 79.3
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.5e-114 416.8 274 79.2
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 1.5e-114 416.8 274 78.5
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.3e-114 415.6 271 79.7
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 7.3e-114 414.5 274 78.5
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 5.2e-112 408.3 275 77.8
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 6.8e-112 407.9 275 77.8
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.5e-111 406.8 274 75.5
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 2.0e-111 406.4 275 77.5
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 2.0e-111 406.4 275 77.5
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 2.6e-111 406.0 275 78.2
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 9.9e-111 404.1 277 75.8
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 2.2e-110 402.9 276 75.4
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 2.2e-110 402.9 274 74.5
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.1e-109 400.6 275 76.7
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.2e-109 399.1 277 75.5
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.2e-109 399.1 277 75.5
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 4.1e-109 398.7 274 74.5
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 7.1e-109 397.9 275 76.0
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 9.2e-109 397.5 276 75.4
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 9.2e-109 397.5 275 76.4
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 1.2e-108 397.1 272 76.1
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 1.2e-108 397.1 275 75.6
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 2.1e-108 396.4 277 74.4
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.7e-108 396.0 275 76.4
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 4.6e-108 395.2 274 73.4
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 7.8e-108 394.4 278 73.4
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.0e-107 394.0 273 76.6
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 1.3e-107 393.7 275 74.9
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-107 393.3 280 72.5
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 1.7e-107 393.3 275 74.2
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 3.0e-107 392.5 277 74.0
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.9e-107 392.1 272 77.2
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 3.9e-107 392.1 280 73.6
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 5.1e-107 391.7 275 75.6
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 6.6e-107 391.3 272 77.2
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 6.6e-107 391.3 270 74.4
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 6.6e-107 391.3 275 74.2
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 8.6e-107 391.0 280 72.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 1.1e-106 390.6 278 74.8
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 3.3e-106 389.0 271 74.9
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 4.3e-106 388.7 277 72.6
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 7.3e-106 387.9 274 74.5
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.2e-105 387.1 276 72.1
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-105 387.1 281 72.2
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-105 387.1 281 72.2
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.8e-105 386.0 281 71.5
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 4.7e-105 385.2 275 74.5
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 6.2e-105 384.8 278 73.7
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 6.2e-105 384.8 275 72.4
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.1e-104 384.0 274 71.5
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 1.1e-104 384.0 277 74.4
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.1e-104 382.5 272 73.9
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 4.0e-104 382.1 284 69.7
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 6.8e-104 381.3 275 75.6
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 8.9e-104 380.9 273 72.9
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.6e-103 379.4 313 67.4
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 3.4e-103 379.0 274 71.5
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 3.4e-103 379.0 275 72.7
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 4.4e-103 378.6 277 72.6
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 4.4e-103 378.6 277 72.9
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 7.6e-103 377.9 332 63.9
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 9.9e-103 377.5 272 72.1
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.3e-102 377.1 295 69.5
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 1.3e-102 377.1 276 71.4
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 1.3e-102 377.1 278 71.6
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.3e-102 377.1 271 74.2
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.2e-102 376.3 276 71.7
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.2e-102 376.3 276 70.7
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 2.9e-102 375.9 270 72.6
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 2.9e-102 375.9 273 70.7
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 6.4e-102 374.8 273 70.0
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.1e-101 374.0 276 71.4
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 1.9e-101 373.2 271 70.1
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.9e-101 373.2 276 70.7
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.4e-101 372.9 274 73.0
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 4.2e-101 372.1 257 74.7
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.2e-100 370.5 300 68.0
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 3.5e-100 369.0 277 70.0
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 6.0e-100 368.2 218 83.5
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 7.8e-100 367.9 275 70.9
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 7.8e-100 367.9 269 70.6
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 1.9e-98 363.2 274 70.4
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 2.5e-98 362.8 272 70.2
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 2.5e-98 362.8 272 70.2
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 7.3e-98 361.3 281 68.7
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 7.3e-98 361.3 252 73.0
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 1.3e-97 360.5 281 69.8
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.6e-97 360.1 274 68.2
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 1.6e-97 360.1 272 69.5
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 2.1e-97 359.8 273 70.0
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 2.8e-97 359.4 272 69.5
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 2.8e-97 359.4 272 69.5
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.4e-96 357.1 274 67.9
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 1.4e-96 357.1 272 69.1
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 2.4e-96 356.3 291 66.0
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 5.3e-96 355.1 270 69.6
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 9.0e-96 354.4 275 68.7
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 1.5e-95 353.6 280 68.2
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 2.0e-95 353.2 273 68.5
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 2.6e-95 352.8 271 69.7
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 4.5e-95 352.1 324 60.2
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 4.5e-95 352.1 324 60.2
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 5.8e-95 351.7 270 68.1
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.7e-94 350.1 275 65.8
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 2.9e-94 349.4 275 68.4
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 2.4e-93 346.3 277 65.7
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 4.2e-93 345.5 271 66.4
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 4.6e-92 342.0 213 80.3
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 4.6e-92 342.0 275 65.1
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.3e-89 334.0 274 66.8
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 6.2e-89 331.6 332 57.2
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 8.1e-89 331.3 214 73.8
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.1e-85 320.9 307 59.6
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.3e-83 313.9 272 62.5
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.9e-83 312.4 250 64.4
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 6.7e-83 311.6 278 60.4
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 8.7e-83 311.2 277 63.2
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 3.3e-82 309.3 202 75.2
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.3e-81 307.4 210 75.2
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.8e-81 306.2 209 69.9
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.7e-81 305.8 281 61.2
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 6.9e-80 301.6 231 68.4
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 9.0e-80 301.2 229 68.1
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.0e-78 297.7 213 67.6
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.9e-77 293.5 222 65.3
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 2.1e-76 290.0 201 68.2
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 3.5e-76 289.3 264 62.1
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 4.6e-76 288.9 209 72.2
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 5.7e-74 282.0 265 59.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 1.3e-73 280.8 171 79.5
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.8e-73 279.6 197 71.6
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.2e-71 274.2 185 76.8
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 3.6e-68 262.7 191 72.8
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.7e-57 227.3 180 65.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 2.0e-55 220.3 218 50.5
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 7.7e-55 218.4 204 52.5
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 6.7e-51 205.3 150 68.7
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 3.5e-47 193.0 229 46.7
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 2.8e-41 173.3 161 59.0
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 4.5e-39 166.0 239 39.7
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 2.0e-23 114.0 267 35.2
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 2.1e-20 104.0 59 88.1
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 2.7e-15 87.0 49 89.8
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.9e-13 80.9 48 85.4
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.2e-12 78.2 44 86.4
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.0e-11 75.1 43 76.7
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 6.8e-11 72.4 56 67.9
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 6.6e-06 55.8 29 82.8


User provided reference genes

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