Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06782 Nelumbo nucifera HOM05D018535 ORTHO05D019031 1.7e-38 162.2 81 100.0
TAR627G0025 Trochodendron aralioides HOM05D018535 ORTHO05D019031 3.2e-24 114.8 85 67.1
Nn1g03873 Nelumbo nucifera HOM05D018535 ORTHO05D019031 9.2e-24 113.2 89 68.5
Potri.001G408100 Populus trichocarpa HOM05D018535 ORTHO05D019031 3.0e-14 81.6 87 43.7
Ciclev10010059m.g Citrus clementina HOM05D018535 ORTHO05D019031 8.1e-12 73.6 84 51.2
RhsimUnG0258100 Rhododendron simsii HOM05D001554 ORTHO05D001481 1.2e-10 69.7 84 42.9
RcHm_v2.0_Chr2g0161441 Rosa chinensis HOM05D000831 ORTHO05D000660 7.1e-08 60.5 85 45.9
QL08p037097 Quercus lobata HOM05D000831 ORTHO05D000660 2.7e-07 58.5 82 35.4
CANSAT11G0426 Cannabis sativa HOM05D000831 ORTHO05D000660 3.5e-07 58.2 76 44.7
Lsat_1_v5_gn_3_40481 Lactuca sativa HOM05D000831 ORTHO05D000660 3.5e-07 58.2 87 43.7
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 3.5e-07 58.2 64 48.4
MD09G1096800 Malus domestica HOM05D000831 ORTHO05D000660 4.6e-07 57.8 82 43.9
QL08p037071 Quercus lobata HOM05D000831 ORTHO05D000660 6.0e-07 57.4 82 41.5
CANSAT11G1852 Cannabis sativa HOM05D000831 ORTHO05D000660 7.8e-07 57.0 76 44.7
Aa31LG6G7850 Aethionema arabicum HOM05D000831 ORTHO05D000660 1.0e-06 56.6 78 42.3
QL08p037074 Quercus lobata HOM05D000831 ORTHO05D000660 1.0e-06 56.6 81 42.0
AUR62029301 Chenopodium quinoa HOM05D000831 ORTHO05D000660 1.3e-06 56.2 83 42.2
Glyma.12G200600 Glycine max HOM05D000831 ORTHO05D000660 1.7e-06 55.8 80 37.5
Potri.019G117402 Populus trichocarpa HOM05D000831 ORTHO05D000660 1.7e-06 55.8 79 43.0
QL08p037077 Quercus lobata HOM05D000831 ORTHO05D000660 1.7e-06 55.8 87 33.3
Thecc.07G070300 Theobroma cacao HOM05D064583 ORTHO05D019031 1.7e-06 55.8 86 43.0
TAR629G0014 Trochodendron aralioides HOM05D000831 ORTHO05D000660 1.7e-06 55.8 80 48.8
QL08p017355 Quercus lobata HOM05D000831 ORTHO05D000660 2.3e-06 55.5 79 45.6
QL08p017373 Quercus lobata HOM05D000831 ORTHO05D000660 2.3e-06 55.5 79 45.6
QL08p017396 Quercus lobata HOM05D000831 ORTHO05D000660 2.3e-06 55.5 79 45.6
RcHm_v2.0_Chr2g0161481 Rosa chinensis HOM05D000831 ORTHO05D000660 2.3e-06 55.5 83 44.6
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 2.3e-06 55.5 88 40.9
CSS0027845 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 3.0e-06 55.1 81 49.4
CAN.G508.6 Capsicum annuum HOM05D000831 ORTHO05D000660 3.0e-06 55.1 78 47.4
AUR62015588 Chenopodium quinoa HOM05D000831 ORTHO05D000660 3.0e-06 55.1 83 41.0
Dinv15499 Davidia involucrata HOM05D000831 ORTHO05D000660 3.0e-06 55.1 80 36.2
Oeu046194.1 Olea europaea HOM05D000831 ORTHO05D000660 3.0e-06 55.1 80 37.5
Os07g0558900 Oryza sativa ssp. japonica HOM05D018535 ORTHO05D301211 3.0e-06 55.1 76 44.7
RcHm_v2.0_Chr2g0161461 Rosa chinensis HOM05D000831 ORTHO05D000660 3.0e-06 55.1 83 43.4
RcHm_v2.0_Chr2g0161491 Rosa chinensis HOM05D000831 ORTHO05D000660 3.0e-06 55.1 84 41.7
PGSC0003DMG400018375 Solanum tuberosum HOM05D000831 ORTHO05D000660 3.0e-06 55.1 78 44.9
CANSAT11G1378 Cannabis sativa HOM05D000831 ORTHO05D000660 3.9e-06 54.7 76 43.4
CAN.G508.5 Capsicum annuum HOM05D000831 ORTHO05D000660 3.9e-06 54.7 78 47.4
FvH4_6g44470 Fragaria vesca HOM05D000831 ORTHO05D000660 3.9e-06 54.7 84 40.5
Lalb_Chr19g0135521 Lupinus albus HOM05D000831 ORTHO05D000660 3.9e-06 54.7 80 45.0
Prupe.3G229000 Prunus persica HOM05D000831 ORTHO05D000660 3.9e-06 54.7 84 44.0
TAR629G0738 Trochodendron aralioides HOM05D000831 ORTHO05D000660 3.9e-06 54.7 80 46.2
GSVIVG01029998001 Vitis vinifera HOM05D000831 ORTHO05D000660 3.9e-06 54.7 49 55.1
MD09G1097000 Malus domestica HOM05D000831 ORTHO05D000660 5.1e-06 54.3 85 38.8
Haze_09537 Corylus avellana HOM05D000831 ORTHO05D000660 6.6e-06 53.9 81 45.7
Lalb_Chr19g0135531 Lupinus albus HOM05D000831 ORTHO05D000660 6.6e-06 53.9 80 45.0
Prupe.3G229400 Prunus persica HOM05D000831 ORTHO05D000660 6.6e-06 53.9 84 44.0
Prupe.3G229500 Prunus persica HOM05D000831 ORTHO05D000660 6.6e-06 53.9 84 42.9
PGSC0003DMG400018377 Solanum tuberosum HOM05D000831 ORTHO05D000660 6.6e-06 53.9 78 43.6
PGSC0003DMG400018397 Solanum tuberosum HOM05D000831 ORTHO05D000660 6.6e-06 53.9 78 44.9
TWI36G0282 Tripterygium wilfordii HOM05D000831 ORTHO05D000660 6.6e-06 53.9 80 40.0
TWI36G1218 Tripterygium wilfordii HOM05D000831 ORTHO05D000660 6.6e-06 53.9 80 41.2
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 8.6e-06 53.5 69 44.9


User provided reference genes

Program Settings