Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.9e-104 382.5 193 100.0
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.8e-65 253.1 156 82.7
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.5e-64 250.0 156 81.4
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 5.9e-61 238.0 154 76.0
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.5e-59 233.4 153 75.8
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 2.5e-59 232.6 154 74.0
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 2.1e-58 229.6 146 78.8
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 1.0e-57 227.3 154 73.4
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 2.3e-57 226.1 155 72.3
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 3.9e-57 225.3 165 71.5
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 3.9e-57 225.3 158 72.8
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 3.9e-57 225.3 162 69.8
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 1.1e-56 223.8 155 72.3
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 5.7e-56 221.5 161 70.2
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 9.7e-56 220.7 158 70.9
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 1.3e-55 220.3 157 70.1
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 1.7e-55 219.9 160 68.8
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.7e-55 219.9 147 76.9
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 2.2e-55 219.5 155 71.0
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.8e-55 219.2 155 71.0
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 4.8e-55 218.4 153 69.3
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 6.3e-55 218.0 124 83.9
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.1e-54 217.2 155 69.7
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.4e-54 216.9 158 69.6
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.8e-54 216.5 153 70.6
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 2.4e-54 216.1 153 68.6
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 5.3e-54 214.9 156 69.2
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 7.0e-54 214.5 153 69.3
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 7.0e-54 214.5 158 67.7
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 9.1e-54 214.2 156 69.2
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 1.2e-53 213.8 155 68.4
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 2.0e-53 213.0 161 65.8
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 3.5e-53 212.2 153 65.4
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 3.5e-53 212.2 159 64.8
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 3.5e-53 212.2 155 69.7
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 4.5e-53 211.8 153 68.0
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 5.9e-53 211.5 153 68.6
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 5.9e-53 211.5 158 67.1
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 5.9e-53 211.5 158 66.5
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 7.7e-53 211.1 155 70.3
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.0e-52 210.7 155 66.5
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 1.0e-52 210.7 158 66.5
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.3e-52 210.3 155 66.5
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 2.2e-52 209.5 156 67.9
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 2.9e-52 209.1 158 67.1
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 3.8e-52 208.8 155 63.9
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.1e-51 207.2 155 65.8
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.5e-51 206.8 159 66.0
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 1.5e-51 206.8 156 69.2
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 1.5e-51 206.8 153 66.7
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 1.9e-51 206.5 158 67.7
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 3.2e-51 205.7 153 68.0
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.2e-51 205.7 155 63.9
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 3.2e-51 205.7 167 62.9
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 4.2e-51 205.3 157 65.0
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 5.5e-51 204.9 155 65.8
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.2e-51 204.5 155 65.8
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 9.4e-51 204.1 155 65.2
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 1.2e-50 203.8 156 66.7
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 1.2e-50 203.8 159 63.5
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 3.6e-50 202.2 153 63.4
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 4.7e-50 201.8 154 66.2
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 6.1e-50 201.4 151 64.9
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 6.1e-50 201.4 158 64.6
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 8.0e-50 201.1 154 66.9
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 8.0e-50 201.1 161 65.2
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 8.0e-50 201.1 162 63.6
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.0e-49 200.7 155 65.2
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.0e-49 200.7 121 79.3
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.0e-49 200.7 151 64.2
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.3e-49 199.5 160 64.4
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.3e-49 199.5 153 62.7
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 2.3e-49 199.5 153 60.8
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 2.3e-49 199.5 152 65.8
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 3.0e-49 199.1 158 66.5
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.0e-49 198.7 154 63.6
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.0e-49 198.7 157 65.0
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.2e-49 198.4 157 65.0
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 5.2e-49 198.4 164 62.2
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 6.8e-49 198.0 158 64.6
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 8.8e-49 197.6 156 64.1
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 8.8e-49 197.6 158 63.3
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.6e-48 196.1 160 64.4
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 7.5e-48 194.5 160 63.8
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 7.5e-48 194.5 161 63.4
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 9.7e-48 194.1 162 59.9
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 9.7e-48 194.1 160 63.1
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 2.8e-47 192.6 160 63.8
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 3.7e-47 192.2 156 64.1
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 3.7e-47 192.2 156 63.5
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 4.8e-47 191.8 157 62.4
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 1.4e-46 190.3 157 59.9
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.4e-46 190.3 154 61.0
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 1.4e-46 190.3 154 61.0
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.1e-46 189.1 165 57.6
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 4.1e-46 188.7 156 62.2
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 5.3e-46 188.3 170 57.6
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 5.3e-46 188.3 152 63.8
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 1.2e-45 187.2 156 61.5
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.6e-45 186.8 153 61.4
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 2.7e-45 186.0 116 72.4
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 2.7e-45 186.0 153 58.2
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 3.5e-45 185.7 166 59.6
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 5.9e-45 184.9 151 58.9
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 5.9e-45 184.9 118 72.0
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 7.7e-45 184.5 166 58.4
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 7.7e-45 184.5 166 59.0
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 7.7e-45 184.5 166 59.0
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 7.7e-45 184.5 155 60.6
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.0e-44 184.1 166 58.4
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.0e-44 184.1 166 58.4
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 1.0e-44 184.1 157 61.1
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.2e-44 183.0 165 57.0
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 6.5e-44 181.4 166 56.6
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 6.5e-44 181.4 164 56.7
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 8.5e-44 181.0 171 55.6
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 8.5e-44 181.0 165 56.4
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 1.1e-43 180.6 165 55.8
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.1e-43 180.6 168 56.5
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 1.1e-43 180.6 155 56.8
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 1.5e-43 180.3 166 56.6
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.5e-43 179.5 168 56.0
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.5e-43 179.5 164 56.7
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 3.2e-43 179.1 166 56.6
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 3.2e-43 179.1 118 71.2
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.5e-43 178.3 164 55.5
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 5.5e-43 178.3 164 54.9
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 9.4e-43 177.6 155 56.8
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 9.4e-43 177.6 155 56.8
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 9.4e-43 177.6 168 53.0
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 9.4e-43 177.6 168 53.0
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 9.4e-43 177.6 167 56.3
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 9.4e-43 177.6 168 56.0
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.6e-42 176.8 167 54.5
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.6e-42 176.8 167 54.5
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.6e-42 176.8 169 55.0
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 2.7e-42 176.0 159 59.7
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 4.7e-42 175.3 167 53.3
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 1.4e-41 173.7 166 53.6
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 1.4e-41 173.7 166 53.6
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 1.4e-41 173.7 166 53.6
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 1.4e-41 173.7 166 53.6
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 4.0e-41 172.2 164 53.7
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 4.4e-40 168.7 155 54.2
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.1e-38 164.1 149 55.0
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 1.1e-38 164.1 155 53.5
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.4e-38 162.9 155 52.3
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 7.7e-37 157.9 164 50.6
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.0e-36 157.5 137 60.6
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 3.8e-36 155.6 137 59.9
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 3.8e-36 155.6 137 59.9
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 5.0e-36 155.2 143 51.0
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.5e-35 153.7 155 54.2
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.9e-35 153.3 155 54.2
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.5e-35 152.9 142 57.7
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.6e-34 150.2 155 52.9
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 3.4e-32 142.5 157 44.6
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 4.9e-31 138.7 117 52.1
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 7.0e-30 134.8 109 56.9
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 7.3e-27 124.8 191 36.6
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 9.5e-27 124.4 80 72.5
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 4.4e-24 115.5 118 46.6
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 4.9e-23 112.1 113 49.6
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 6.4e-23 111.7 69 73.9
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-21 106.7 123 41.5
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.1e-19 100.9 151 42.4
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 2.1e-18 96.7 67 70.1
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 5.2e-17 92.0 75 53.3


User provided reference genes

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