Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06670 Nelumbo nucifera HOM05D000613 ORTHO05D281552 1.1e-37 159.8 105 100.0
Nn5g28289 Nelumbo nucifera HOM05D000613 ORTHO05D276985 3.3e-26 121.7 102 60.8
Nn4g26190 Nelumbo nucifera HOM05D000613 ORTHO05D000446 9.7e-26 120.2 65 87.7
Nn4g24006 Nelumbo nucifera HOM05D000028 ORTHO05D000701 1.4e-24 116.3 63 85.7
Nn4g25728 Nelumbo nucifera HOM05D000613 ORTHO05D000446 1.2e-23 113.2 66 80.3
Nn1g02159 Nelumbo nucifera HOM05D000613 ORTHO05D000446 6.3e-09 64.3 65 49.2
TAR365G0724 Trochodendron aralioides HOM05D000613 ORTHO05D000446 2.4e-08 62.4 68 51.5
Dinv44478 Davidia involucrata HOM05D000613 ORTHO05D000446 4.1e-08 61.6 68 50.0
TAR636G2979 Trochodendron aralioides HOM05D000613 ORTHO05D000446 9.2e-08 60.5 51 60.8
THA.LOC104822228 Tarenaya hassleriana HOM05D000613 ORTHO05D000446 1.6e-07 59.7 62 45.2
Manes.03G185000 Manihot esculenta HOM05D000613 ORTHO05D000446 2.0e-07 59.3 56 55.4
Sc13g0003940 Simmondsia chinensis HOM05D000613 ORTHO05D000446 4.5e-07 58.2 68 47.1
Cfa015579 Carpinus fangiana HOM05D000613 ORTHO05D000446 5.9e-07 57.8 59 50.8
COL.COLO4_09130 Corchorus olitorius HOM05D000613 ORTHO05D000446 5.9e-07 57.8 53 52.8
Actinidia25366 Actinidia chinensis HOM05D000613 ORTHO05D000446 1.0e-06 57.0 66 42.4
PSO170G4018 Papaver somniferum HOM05D000613 ORTHO05D000446 1.0e-06 57.0 71 45.1
Rhsim04G0207300 Rhododendron simsii HOM05D000613 ORTHO05D000446 1.0e-06 57.0 65 47.7
QL12p022357 Quercus lobata HOM05D000613 ORTHO05D000446 1.3e-06 56.6 62 50.0
TAR362G0655 Trochodendron aralioides HOM05D000613 ORTHO05D000446 1.3e-06 56.6 67 50.7
TAR633G0117 Trochodendron aralioides HOM05D000613 ORTHO05D000446 1.3e-06 56.6 68 52.9
Gohir.A10G114600 Gossypium hirsutum HOM05D000613 ORTHO05D000446 2.3e-06 55.8 65 46.2
RcHm_v2.0_Chr6g0291431 Rosa chinensis HOM05D000613 ORTHO05D000446 2.3e-06 55.8 63 46.0
Actinidia40193 Actinidia chinensis HOM05D000613 ORTHO05D000446 2.9e-06 55.5 67 46.3
Gohir.D10G153100 Gossypium hirsutum HOM05D000613 ORTHO05D000446 2.9e-06 55.5 65 44.6
Gorai.011G169700 Gossypium raimondii HOM05D000613 ORTHO05D000446 2.9e-06 55.5 65 44.6
PSO407G0415 Papaver somniferum HOM05D000613 ORTHO05D000446 2.9e-06 55.5 71 43.7
AUR62030078 Chenopodium quinoa HOM05D000613 ORTHO05D000446 3.8e-06 55.1 39 56.4
MD11G1288800 Malus domestica HOM05D000613 ORTHO05D000446 3.8e-06 55.1 45 55.6
GSVIVG01034295001 Vitis vinifera HOM05D000613 ORTHO05D000446 3.8e-06 55.1 59 49.2
Thecc.04G221200 Theobroma cacao HOM05D000613 ORTHO05D000446 5.0e-06 54.7 65 44.6
Gohir.D11G126700 Gossypium hirsutum HOM05D000613 ORTHO05D000446 6.6e-06 54.3 38 60.5
Gorai.007G135400 Gossypium raimondii HOM05D000613 ORTHO05D000446 6.6e-06 54.3 38 60.5
vmacro08273 Vaccinium macrocarpon HOM05D000613 ORTHO05D000446 6.6e-06 54.3 58 51.7
Duzib133G0725 Durio zibethinus HOM05D000613 ORTHO05D000446 8.6e-06 53.9 57 47.4
FAN27G3376 Fragaria x ananassa HOM05D000613 ORTHO05D000446 8.6e-06 53.9 43 60.5


User provided reference genes

Program Settings