Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00049 Nelumbo nucifera HOM05D003252 ORTHO05D003640 3.0e-54 214.9 107 100.0
Nn1g06668 Nelumbo nucifera HOM05D003252 ORTHO05D003640 3.0e-54 214.9 107 100.0
Nn8g38698 Nelumbo nucifera HOM05D003252 ORTHO05D003640 2.9e-41 171.8 101 88.1
Nn6g35602 Nelumbo nucifera HOM05D003252 ORTHO05D003640 2.7e-23 112.1 101 63.4
Nn1g03690 Nelumbo nucifera HOM05D003252 ORTHO05D003640 1.9e-21 105.9 61 90.2
Aqoxy7G04125 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 2.4e-19 99.0 61 78.7
CANSAT56G4065 Cannabis sativa HOM05D003252 ORTHO05D003640 3.1e-19 98.6 102 54.9
CANSAT46G0002 Cannabis sativa HOM05D003252 ORTHO05D003640 5.3e-19 97.8 102 55.9
Lj3g0017073 Lotus japonicus HOM05D003252 ORTHO05D003640 2.0e-18 95.9 84 63.1
Lalb_Chr13g0299531 Lupinus albus HOM05D003252 ORTHO05D003640 2.6e-18 95.5 67 67.2
TAR636G0880 Trochodendron aralioides HOM05D003252 ORTHO05D003640 5.8e-18 94.4 91 57.1
Atru.chr7.1677 Acer truncatum HOM05D003252 ORTHO05D003640 7.6e-18 94.0 106 54.7
arahy.Tifrunner.gnm1.ann1.25CQ7A Arachis hypogaea HOM05D003252 ORTHO05D003640 6.4e-17 90.9 74 59.5
arahy.Tifrunner.gnm1.ann1.B65556 Arachis hypogaea HOM05D003252 ORTHO05D003640 6.4e-17 90.9 74 59.5
Lj4g0014141 Lotus japonicus HOM05D003252 ORTHO05D003640 6.4e-17 90.9 62 69.4
GSVIVG01015103001 Vitis vinifera HOM05D003252 ORTHO05D003640 8.4e-17 90.5 68 64.7
DCAR_000225 Daucus carota HOM05D003252 ORTHO05D003640 1.9e-16 89.4 61 73.8
CiPaw.03G208300 Carya illinoinensis HOM05D003252 ORTHO05D003640 2.4e-16 89.0 63 63.5
Dinv42374 Davidia involucrata HOM05D003252 ORTHO05D003640 2.4e-16 89.0 98 54.1
Glyma.17G050600 Glycine max HOM05D003252 ORTHO05D003640 2.4e-16 89.0 70 61.4
Manes.16G097000 Manihot esculenta HOM05D003252 ORTHO05D003640 2.4e-16 89.0 107 49.5
TWI63G0970 Tripterygium wilfordii HOM05D003252 ORTHO05D003640 3.2e-16 88.6 96 54.2
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 4.2e-16 88.2 102 50.0
Ca_21312_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 5.5e-16 87.8 61 67.2
QL02p060735 Quercus lobata HOM05D003252 ORTHO05D003640 5.5e-16 87.8 111 47.7
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 5.5e-16 87.8 102 49.0
QL02p060441 Quercus lobata HOM05D003252 ORTHO05D003640 9.3e-16 87.0 111 47.7
ClCG11G001480 Citrullus lanatus HOM05D003252 ORTHO05D003640 1.2e-15 86.7 83 54.2
Dinv25571 Davidia involucrata HOM05D003252 ORTHO05D003640 1.6e-15 86.3 86 52.3
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 2.1e-15 85.9 115 45.2
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 2.1e-15 85.9 97 50.5
Psat4g017400 Pisum sativum HOM05D003252 ORTHO05D003640 2.1e-15 85.9 100 51.0
COL.COLO4_18119 Corchorus olitorius HOM05D003252 ORTHO05D003640 2.7e-15 85.5 60 68.3
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 2.7e-15 85.5 109 44.0
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 2.7e-15 85.5 102 50.0
TPR.G504 Trifolium pratense HOM05D003252 ORTHO05D003640 2.7e-15 85.5 84 54.8
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 4.6e-15 84.7 60 65.0
Medtr4g125530 Medicago truncatula HOM05D003252 ORTHO05D003640 6.0e-15 84.3 93 52.7
Sed0020871 Sechium edule HOM05D003252 ORTHO05D003640 6.0e-15 84.3 98 50.0
PSO210G6784 Papaver somniferum HOM05D003252 ORTHO05D003640 7.9e-15 84.0 106 50.0
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 7.9e-15 84.0 108 51.9
CARHR125300 Cardamine hirsuta HOM05D003252 ORTHO05D003640 1.0e-14 83.6 70 62.9
Manes.03G039000 Manihot esculenta HOM05D003252 ORTHO05D003640 1.0e-14 83.6 98 49.0
Prupe.7G202000 Prunus persica HOM05D003252 ORTHO05D003640 1.0e-14 83.6 103 45.6
Eucgr.C03557 Eucalyptus grandis HOM05D003252 ORTHO05D003640 1.3e-14 83.2 99 46.5
FvH4_1g08350 Fragaria vesca HOM05D003252 ORTHO05D003640 1.3e-14 83.2 88 52.3
Phvul.003G132200 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 1.3e-14 83.2 61 63.9
Cfa003021 Carpinus fangiana HOM05D003252 ORTHO05D003640 1.8e-14 82.8 109 43.1
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 1.8e-14 82.8 94 50.0
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 2.3e-14 82.4 82 57.3
CAN.G198.16 Capsicum annuum HOM05D003252 ORTHO05D003640 2.3e-14 82.4 66 57.6
FAN19G2299 Fragaria x ananassa HOM05D003252 ORTHO05D003640 2.3e-14 82.4 88 52.3
Lj7C684T2 Lonicera japonica HOM05D003252 ORTHO05D003640 2.3e-14 82.4 60 65.0
VMungo1215G3032 Vigna mungo HOM05D003252 ORTHO05D003640 2.3e-14 82.4 90 50.0
Hma1.2p1_0169F.1_g074670 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 3.0e-14 82.0 68 58.8
PGR044G0627 Punica granatum HOM05D003252 ORTHO05D003640 3.0e-14 82.0 74 56.8
Cpa.g.sc28.70 Carica papaya HOM05D003252 ORTHO05D003640 3.9e-14 81.6 68 63.2
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 3.9e-14 81.6 101 46.5
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.9e-14 81.6 102 47.1
Aqoxy7G04115 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 5.1e-14 81.3 99 47.5
Haze_06476 Corylus avellana HOM05D003252 ORTHO05D003640 5.1e-14 81.3 67 62.7
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 5.1e-14 81.3 60 70.0
ECA233G4986 Erigeron canadensis HOM05D003252 ORTHO05D003640 5.1e-14 81.3 67 61.2
MD15G1215300 Malus domestica HOM05D003252 ORTHO05D003640 5.1e-14 81.3 101 51.5
Nitab4.5_0000343g0050 Nicotiana tabacum HOM05D003252 ORTHO05D003640 5.1e-14 81.3 96 46.9
THA.LOC104815326 Tarenaya hassleriana HOM05D003252 ORTHO05D003640 5.1e-14 81.3 106 49.1
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 6.7e-14 80.9 97 48.5
CSS0012521 Camellia sinensis var. sinensis HOM05D003252 ORTHO05D003640 6.7e-14 80.9 61 67.2
FAN23G1755 Fragaria x ananassa HOM05D003252 ORTHO05D003640 6.7e-14 80.9 64 60.9
FAN28G0807 Fragaria x ananassa HOM05D003252 ORTHO05D003640 6.7e-14 80.9 64 60.9
Potri.001G413500 Populus trichocarpa HOM05D003252 ORTHO05D003640 6.7e-14 80.9 62 62.9
Potri.011G125701 Populus trichocarpa HOM05D003252 ORTHO05D003640 6.7e-14 80.9 117 47.0
SGA_v2.0_scaffold385G50444 Striga asiatica HOM05D003252 ORTHO05D003640 6.7e-14 80.9 60 68.3
Actinidia30206 Actinidia chinensis HOM05D000061 ORTHO05D000050 8.7e-14 80.5 60 65.0
Cc06_g11990 Coffea canephora HOM05D003252 ORTHO05D003640 8.7e-14 80.5 105 48.6
Hma1.2p1_0797F.1_g219490 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 8.7e-14 80.5 73 58.9
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 8.7e-14 80.5 65 60.0
Aqoxy3G03348 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 1.1e-13 80.1 70 58.6
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.1e-13 80.1 88 51.1
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 1.1e-13 80.1 102 47.1
PGSC0003DMG400019568 Solanum tuberosum HOM05D003252 ORTHO05D003640 1.1e-13 80.1 93 46.2
TWI32G0380 Tripterygium wilfordii HOM05D003252 ORTHO05D003640 1.1e-13 80.1 60 65.0
MSTRG.10521 Avicennia marina HOM05D003252 ORTHO05D003640 1.5e-13 79.7 60 65.0
Solyc07g041490.3 Solanum lycopersicum HOM05D003252 ORTHO05D003640 1.5e-13 79.7 66 54.5
Sopen07g021020 Solanum pennellii HOM05D003252 ORTHO05D003640 1.5e-13 79.7 66 54.5
Lsat_1_v5_gn_5_141361 Lactuca sativa HOM05D003252 ORTHO05D003640 1.9e-13 79.3 60 63.3
RcHm_v2.0_Chr2g0094401 Rosa chinensis HOM05D003252 ORTHO05D003640 1.9e-13 79.3 84 48.8
Aqoxy7G04119 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 2.5e-13 79.0 61 62.3
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.5e-13 79.0 60 61.7
Oeu010808.1 Olea europaea HOM05D003252 ORTHO05D003640 3.3e-13 78.6 100 49.0
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 4.3e-13 78.2 61 65.6
DCAR_028308 Daucus carota HOM05D003252 ORTHO05D003640 4.3e-13 78.2 112 45.5
Peaxi162Scf00073g00132 Petunia axillaris HOM05D003252 ORTHO05D003640 5.6e-13 77.8 66 56.1
BcaC01g01254 Brassica carinata HOM05D003252 ORTHO05D003640 7.4e-13 77.4 60 66.7
HanXRQChr10g0319651 Helianthus annuus HOM05D003252 ORTHO05D003640 7.4e-13 77.4 94 46.8
Sabra16G0273800 Salix brachista HOM05D003252 ORTHO05D003640 7.4e-13 77.4 61 60.7
Sabra16G0274300 Salix brachista HOM05D003252 ORTHO05D003640 7.4e-13 77.4 61 60.7
Sabra16G0278400 Salix brachista HOM05D003252 ORTHO05D003640 7.4e-13 77.4 61 60.7
Peaxi162Scf00128g00142 Petunia axillaris HOM05D003252 ORTHO05D003640 9.6e-13 77.0 86 48.8
Rhsim03G0229500 Rhododendron simsii HOM05D003252 ORTHO05D003640 9.6e-13 77.0 60 66.7
Aqoxy7G04118 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 1.3e-12 76.6 61 60.7
BcaB04g20425 Brassica carinata HOM05D003252 ORTHO05D003640 1.3e-12 76.6 113 44.2
AUR62011596 Chenopodium quinoa HOM05D003252 ORTHO05D003640 1.6e-12 76.3 64 56.2
Peaxi162Scf00127g00006 Petunia axillaris HOM05D003252 ORTHO05D003640 1.6e-12 76.3 94 45.7
Sabra11G0116400 Salix brachista HOM05D003252 ORTHO05D003640 1.6e-12 76.3 62 59.7
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 2.1e-12 75.9 62 58.1
FAN19G3090 Fragaria x ananassa HOM05D003252 ORTHO05D003640 2.1e-12 75.9 64 57.8
FvH4_1g08360 Fragaria vesca HOM05D003252 ORTHO05D003640 3.7e-12 75.1 64 57.8
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 4.8e-12 74.7 97 48.5
A08p03000 Brassica napus HOM05D003252 ORTHO05D003640 4.8e-12 74.7 60 65.0
BraA08t32332Z Brassica rapa HOM05D003252 ORTHO05D003640 4.8e-12 74.7 60 65.0
Cfa000438 Carpinus fangiana HOM05D003252 ORTHO05D003640 4.8e-12 74.7 66 60.6
Migut.L01549 Erythranthe guttata HOM05D003252 ORTHO05D003640 4.8e-12 74.7 60 65.0
Aqoxy4G00101 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 8.2e-12 73.9 62 58.1
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 8.2e-12 73.9 60 61.7
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 8.2e-12 73.9 60 61.7
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 8.2e-12 73.9 60 61.7
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 8.2e-12 73.9 60 61.7
Ah.01g023250 Amaranthus hybridus HOM05D003252 ORTHO05D003640 1.4e-11 73.2 68 54.4
CiPaw.09G059300 Carya illinoinensis HOM05D003252 ORTHO05D003640 1.4e-11 73.2 66 57.6
AUR62016411 Chenopodium quinoa HOM05D003252 ORTHO05D003640 1.8e-11 72.8 64 53.1
Ah.09g231370 Amaranthus hybridus HOM05D003252 ORTHO05D003640 2.4e-11 72.4 102 43.1
Lsat_1_v5_gn_7_13541 Lactuca sativa HOM05D003252 ORTHO05D003640 2.4e-11 72.4 60 58.3
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 3.1e-11 72.0 63 58.7
arahy.Tifrunner.gnm1.ann1.MZL9F0 Arachis hypogaea HOM05D003252 ORTHO05D003640 3.1e-11 72.0 63 54.0
arahy.Tifrunner.gnm1.ann1.R4HL53 Arachis hypogaea HOM05D003252 ORTHO05D003640 3.1e-11 72.0 63 54.0
vmacro06325 Vaccinium macrocarpon HOM05D003252 ORTHO05D003640 4.0e-11 71.6 60 56.7
Oeu035904.1 Olea europaea HOM05D003252 ORTHO05D003640 5.3e-11 71.2 61 62.3
DCAR_023599 Daucus carota HOM05D003252 ORTHO05D003640 6.9e-11 70.9 61 55.7
Oeu063412.1 Olea europaea HOM05D003252 ORTHO05D003640 6.9e-11 70.9 63 58.7
vmacro06324 Vaccinium macrocarpon HOM05D003252 ORTHO05D003640 6.9e-11 70.9 97 45.4
HPP92_024331 Vanilla planifolia HOM05D003252 ORTHO05D003640 6.9e-11 70.9 100 44.0
FAN26G3461 Fragaria x ananassa HOM05D003252 ORTHO05D003640 9.0e-11 70.5 88 48.9
Glyma.15G176100 Glycine max HOM05D003252 ORTHO05D003640 9.0e-11 70.5 65 50.8
BcaB04g17227 Brassica carinata HOM05D003252 ORTHO05D003640 1.2e-10 70.1 65 55.4
BcaB04g17228 Brassica carinata HOM05D003252 ORTHO05D003640 1.2e-10 70.1 65 55.4
BcaC01g01255 Brassica carinata HOM05D003252 ORTHO05D003640 1.2e-10 70.1 65 55.4
C03p89840 Brassica napus HOM05D003252 ORTHO05D003640 1.2e-10 70.1 65 55.4
BolC3t21305H Brassica oleracea HOM05D003252 ORTHO05D003640 1.2e-10 70.1 65 55.4
CARHR041440 Cardamine hirsuta HOM05D003252 ORTHO05D003640 1.2e-10 70.1 64 57.8
AL1G59220 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 3.4e-10 68.6 60 51.7
Eucgr.K03106 Eucalyptus grandis HOM05D003252 ORTHO05D003640 3.4e-10 68.6 67 53.7
FAN28G2135 Fragaria x ananassa HOM05D003252 ORTHO05D003640 3.4e-10 68.6 99 44.4
Migut.L01550 Erythranthe guttata HOM05D003252 ORTHO05D003640 4.5e-10 68.2 60 56.7
Oeu035905.1 Olea europaea HOM05D003252 ORTHO05D003640 4.5e-10 68.2 60 58.3
SpUn0424_0010 Schrenkiella parvula HOM05D003252 ORTHO05D003640 4.5e-10 68.2 60 58.3
Atru.chr7.1676 Acer truncatum HOM05D003252 ORTHO05D003640 5.8e-10 67.8 107 44.9
Aqoxy1G01046 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 1.0e-09 67.0 64 54.7
QL05p040193 Quercus lobata HOM05D003252 ORTHO05D003640 1.0e-09 67.0 66 53.0
VMungo1309G1999 Vigna mungo HOM05D003252 ORTHO05D003640 1.3e-09 66.6 65 50.8
EL10Ac9g21338 Beta vulgaris HOM05D003252 ORTHO05D003640 2.2e-09 65.9 67 50.7
Carub.0001s4024 Capsella rubella HOM05D003252 ORTHO05D003640 2.9e-09 65.5 65 53.8
AUR62010009 Chenopodium quinoa HOM05D003252 ORTHO05D003640 2.9e-09 65.5 64 51.6
AUR62013000 Chenopodium quinoa HOM05D003252 ORTHO05D003640 2.9e-09 65.5 64 51.6
Thhalv10011777m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 2.9e-09 65.5 69 49.3
AT1G51360 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 3.8e-09 65.1 62 51.6
BcaC05g27343 Brassica carinata HOM05D003252 ORTHO05D003640 3.8e-09 65.1 60 60.0
C05p32670 Brassica napus HOM05D003252 ORTHO05D003640 3.8e-09 65.1 60 60.0
BolC5t32000H Brassica oleracea HOM05D003252 ORTHO05D003640 3.8e-09 65.1 60 60.0
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 3.8e-09 65.1 68 44.1
Phvul.009G228300 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 3.8e-09 65.1 76 40.8
Glyma.13G108800 Glycine max HOM05D003252 ORTHO05D003640 4.9e-09 64.7 63 49.2
Psat1g133280 Pisum sativum HOM05D003252 ORTHO05D003640 6.5e-09 64.3 97 42.3
A05p19630 Brassica napus HOM05D003252 ORTHO05D003640 8.4e-09 63.9 60 60.0
FAN23G1081 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.4e-08 63.2 102 44.1
HPP92_023461 Vanilla planifolia HOM05D003252 ORTHO05D003640 1.4e-08 63.2 60 53.3
HPP92_023470 Vanilla planifolia HOM05D003252 ORTHO05D003640 1.4e-08 63.2 60 53.3
Medtr0121s0060 Medicago truncatula HOM05D003252 ORTHO05D003640 1.9e-08 62.8 117 35.9
Ca_06729_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 2.5e-08 62.4 69 43.5
AUR62028990 Chenopodium quinoa HOM05D003252 ORTHO05D003640 4.2e-08 61.6 43 65.1
ATR0377G002 Amborella trichopoda HOM05D003252 ORTHO05D003640 5.5e-08 61.2 61 45.9
Lalb_Chr07g0181081 Lupinus albus HOM05D003252 ORTHO05D003640 7.1e-08 60.8 63 49.2
AUR62025184 Chenopodium quinoa HOM05D003252 ORTHO05D003640 1.6e-07 59.7 40 67.5
Lj3g0007166 Lotus japonicus HOM05D003252 ORTHO05D003640 1.6e-07 59.7 69 46.4
Medtr4g125560 Medicago truncatula HOM05D003252 ORTHO05D003640 1.6e-07 59.7 64 45.3
Psat4g017360 Pisum sativum HOM05D003252 ORTHO05D003640 1.6e-07 59.7 67 44.8
CANSAT46G0006 Cannabis sativa HOM05D003252 ORTHO05D003640 2.1e-07 59.3 67 43.3
SEGI_09665 Sequoiadendron giganteum HOM05D003252 ORTHO05D003640 2.7e-07 58.9 66 50.0
Lj6g0011531 Lotus japonicus HOM05D003252 ORTHO05D003640 3.5e-07 58.5 70 42.9
Ca_21311_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 1.8e-06 56.2 67 50.7
Lj4g0019774 Lotus japonicus HOM05D003252 ORTHO05D003640 2.3e-06 55.8 64 45.3
Lsat_1_v5_gn_3_8021 Lactuca sativa HOM05D003252 ORTHO05D003640 3.9e-06 55.1 47 55.3


User provided reference genes

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