Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 2.8e-67 258.5 128 100.0
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 5.1e-29 131.3 113 69.9
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 2.8e-27 125.6 119 63.0
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 1.4e-26 123.2 118 65.3
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.4e-26 123.2 108 63.0
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.2e-25 120.2 116 62.9
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 1.5e-25 119.8 95 69.5
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 2.6e-25 119.0 94 68.1
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 2.6e-25 119.0 120 61.7
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 4.5e-25 118.2 102 64.7
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 7.7e-25 117.5 112 63.4
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 7.7e-25 117.5 110 65.5
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 7.7e-25 117.5 119 59.7
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.0e-24 117.1 129 58.1
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 3.8e-24 115.2 120 60.0
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 3.8e-24 115.2 103 62.1
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 3.8e-24 115.2 123 59.3
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 3.8e-24 115.2 129 58.9
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 5.0e-24 114.8 121 57.9
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 6.5e-24 114.4 115 58.3
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 6.5e-24 114.4 102 65.7
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 6.5e-24 114.4 102 65.7
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 8.5e-24 114.0 121 59.5
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 8.5e-24 114.0 107 58.9
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.1e-23 113.6 102 65.7
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.9e-23 112.8 115 57.4
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.9e-23 112.8 93 66.7
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.9e-23 112.8 123 58.5
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.5e-23 112.5 119 54.6
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.2e-23 112.1 110 61.8
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 3.2e-23 112.1 129 58.9
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 4.2e-23 111.7 119 54.6
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 5.5e-23 111.3 107 60.7
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.2e-22 110.2 108 59.3
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.2e-22 110.2 118 55.9
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.1e-22 109.4 110 58.2
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 2.7e-22 109.0 130 52.3
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 3.6e-22 108.6 109 61.5
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 4.7e-22 108.2 116 56.0
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 4.7e-22 108.2 121 57.0
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 6.1e-22 107.8 107 57.9
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 8.0e-22 107.5 127 55.9
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.0e-21 107.1 108 60.2
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.0e-21 107.1 93 60.2
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.0e-21 107.1 93 60.2
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.4e-21 106.7 108 57.4
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.4e-21 106.7 119 57.1
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.8e-21 106.3 103 60.2
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.8e-21 106.3 104 59.6
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.8e-21 106.3 106 59.4
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 1.8e-21 106.3 107 55.1
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 1.8e-21 106.3 88 65.9
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.3e-21 105.9 108 58.3
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.3e-21 105.9 122 53.3
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.3e-21 105.9 122 53.3
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 3.0e-21 105.5 131 52.7
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.0e-21 105.5 113 55.8
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 4.0e-21 105.1 109 53.2
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 5.2e-21 104.8 116 52.6
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 6.7e-21 104.4 110 59.1
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 6.7e-21 104.4 119 55.5
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 6.7e-21 104.4 90 63.3
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 8.8e-21 104.0 90 61.1
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 8.8e-21 104.0 109 52.3
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.1e-20 103.6 92 63.0
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.1e-20 103.6 109 52.3
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.1e-20 103.6 103 55.3
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.5e-20 103.2 108 57.4
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 2.0e-20 102.8 118 55.1
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 3.3e-20 102.1 109 58.7
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 4.4e-20 101.7 106 57.5
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 4.4e-20 101.7 103 59.2
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 5.7e-20 101.3 129 53.5
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 5.7e-20 101.3 97 58.8
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 9.7e-20 100.5 130 50.0
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.7e-19 99.8 123 55.3
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.8e-19 99.0 99 55.6
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 2.8e-19 99.0 108 54.6
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 3.7e-19 98.6 109 50.5
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 3.7e-19 98.6 127 50.4
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.4e-18 96.7 105 58.1
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.4e-18 96.7 117 50.4
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 1.8e-18 96.3 108 53.7
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.4e-18 95.9 114 50.9
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 3.1e-18 95.5 126 48.4
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 4.1e-18 95.1 80 66.2
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 4.1e-18 95.1 123 51.2
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 9.1e-18 94.0 126 47.6
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 9.1e-18 94.0 117 53.0
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 9.1e-18 94.0 118 51.7
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 1.2e-17 93.6 108 53.7
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.2e-17 93.6 115 51.3
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 2.6e-17 92.4 90 53.3
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 3.5e-17 92.0 108 50.0
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 3.5e-17 92.0 112 49.1
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 4.5e-17 91.7 109 49.5
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 4.5e-17 91.7 68 72.1
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 5.9e-17 91.3 118 50.8
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 7.7e-17 90.9 108 50.9
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.3e-16 90.1 106 52.8
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 2.2e-16 89.4 107 51.4
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 6.5e-16 87.8 108 50.9
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 1.1e-15 87.0 107 48.6
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 1.9e-15 86.3 105 47.6
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-15 86.3 105 47.6
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-15 86.3 105 47.6
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.9e-15 86.3 106 50.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 2.5e-15 85.9 105 50.5
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 4.2e-15 85.1 105 46.7
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 5.5e-15 84.7 90 56.7
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 7.2e-15 84.3 104 47.1
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 7.2e-15 84.3 107 51.4
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 2.1e-14 82.8 95 51.6
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 2.7e-14 82.4 107 44.9
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 2.7e-14 82.4 94 47.9
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 6.1e-14 81.3 115 45.2
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 1.8e-13 79.7 116 44.0
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 5.7e-12 74.7 61 68.9
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 7.5e-12 74.3 56 67.9
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 7.5e-12 74.3 116 41.4
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.8e-11 71.6 176 33.0
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 8.3e-11 70.9 102 45.1
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 8.3e-11 70.9 102 45.1
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.1e-10 70.5 53 71.7
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.1e-10 70.5 57 68.4
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 1.8e-10 69.7 117 42.7
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 4.1e-10 68.6 96 47.9
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 2.0e-09 66.2 42 73.8
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 7.7e-09 64.3 42 71.4
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.0e-08 63.9 104 48.1
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.3e-08 63.5 42 69.0
SMO347G0178 Selaginella moellendorffii HOM05D004876 ORTHO05D005488 3.2e-07 58.9 105 37.1
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 5.5e-07 58.2 71 42.3


User provided reference genes

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