Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 0.0e+00 1501.5 783 100.0
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 4.2e-190 669.1 784 50.6
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 3.3e-187 659.4 804 50.0
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 3.3e-187 659.4 804 50.0
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 2.2e-183 646.7 785 49.0
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 6.5e-183 645.2 779 49.3
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 2.3e-180 636.7 786 49.5
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 4.8e-178 629.0 787 49.2
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 1.2e-176 624.4 785 48.8
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.9e-174 617.1 773 49.2
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 4.2e-174 615.9 779 47.6
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 7.9e-173 611.7 801 48.6
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.3e-167 594.3 784 48.1
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 8.0e-165 585.1 842 47.0
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 2.2e-162 577.0 784 46.8
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 8.2e-162 575.1 783 46.6
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 4.1e-161 572.8 785 45.9
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 2.0e-160 570.5 783 45.6
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 3.5e-160 569.7 764 47.1
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 4.2e-158 562.8 789 45.8
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 4.0e-156 556.2 767 46.5
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 6.8e-156 555.4 778 46.1
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 1.5e-155 554.3 776 45.5
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.6e-155 553.5 791 45.1
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.7e-155 552.4 790 45.8
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.4e-153 547.7 792 45.2
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.4e-153 547.7 792 45.5
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 1.8e-153 547.4 786 45.7
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 9.1e-153 545.0 790 44.7
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.6e-152 544.3 795 45.4
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 1.0e-151 541.6 750 44.7
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 1.5e-150 537.7 791 44.0
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 4.2e-150 536.2 755 45.0
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.8e-149 533.5 785 45.2
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 6.1e-149 532.3 763 44.2
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.0e-148 530.0 778 44.9
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.3e-146 524.6 758 44.7
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.3e-146 524.6 771 42.4
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 2.2e-146 523.9 788 45.2
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 8.3e-146 521.9 775 43.9
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 5.4e-145 519.2 775 43.7
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 3.8e-143 513.1 743 44.5
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 7.3e-142 508.8 742 44.3
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 4.0e-140 503.1 767 43.5
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 5.2e-140 502.7 769 43.8
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 6.8e-140 502.3 772 42.4
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 2.0e-139 500.7 776 42.4
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 2.6e-139 500.4 695 45.0
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 2.2e-138 497.3 772 43.0
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 2.9e-138 496.9 786 41.3
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.7e-138 496.5 779 41.5
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 3.7e-138 496.5 772 43.0
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 6.6e-135 485.7 773 41.7
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 1.1e-134 485.0 739 43.3
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.9e-134 484.2 731 44.9
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 4.3e-134 483.0 716 43.4
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.2e-133 481.5 734 43.6
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.4e-132 478.0 773 41.4
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 2.3e-132 477.2 696 44.0
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 3.4e-131 473.4 785 40.5
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 3.7e-130 469.9 770 40.9
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 1.1e-129 468.4 744 42.1
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 5.4e-129 466.1 764 40.6
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 4.6e-128 463.0 792 38.8
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 5.0e-127 459.5 768 40.4
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 6.6e-127 459.1 782 40.8
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 4.4e-123 446.4 761 40.7
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 1.2e-120 438.3 790 39.0
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 6.8e-116 422.5 471 52.2
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 8.9e-116 422.2 772 37.7
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 8.9e-116 422.2 732 39.6
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 9.9e-115 418.7 737 39.1
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 2.9e-114 417.2 819 37.5
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 6.0e-112 409.5 727 40.2
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 6.9e-108 396.0 615 42.6
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 4.6e-104 383.3 765 37.3
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.4e-100 371.7 264 73.5
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.3e-95 355.1 645 41.7
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 7.4e-94 349.4 327 59.3
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 6.7e-87 326.2 305 56.7
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 2.1e-85 321.2 265 61.5
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.1e-84 318.9 588 40.1
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.8e-84 318.2 243 67.9
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 1.5e-83 315.1 275 61.5
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 6.3e-69 266.5 382 45.5
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 6.5e-58 229.9 254 50.0
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 3.2e-57 227.6 250 50.4
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 1.2e-46 192.6 158 64.6
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.8e-44 185.3 157 64.3
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 4.4e-30 137.5 101 66.3
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.1e-28 132.9 367 33.5
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 3.5e-27 127.9 196 43.4
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 5.0e-26 124.0 221 37.1
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 3.0e-18 98.2 83 60.2
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 3.9e-18 97.8 84 57.1
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 7.8e-11 73.6 105 43.8
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 7.8e-11 73.6 74 48.6
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 5.1e-10 70.9 232 27.2
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 2.3e-07 62.0 117 34.2


User provided reference genes

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