Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.2e-266 922.5 451 100.0
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.2e-173 613.6 321 90.0
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.7e-173 612.5 330 86.4
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 3.1e-169 599.0 332 85.8
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 6.8e-169 597.8 317 85.5
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 6.8e-169 597.8 317 85.5
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.3e-167 593.6 317 85.2
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 4.9e-167 591.7 330 84.2
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 1.1e-166 590.5 316 84.2
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.1e-166 590.5 326 83.1
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.1e-166 590.5 329 83.6
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.4e-166 590.1 321 83.5
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.9e-166 589.7 326 83.7
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 1.9e-166 589.7 316 85.1
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 9.2e-166 587.4 319 85.0
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.2e-165 587.0 365 77.8
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.6e-165 586.6 322 83.2
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.6e-165 586.6 326 83.1
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 2.1e-165 586.3 319 85.3
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 3.5e-165 585.5 326 83.1
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.5e-165 585.5 326 83.1
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 3.5e-165 585.5 320 84.1
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 4.6e-165 585.1 322 83.2
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 6.0e-165 584.7 321 82.9
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.0e-164 583.9 326 82.2
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.3e-164 583.6 322 82.9
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 3.0e-164 582.4 318 84.3
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 6.6e-164 581.3 327 84.1
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 6.6e-164 581.3 331 79.8
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 6.6e-164 581.3 324 82.7
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 6.6e-164 581.3 326 82.8
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 8.7e-164 580.9 316 84.2
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 8.7e-164 580.9 326 82.8
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 8.7e-164 580.9 322 84.2
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.5e-163 580.1 326 82.2
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 4.3e-163 578.6 323 82.4
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 4.3e-163 578.6 318 82.7
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.2e-162 577.0 318 84.6
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.6e-162 576.6 320 83.1
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.6e-162 576.6 316 83.5
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 2.1e-162 576.2 328 82.9
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 2.1e-162 576.2 320 82.2
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 2.8e-162 575.9 312 84.6
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 3.6e-162 575.5 320 82.8
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.6e-162 575.5 318 84.6
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.7e-162 575.1 318 84.6
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 4.7e-162 575.1 319 83.7
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 4.7e-162 575.1 322 82.3
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.2e-162 574.7 322 83.2
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.1e-161 573.9 319 82.8
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 1.4e-161 573.5 327 81.7
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 5.2e-161 571.6 316 82.6
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 6.9e-161 571.2 328 82.0
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 9.0e-161 570.9 310 83.9
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 9.0e-161 570.9 318 83.0
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.0e-160 569.7 327 80.4
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 3.4e-160 568.9 326 80.4
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 3.4e-160 568.9 310 83.9
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 4.4e-160 568.5 322 81.4
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.4e-160 568.5 327 80.1
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 5.8e-160 568.2 314 82.5
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 5.8e-160 568.2 317 82.6
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 5.8e-160 568.2 317 83.0
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 5.8e-160 568.2 321 81.9
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 9.9e-160 567.4 318 81.4
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 9.9e-160 567.4 320 82.5
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 9.9e-160 567.4 319 80.9
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 9.9e-160 567.4 321 81.3
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.3e-159 567.0 329 79.3
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 1.3e-159 567.0 315 83.8
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.3e-159 567.0 323 80.5
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 6.4e-159 564.7 320 81.6
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 8.4e-159 564.3 379 70.7
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 8.4e-159 564.3 322 81.7
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.1e-158 563.9 321 81.0
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.9e-158 563.1 325 80.0
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 3.2e-158 562.4 321 79.8
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 3.2e-158 562.4 319 80.6
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 5.4e-158 561.6 324 79.6
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 7.1e-158 561.2 320 79.7
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 7.1e-158 561.2 322 79.2
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 1.2e-157 560.5 330 80.0
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 1.6e-157 560.1 321 79.4
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 1.6e-157 560.1 321 79.4
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 2.1e-157 559.7 316 80.4
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 7.8e-157 557.8 314 80.6
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 7.8e-157 557.8 316 81.0
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 7.8e-157 557.8 316 81.0
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 1.3e-156 557.0 327 79.8
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 6.6e-156 554.7 300 85.7
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 8.7e-156 554.3 321 78.5
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 8.7e-156 554.3 321 78.5
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.9e-155 553.1 313 81.2
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 5.6e-155 551.6 321 78.5
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 1.6e-154 550.1 314 79.3
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.4e-153 547.0 324 78.7
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.8e-153 546.6 321 79.1
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 5.3e-153 545.0 321 79.1
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 5.3e-153 545.0 319 79.0
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 1.7e-151 540.0 322 77.3
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 4.9e-151 538.5 316 78.8
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 4.9e-151 538.5 346 74.0
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 1.4e-150 537.0 316 78.5
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 5.1e-148 528.5 321 76.3
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.5e-147 526.2 319 75.5
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 2.4e-145 519.6 299 79.6
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 5.3e-145 518.5 305 77.4
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 9.9e-144 514.2 333 72.4
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 7.1e-142 508.1 278 83.5
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 2.3e-140 503.1 311 73.6
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.1e-138 496.5 307 76.5
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 1.4e-137 493.8 315 71.4
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 1.4e-134 483.8 266 83.1
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 2.1e-133 479.9 268 81.7
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.8e-130 469.5 316 67.4
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.8e-130 469.5 316 67.4
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 4.8e-130 468.8 305 69.5
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 3.8e-127 459.1 337 66.2
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 3.2e-126 456.1 308 67.5
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 1.1e-121 441.0 251 80.1
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.6e-117 427.2 309 62.1
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 2.6e-112 409.8 232 82.8
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 4.2e-102 375.9 314 58.0
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 1.2e-99 367.9 244 70.1
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 4.0e-92 342.8 215 75.8
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 5.5e-86 322.4 321 50.2
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.3e-79 301.2 344 43.6
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 3.7e-74 283.1 360 41.7
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 5.1e-55 219.5 123 78.0
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 3.0e-31 140.6 82 82.9
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 3.1e-28 130.6 89 73.0
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.2e-21 105.9 84 65.5
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 2.5e-17 94.4 67 68.7
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.1e-14 85.5 48 75.0
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.1e-14 85.5 47 78.7
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 4.3e-14 83.6 53 75.5
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 5.7e-14 83.2 41 87.8
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.6e-08 65.1 42 64.3


User provided reference genes

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