Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 8.2e-85 317.0 159 100.0
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 6.1e-64 247.7 158 72.8
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 5.2e-63 244.6 157 72.6
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 5.2e-63 244.6 156 74.4
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 2.6e-62 242.3 156 73.7
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 7.5e-62 240.7 157 70.7
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 9.8e-62 240.4 151 74.2
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 6.3e-61 237.7 157 70.1
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 1.1e-60 236.9 157 69.4
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 1.4e-60 236.5 153 73.2
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 4.1e-60 235.0 157 70.7
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 4.1e-60 235.0 150 74.0
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 5.4e-60 234.6 148 74.3
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 7.0e-60 234.2 150 69.3
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 7.0e-60 234.2 155 71.6
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 1.2e-59 233.4 159 68.6
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 1.6e-59 233.0 156 71.2
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 1.6e-59 233.0 158 69.0
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 3.5e-59 231.9 152 71.1
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 3.5e-59 231.9 156 69.9
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 3.5e-59 231.9 154 70.1
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 3.5e-59 231.9 157 68.8
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 3.5e-59 231.9 153 70.6
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 5.9e-59 231.1 150 72.7
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 5.9e-59 231.1 155 68.4
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 7.7e-59 230.7 157 73.2
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 7.7e-59 230.7 157 73.9
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 1.0e-58 230.3 162 68.5
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 1.0e-58 230.3 157 66.9
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.0e-58 230.3 153 71.9
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 1.3e-58 229.9 152 69.7
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 1.7e-58 229.6 151 71.5
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 2.3e-58 229.2 150 72.7
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 2.3e-58 229.2 148 73.6
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 2.3e-58 229.2 153 69.3
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 2.3e-58 229.2 153 69.3
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 2.9e-58 228.8 153 70.6
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 3.8e-58 228.4 157 66.9
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 6.6e-58 227.6 152 71.1
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 8.6e-58 227.3 160 68.1
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 8.6e-58 227.3 160 68.1
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 1.1e-57 226.9 153 68.0
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 1.1e-57 226.9 157 73.2
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 1.9e-57 226.1 157 71.3
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.5e-57 225.7 158 68.4
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 2.5e-57 225.7 157 72.0
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 2.5e-57 225.7 153 70.6
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 3.3e-57 225.3 149 71.8
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 3.3e-57 225.3 158 67.7
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 4.2e-57 224.9 159 66.7
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 4.2e-57 224.9 161 68.3
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 5.5e-57 224.6 156 64.7
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 7.2e-57 224.2 157 64.3
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 9.5e-57 223.8 157 70.7
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.2e-56 223.4 159 66.0
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 1.2e-56 223.4 156 67.3
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 1.2e-56 223.4 154 70.1
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 1.6e-56 223.0 158 68.4
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 1.6e-56 223.0 157 72.0
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 1.6e-56 223.0 154 70.1
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 1.6e-56 223.0 153 69.3
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 2.1e-56 222.6 148 71.6
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 2.1e-56 222.6 153 69.9
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.8e-56 222.2 160 66.9
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 2.8e-56 222.2 151 67.5
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 3.6e-56 221.9 152 69.7
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 4.7e-56 221.5 153 66.0
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 6.1e-56 221.1 153 68.0
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 6.1e-56 221.1 157 66.9
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 8.0e-56 220.7 157 63.1
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 1.4e-55 219.9 150 68.7
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 1.8e-55 219.5 153 68.6
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 3.0e-55 218.8 151 66.2
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 4.0e-55 218.4 152 69.1
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 6.8e-55 217.6 155 64.5
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 1.2e-54 216.9 152 68.4
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 1.2e-54 216.9 152 68.4
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 1.2e-54 216.9 149 70.5
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 1.5e-54 216.5 149 69.8
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 5.7e-54 214.5 173 61.3
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 7.5e-54 214.2 148 68.2
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 9.8e-54 213.8 149 67.8
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 1.7e-53 213.0 163 63.2
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 3.7e-53 211.8 152 68.4
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 6.3e-53 211.1 157 66.9
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 2.7e-51 205.7 139 65.5
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 1.3e-50 203.4 159 64.8
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 2.3e-50 202.6 139 67.6
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 8.6e-50 200.7 153 61.4
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 8.6e-50 200.7 150 60.7
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 1.5e-49 199.9 181 58.6
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.9e-49 199.5 157 62.4
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 4.0e-47 191.8 160 60.0
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.2e-46 190.3 136 65.4
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 2.6e-46 189.1 156 61.5
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 3.7e-45 185.3 156 60.3
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.9e-41 172.9 153 53.6
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 8.3e-37 157.5 169 48.5
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 9.2e-36 154.1 161 52.2
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 2.7e-35 152.5 99 69.7
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 3.5e-35 152.1 101 71.3
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 1.7e-34 149.8 100 71.0
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 5.6e-33 144.8 90 73.3
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 9.5e-33 144.1 146 53.4
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 1.1e-31 140.6 93 72.0
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 7.8e-27 124.4 78 70.5
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 2.5e-25 119.4 79 70.9
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 2.5e-25 119.4 79 70.9
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 5.6e-25 118.2 82 63.4
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 1.5e-22 110.2 79 69.6
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 2.4e-20 102.8 77 62.3
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 4.2e-20 102.1 81 61.7
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 3.0e-18 95.9 65 67.7
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 1.5e-14 83.6 68 57.4
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 2.6e-14 82.8 97 43.3
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.7e-11 72.8 54 53.7
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 8.7e-10 67.8 78 50.0


User provided reference genes

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