Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.6e-107 393.7 368 100.0
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 6.3e-80 302.0 172 89.5
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 1.2e-78 297.7 172 88.4
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 2.0e-78 297.0 174 87.4
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 2.0e-78 297.0 174 87.4
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 4.5e-78 295.8 174 87.9
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 1.7e-77 293.9 172 88.4
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 1.1e-76 291.2 172 85.5
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.5e-76 290.8 174 84.5
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 1.9e-76 290.4 174 86.8
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 3.3e-76 289.7 172 84.9
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 4.2e-76 289.3 174 84.5
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 4.2e-76 289.3 174 84.5
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 5.5e-76 288.9 174 85.1
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 5.5e-76 288.9 174 85.1
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 5.5e-76 288.9 174 86.2
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 5.5e-76 288.9 172 86.0
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 9.5e-76 288.1 173 86.1
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.2e-75 287.7 171 87.7
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.2e-75 287.7 174 84.5
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 1.6e-75 287.3 174 85.1
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 2.1e-75 287.0 174 85.1
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 2.1e-75 287.0 174 83.9
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.6e-75 286.2 174 85.1
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.6e-75 286.2 174 85.1
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.6e-75 286.2 174 83.9
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 4.7e-75 285.8 168 86.3
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 6.1e-75 285.4 174 83.9
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 8.0e-75 285.0 174 85.6
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 8.0e-75 285.0 173 84.4
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.0e-74 284.6 174 84.5
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.4e-74 284.3 174 84.5
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.8e-74 283.9 170 85.3
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 2.3e-74 283.5 172 86.0
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 3.0e-74 283.1 172 84.3
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 4.0e-74 282.7 175 82.9
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 4.0e-74 282.7 172 85.5
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 5.2e-74 282.3 172 85.5
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 1.2e-73 281.2 168 85.1
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.2e-73 281.2 168 85.1
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 2.0e-73 280.4 172 83.7
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 2.6e-73 280.0 174 84.5
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 3.4e-73 279.6 172 84.3
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.7e-73 278.9 168 84.5
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 5.7e-73 278.9 175 81.7
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 5.7e-73 278.9 178 80.3
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 9.8e-73 278.1 177 80.8
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 2.2e-72 276.9 175 81.1
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 4.9e-72 275.8 172 82.0
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 8.3e-72 275.0 174 81.0
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 8.3e-72 275.0 172 83.1
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 9.2e-71 271.6 172 83.7
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 2.7e-70 270.0 174 80.5
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 7.8e-70 268.5 174 78.2
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 8.6e-69 265.0 170 81.2
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.1e-68 264.6 169 79.9
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 4.3e-68 262.7 172 79.1
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 7.3e-68 261.9 167 80.8
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.2e-67 261.2 170 78.8
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.2e-67 261.2 170 78.8
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 4.7e-67 259.2 172 78.5
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 2.3e-66 256.9 171 78.4
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 6.8e-66 255.4 205 68.8
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 8.9e-66 255.0 221 65.6
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 2.0e-65 253.8 174 74.1
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 3.4e-65 253.1 174 74.7
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 4.4e-65 252.7 172 77.3
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.2e-64 250.4 174 73.6
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.9e-64 250.0 174 73.6
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.9e-64 250.0 174 73.6
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.9e-64 250.0 174 73.6
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.9e-64 250.0 174 73.6
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.9e-64 250.0 174 73.6
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 1.9e-63 247.3 166 74.1
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 7.0e-63 245.4 174 73.6
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.6e-62 244.2 173 74.0
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 3.5e-62 243.0 198 67.2
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 3.5e-62 243.0 159 78.6
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 4.6e-62 242.7 174 73.0
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 4.6e-62 242.7 174 73.0
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 4.6e-62 242.7 166 73.5
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 6.0e-62 242.3 174 73.0
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.3e-61 241.1 149 86.6
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 5.0e-61 239.2 168 74.4
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.1e-60 238.0 150 84.0
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 1.5e-60 237.7 202 63.4
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 4.7e-59 232.6 171 72.5
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 6.2e-59 232.3 150 81.3
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 3.1e-58 229.9 203 65.0
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 4.0e-58 229.6 168 69.6
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 4.0e-58 229.6 156 76.3
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 1.7e-56 224.2 193 65.8
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 3.7e-56 223.0 152 78.3
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 7.0e-55 218.8 168 67.9
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 7.0e-55 218.8 174 66.1
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 4.7e-51 206.1 149 71.1
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 4.0e-50 203.0 131 77.9
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.3e-44 183.3 118 82.2
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 4.4e-33 146.4 72 93.1
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.4e-31 140.6 108 70.4
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.4e-31 140.6 108 70.4
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 3.2e-31 140.2 93 87.1
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 3.3e-28 130.2 72 81.9
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 1.3e-27 128.3 124 62.1
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.1e-27 127.5 65 90.8
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 6.2e-27 125.9 95 71.6
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 5.8e-25 119.4 163 42.9
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 4.2e-23 113.2 66 74.2
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 4.2e-23 113.2 176 38.1
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.1e-19 100.9 80 76.2
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.4e-18 98.2 80 73.8
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 1.8e-18 97.8 69 82.6
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 3.1e-18 97.1 92 65.2
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.6e-14 84.7 77 62.3
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.9e-12 77.8 64 67.2
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 1.3e-11 75.1 51 84.3
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 2.4e-10 70.9 40 90.0
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 9.0e-10 68.9 64 65.6
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 3.4e-09 67.0 48 66.7
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 8.4e-08 62.4 37 86.5
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 3.2e-07 60.5 32 87.5


User provided reference genes

Program Settings