Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 2.8e-45 185.3 120 100.0
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 2.7e-24 115.5 117 76.1
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 4.1e-20 101.7 92 85.9
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 7.0e-20 100.9 100 78.0
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 2.7e-19 99.0 120 69.2
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 5.9e-19 97.8 122 65.6
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 5.9e-19 97.8 120 69.2
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 2.2e-18 95.9 117 67.5
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 5.0e-18 94.7 111 72.1
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 5.0e-18 94.7 122 68.9
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 6.5e-18 94.4 99 75.8
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 1.1e-17 93.6 95 76.8
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 1.9e-17 92.8 118 68.6
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 1.9e-17 92.8 106 71.7
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 3.2e-17 92.0 93 76.3
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 3.2e-17 92.0 93 76.3
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 5.5e-17 91.3 111 72.1
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 9.4e-17 90.5 98 75.5
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 1.6e-16 89.7 99 71.7
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 2.7e-16 89.0 94 71.3
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 2.7e-16 89.0 104 72.1
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 4.7e-16 88.2 93 76.3
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 4.7e-16 88.2 110 66.4
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 8.0e-16 87.4 99 75.8
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 8.0e-16 87.4 113 64.6
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 1.0e-15 87.0 110 66.4
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 1.4e-15 86.7 114 66.7
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 1.8e-15 86.3 98 75.5
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 2.3e-15 85.9 95 74.7
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 2.3e-15 85.9 116 67.2
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 2.3e-15 85.9 87 78.2
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 2.3e-15 85.9 93 76.3
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 3.0e-15 85.5 117 65.0
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 3.0e-15 85.5 97 76.3
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 3.0e-15 85.5 98 74.5
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 6.8e-15 84.3 94 72.3
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 8.8e-15 84.0 88 79.5
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 1.2e-14 83.6 115 64.3
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.2e-14 83.6 113 63.7
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 1.2e-14 83.6 111 65.8
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 1.5e-14 83.2 113 63.7
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.5e-14 83.2 113 63.7
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 2.0e-14 82.8 100 69.0
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 3.4e-14 82.0 100 69.0
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 4.4e-14 81.6 95 74.7
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 5.7e-14 81.3 87 74.7
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 5.7e-14 81.3 96 69.8
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 1.3e-13 80.1 92 76.1
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 1.3e-13 80.1 99 65.7
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 1.7e-13 79.7 111 64.0
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 1.7e-13 79.7 122 59.8
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 1.7e-13 79.7 87 77.0
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 2.2e-13 79.3 94 70.2
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 2.8e-13 79.0 87 77.0
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 3.7e-13 78.6 94 70.2
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 4.8e-13 78.2 86 80.2
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 4.8e-13 78.2 86 80.2
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 6.3e-13 77.8 92 75.0
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 8.3e-13 77.4 87 71.3
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 1.4e-12 76.6 102 67.6
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 1.4e-12 76.6 87 75.9
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.8e-12 76.3 101 67.3
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 2.4e-12 75.9 92 73.9
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 2.4e-12 75.9 99 69.7
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.1e-12 75.5 92 72.8
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 3.1e-12 75.5 86 79.1
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 3.1e-12 75.5 98 65.3
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 4.1e-12 75.1 126 59.5
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 5.4e-12 74.7 126 57.9
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 1.2e-11 73.6 70 54.3
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 1.2e-11 73.6 106 66.0
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 2.7e-11 72.4 86 74.4
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 7.7e-11 70.9 87 72.4
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 1.0e-10 70.5 86 75.6
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 1.0e-10 70.5 86 75.6
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 1.0e-10 70.5 92 73.9
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 1.3e-10 70.1 107 59.8
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 1.3e-10 70.1 86 67.4
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 1.7e-10 69.7 93 69.9
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 3.3e-09 65.5 101 66.3
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 2.8e-08 62.4 52 57.7
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 6.1e-08 61.2 50 56.0
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 1.4e-07 60.1 39 66.7
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 1.4e-07 60.1 94 37.2
Lj1A1206T64 Lonicera japonica HOM05D021202 ORTHO05D009769 5.2e-07 58.2 94 35.1
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 5.2e-07 58.2 65 49.2
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 1.2e-06 57.0 72 44.4
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 3.4e-06 55.5 40 60.0


User provided reference genes

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