Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 3.0e-84 315.1 152 100.0
Haze_13167 Corylus avellana HOM05D008409 ORTHO05D010483 1.5e-67 259.6 149 79.9
TAR627G0101 Trochodendron aralioides HOM05D008409 ORTHO05D010483 2.5e-67 258.8 149 82.6
Actinidia11031 Actinidia chinensis HOM05D008409 ORTHO05D010483 4.8e-66 254.6 149 76.5
QL08p038864 Quercus lobata HOM05D008409 ORTHO05D010483 1.5e-64 249.6 149 75.8
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 3.4e-64 248.4 149 75.8
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 5.9e-64 247.7 149 73.2
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 5.9e-64 247.7 149 75.8
CiPaw.04G126300 Carya illinoinensis HOM05D008409 ORTHO05D010483 1.0e-63 246.9 149 75.2
GSVIVG01020550001 Vitis vinifera HOM05D008409 ORTHO05D010483 1.0e-63 246.9 148 77.0
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 6.5e-63 244.2 149 71.1
MELO3C018733.2 Cucumis melo HOM05D008409 ORTHO05D010483 1.4e-62 243.0 149 70.5
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 1.4e-62 243.0 148 74.3
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 4.2e-62 241.5 149 69.8
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 4.2e-62 241.5 148 72.3
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 4.2e-62 241.5 148 74.3
Manes.12G089218 Manihot esculenta HOM05D008409 ORTHO05D010483 2.1e-61 239.2 147 73.5
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 2.7e-61 238.8 150 72.7
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 1.3e-60 236.5 149 72.5
Aqoxy1G02429 Aquilegia oxysepala HOM05D008409 ORTHO05D010483 5.1e-60 234.6 148 72.3
Ciclev10017070m.g Citrus clementina HOM05D008409 ORTHO05D010483 8.7e-60 233.8 149 71.8
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 1.1e-59 233.4 150 71.3
TWI36G0630 Tripterygium wilfordii HOM05D008409 ORTHO05D010483 9.7e-59 230.3 149 67.8
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 2.4e-57 225.7 147 69.4
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 9.0e-57 223.8 150 67.3
COL.COLO4_30195 Corchorus olitorius HOM05D008409 ORTHO05D010483 1.5e-56 223.0 136 73.5
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 1.0e-55 220.3 147 68.0
MD09G1247200 Malus domestica HOM05D008409 ORTHO05D010483 1.3e-55 219.9 149 69.1
Peaxi162Scf00059g01918 Petunia axillaris HOM05D008409 ORTHO05D010483 5.0e-55 218.0 147 64.6
MBI06_g04179_MAGBIO Magnolia biondii HOM05D008409 ORTHO05D010483 1.1e-54 216.9 147 70.1
CAN.G578.4 Capsicum annuum HOM05D008409 ORTHO05D010483 2.5e-54 215.7 144 66.7
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 4.2e-54 214.9 145 64.8
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 6.7e-52 207.6 148 62.8
CSS0031688 Camellia sinensis var. sinensis HOM05D008409 ORTHO05D010483 3.3e-51 205.3 142 71.1
Sopen10g004190 Solanum pennellii HOM05D008409 ORTHO05D010483 3.7e-50 201.8 146 63.7
Solyc10g008330.4 Solanum lycopersicum HOM05D008409 ORTHO05D010483 4.8e-50 201.4 146 63.7
Nitab4.5_0009473g0020 Nicotiana tabacum HOM05D008409 ORTHO05D010483 3.2e-46 188.7 148 61.5
vmacro12306 Vaccinium macrocarpon HOM05D008409 ORTHO05D010483 4.8e-42 174.9 116 68.1
SEGI_00232 Sequoiadendron giganteum HOM05D008409 ORTHO05D010483 4.1e-41 171.8 153 53.6
Dinv23634 Davidia involucrata HOM05D008409 ORTHO05D010483 1.3e-39 166.8 101 74.3
QL08p038938 Quercus lobata HOM05D008409 ORTHO05D010483 2.8e-34 149.1 92 70.7
Eucgr.B02546 Eucalyptus grandis HOM05D000197 ORTHO05D000114 2.7e-16 89.4 150 36.0
SEGI_04347 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 2.7e-16 89.4 145 31.7
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 7.8e-16 87.8 139 34.5
PGR119G0191 Punica granatum HOM05D000197 ORTHO05D000114 2.9e-15 85.9 148 34.5
Lsat_1_v5_gn_5_100541 Lactuca sativa HOM05D000197 ORTHO05D000114 2.5e-14 82.8 146 32.9
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 4.3e-14 82.0 144 34.7
TAR374G0922 Trochodendron aralioides HOM05D000197 ORTHO05D000114 4.3e-14 82.0 146 34.9
Lsat_1_v5_gn_5_100601 Lactuca sativa HOM05D000197 ORTHO05D000114 7.3e-14 81.3 146 31.5
TAR622G0730 Trochodendron aralioides HOM05D000197 ORTHO05D000114 9.5e-14 80.9 152 32.9
Pp3c8_12660 Physcomitrium patens HOM05D008409 ORTHO05D010483 1.6e-13 80.1 127 33.9
HPP92_015289 Vanilla planifolia HOM05D000197 ORTHO05D000114 1.6e-13 80.1 146 32.9
ECA246G2358 Erigeron canadensis HOM05D000197 ORTHO05D000114 2.1e-13 79.7 146 31.5
Sc04g0008950 Simmondsia chinensis HOM05D000197 ORTHO05D000114 2.1e-13 79.7 147 33.3
SGA_v2.0_scaffold8G04238 Striga asiatica HOM05D000197 ORTHO05D000114 2.1e-13 79.7 144 32.6
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 2.8e-13 79.3 146 32.2
SMO141G0292 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 2.8e-13 79.3 152 30.9
HPP92_010019 Vanilla planifolia HOM05D000197 ORTHO05D000114 3.6e-13 79.0 146 32.2
HanXRQChr11g0351041 Helianthus annuus HOM05D000197 ORTHO05D000114 6.1e-13 78.2 148 33.1
AL1G37780 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 8.0e-13 77.8 146 33.6
Pp3c2_27350 Physcomitrium patens HOM05D012277 ORTHO05D010483 8.0e-13 77.8 141 32.6
Solyc05g005865.1 Solanum lycopersicum HOM05D000197 ORTHO05D000114 1.0e-12 77.4 146 34.2
AT1G24020 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 1.8e-12 76.6 146 32.9
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 1.8e-12 76.6 146 34.2
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 1.8e-12 76.6 146 34.2
C07p20100 Brassica napus HOM05D000197 ORTHO05D000114 1.8e-12 76.6 146 34.2
BolC7t42531H Brassica oleracea HOM05D000197 ORTHO05D000114 1.8e-12 76.6 146 34.2
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 1.8e-12 76.6 146 34.2
PGSC0003DMG400004131 Solanum tuberosum HOM05D000197 ORTHO05D000114 1.8e-12 76.6 146 34.2
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 2.3e-12 76.3 146 34.9
Pp3c1_10460 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.0e-12 75.9 141 31.9
Actinidia15014 Actinidia chinensis HOM05D000197 ORTHO05D000114 4.0e-12 75.5 144 34.7
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 4.0e-12 75.5 146 33.6
CiPaw.05G148600 Carya illinoinensis HOM05D000197 ORTHO05D000114 4.0e-12 75.5 146 33.6
Aa31LG7G7810 Aethionema arabicum HOM05D000197 ORTHO05D000114 5.2e-12 75.1 146 32.9
Cfa009126 Carpinus fangiana HOM05D000197 ORTHO05D000114 5.2e-12 75.1 146 34.9
Atru.chr11.1977 Acer truncatum HOM05D000197 ORTHO05D000114 6.8e-12 74.7 146 31.5
HanXRQChr17g0563811 Helianthus annuus HOM05D000197 ORTHO05D000114 6.8e-12 74.7 146 30.8
Haze_12156 Corylus avellana HOM05D000197 ORTHO05D000114 8.9e-12 74.3 150 33.3
Lsat_1_v5_gn_3_48941 Lactuca sativa HOM05D000197 ORTHO05D000114 8.9e-12 74.3 146 32.2
GSVIVG01020183001 Vitis vinifera HOM05D000197 ORTHO05D000114 8.9e-12 74.3 135 34.8
Hund05969 Selenicereus undatus HOM05D000197 ORTHO05D000114 1.5e-11 73.6 146 32.9
Sopen05g001890 Solanum pennellii HOM05D000197 ORTHO05D000114 1.5e-11 73.6 146 32.9
Ciclev10032973m.g Citrus clementina HOM05D000197 ORTHO05D000114 2.0e-11 73.2 146 33.6
Mapoly0100s0057 Marchantia polymorpha HOM05D008409 ORTHO05D010483 2.0e-11 73.2 147 32.0
CAN.G205.30 Capsicum annuum HOM05D000197 ORTHO05D000114 2.6e-11 72.8 144 34.7
Glyma.01G034000 Glycine max HOM05D000197 ORTHO05D000114 2.6e-11 72.8 135 35.6
vmacro16272 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 2.6e-11 72.8 144 34.0
TAR622G0624 Trochodendron aralioides HOM05D000197 ORTHO05D000114 3.4e-11 72.4 146 31.5
AagrBONN_evm.TU.Sc2ySwM_228.4478 Anthoceros agrestis HOM05D008409 ORTHO05D010483 4.4e-11 72.0 131 30.5
Nn4g22865 Nelumbo nucifera HOM05D000197 ORTHO05D000114 4.4e-11 72.0 152 27.0
vmacro16271 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 4.4e-11 72.0 150 32.0
Aqoxy3G00935 Aquilegia oxysepala HOM05D000197 ORTHO05D000114 5.7e-11 71.6 148 29.1
MELO3C012016.2 Cucumis melo HOM05D000197 ORTHO05D000114 5.7e-11 71.6 144 33.3
Carub.0001s2344 Capsella rubella HOM05D000197 ORTHO05D000114 7.5e-11 71.2 146 31.5
Ca_22763_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 7.5e-11 71.2 146 30.1
Eucgr.G02178 Eucalyptus grandis HOM05D000197 ORTHO05D000114 7.5e-11 71.2 138 29.7
Glyma.02G032300 Glycine max HOM05D000197 ORTHO05D000114 7.5e-11 71.2 135 34.8
CANSAT01G1004 Cannabis sativa HOM05D000197 ORTHO05D000114 9.8e-11 70.9 152 30.9
Dinv31005 Davidia involucrata HOM05D000197 ORTHO05D000114 9.8e-11 70.9 144 32.6
Dinv31097 Davidia involucrata HOM05D000197 ORTHO05D000114 9.8e-11 70.9 144 32.6
SMO347G0071 Selaginella moellendorffii HOM05D008409 ORTHO05D010483 9.8e-11 70.9 135 31.1
CsaV3_5G031770 Cucumis sativus L. HOM05D000197 ORTHO05D000114 1.3e-10 70.5 137 33.6
Rhsim12G0123000 Rhododendron simsii HOM05D000197 ORTHO05D000114 1.3e-10 70.5 144 32.6
Prupe.1G258100 Prunus persica HOM05D000197 ORTHO05D000114 1.7e-10 70.1 149 30.9
Ah.03g132470 Amaranthus hybridus HOM05D000197 ORTHO05D000114 2.9e-10 69.3 157 29.3
CSS0039522 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 3.7e-10 68.9 144 33.3
CARHR024320 Cardamine hirsuta HOM05D000197 ORTHO05D000114 3.7e-10 68.9 144 29.9
Lj2g0009876 Lotus japonicus HOM05D000197 ORTHO05D000114 3.7e-10 68.9 146 32.9
Manes.05G090000 Manihot esculenta HOM05D000197 ORTHO05D000114 3.7e-10 68.9 146 29.5
Lj6C802G2 Lonicera japonica HOM05D000197 ORTHO05D000114 4.9e-10 68.6 142 31.7
PGR119G0429 Punica granatum HOM05D000197 ORTHO05D000114 4.9e-10 68.6 137 27.7
AUR62009319 Chenopodium quinoa HOM05D000197 ORTHO05D000114 6.4e-10 68.2 146 27.4
Cc11_g14370 Coffea canephora HOM05D000197 ORTHO05D000114 6.4e-10 68.2 146 32.9
Migut.E00440 Erythranthe guttata HOM05D000197 ORTHO05D000114 6.4e-10 68.2 135 31.1
ClCG05G025130 Citrullus lanatus HOM05D000197 ORTHO05D000114 8.3e-10 67.8 132 34.1
PSO478G3712 Papaver somniferum HOM05D000197 ORTHO05D000114 8.3e-10 67.8 151 30.5
Potri.010G096000 Populus trichocarpa HOM05D000197 ORTHO05D000114 1.1e-09 67.4 132 33.3
PSO478G4376 Papaver somniferum HOM05D000197 ORTHO05D000114 1.4e-09 67.0 152 29.6
EL10Ac6g13631 Beta vulgaris HOM05D000197 ORTHO05D000114 2.4e-09 66.2 132 30.3
Pp3c11_13210 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.2e-09 65.9 129 29.5
Pp3c7_19830 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.2e-09 65.9 142 28.9
Pp3c7_19850 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.2e-09 65.9 142 28.9
arahy.Tifrunner.gnm1.ann1.M7WURA Arachis hypogaea HOM05D000197 ORTHO05D000114 4.1e-09 65.5 143 32.9
TPR.G25548 Trifolium pratense HOM05D000197 ORTHO05D000114 4.1e-09 65.5 146 30.1
MD16G1024000 Malus domestica HOM05D000197 ORTHO05D000114 7.0e-09 64.7 136 29.4
Sabra10G0068600 Salix brachista HOM05D000197 ORTHO05D000114 9.2e-09 64.3 132 31.1
Lj3A1050T27 Lonicera japonica HOM05D000197 ORTHO05D000114 1.2e-08 63.9 148 35.1
RcHm_v2.0_Chr4g0392581 Rosa chinensis HOM05D000197 ORTHO05D000114 1.2e-08 63.9 142 28.9
SMO141G0029 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 1.2e-08 63.9 143 28.0
Psat4g125760 Pisum sativum HOM05D000197 ORTHO05D000114 1.6e-08 63.5 140 31.4
TWI36G1572 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 1.6e-08 63.5 134 32.8
PSO407G0401 Papaver somniferum HOM05D000197 ORTHO05D000114 2.7e-08 62.8 106 28.3
TWI75G0119 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 2.7e-08 62.8 127 30.7
arahy.Tifrunner.gnm1.ann1.HV6VTP Arachis hypogaea HOM05D000197 ORTHO05D000114 3.5e-08 62.4 143 32.2
AUR62013976 Chenopodium quinoa HOM05D000197 ORTHO05D000114 3.5e-08 62.4 120 30.8
arahy.Tifrunner.gnm1.ann1.SKIU1M Arachis hypogaea HOM05D000197 ORTHO05D000114 4.6e-08 62.0 149 28.9
GSVIVG01011733001 Vitis vinifera HOM05D000197 ORTHO05D000114 5.9e-08 61.6 137 28.5
COL.COLO4_08129 Corchorus olitorius HOM05D001593 ORTHO05D002007 7.8e-08 61.2 120 30.0
AUR62005328 Chenopodium quinoa HOM05D000197 ORTHO05D000114 1.0e-07 60.8 120 30.0
Aqoxy3G00934 Aquilegia oxysepala HOM05D000197 ORTHO05D000114 1.3e-07 60.5 140 28.6
A07p13480 Brassica napus HOM05D000197 ORTHO05D000114 1.7e-07 60.1 108 34.3
ECA246G1203 Erigeron canadensis HOM05D000226 ORTHO05D000114 2.3e-07 59.7 121 31.4
RcHm_v2.0_Chr4g0392511 Rosa chinensis HOM05D000197 ORTHO05D000114 2.3e-07 59.7 142 28.9
Dinv14414 Davidia involucrata HOM05D000197 ORTHO05D000114 3.0e-07 59.3 137 27.0
Lsat_1_v5_gn_5_100681 Lactuca sativa HOM05D000197 ORTHO05D000114 3.0e-07 59.3 126 30.2
Peaxi162Scf00815g00017 Petunia axillaris HOM05D000197 ORTHO05D000114 3.9e-07 58.9 141 29.8
Pp3c10_2750 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.9e-07 58.9 123 30.9
Pp3c10_2760 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.9e-07 58.9 123 30.9
Cc11_g08390 Coffea canephora HOM05D000197 ORTHO05D000114 5.0e-07 58.5 137 25.5
ECA246G2813 Erigeron canadensis HOM05D001593 ORTHO05D010032 5.0e-07 58.5 125 31.2
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 5.0e-07 58.5 91 37.4
Pp3c17_11500 Physcomitrium patens HOM05D012277 ORTHO05D010483 5.0e-07 58.5 140 30.0
SMO337G0049 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 5.0e-07 58.5 149 25.5
GSVIVG01011726001 Vitis vinifera HOM05D000197 ORTHO05D000114 5.0e-07 58.5 146 28.1
MSTRG.2157 Avicennia marina HOM05D000197 ORTHO05D000114 1.1e-06 57.4 152 25.0
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 1.1e-06 57.4 152 27.6
Pp3c13_23010 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.5e-06 57.0 125 33.6
Pp3c13_23030 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.5e-06 57.0 125 33.6
Potri.001G405600 Populus trichocarpa HOM05D001593 ORTHO05D010032 1.5e-06 57.0 150 23.3
Aqoxy1G02445 Aquilegia oxysepala HOM05D001593 ORTHO05D002007 1.9e-06 56.6 122 25.4
Carub.0001s2264 Capsella rubella HOM05D000197 ORTHO05D000114 1.9e-06 56.6 132 22.7
CiPaw.05G192300 Carya illinoinensis HOM05D000197 ORTHO05D000114 1.9e-06 56.6 119 29.4
Peaxi162Scf00815g00012 Petunia axillaris HOM05D000197 ORTHO05D000114 1.9e-06 56.6 151 27.2
arahy.Tifrunner.gnm1.ann1.MDNW8J Arachis hypogaea HOM05D000197 ORTHO05D000114 2.5e-06 56.2 150 29.3
Lj3A1049T59 Lonicera japonica HOM05D000197 ORTHO05D000114 2.5e-06 56.2 146 32.2
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 2.5e-06 56.2 150 23.3
Dinv18606 Davidia involucrata HOM05D000197 ORTHO05D000114 3.3e-06 55.8 125 32.8
Dinv26222 Davidia involucrata HOM05D000197 ORTHO05D000114 3.3e-06 55.8 125 32.8
QL03p036910 Quercus lobata HOM05D000197 ORTHO05D000114 4.3e-06 55.5 150 28.0
Sabra16G0267000 Salix brachista HOM05D001593 ORTHO05D010032 4.3e-06 55.5 111 27.9
Sabra16G0268900 Salix brachista HOM05D001593 ORTHO05D010032 4.3e-06 55.5 111 27.9
FvH4_3g20820 Fragaria vesca HOM05D001593 ORTHO05D010032 5.6e-06 55.1 153 23.5
Mapoly0063s0020 Marchantia polymorpha HOM05D001593 ORTHO05D010032 5.6e-06 55.1 91 36.3
CiPaw.05G192800 Carya illinoinensis HOM05D000197 ORTHO05D000114 7.3e-06 54.7 119 28.6
CiPaw.05G195100 Carya illinoinensis HOM05D000197 ORTHO05D000114 7.3e-06 54.7 119 27.7
PSO384G3017 Papaver somniferum HOM05D000197 ORTHO05D000114 7.3e-06 54.7 146 26.0
DCAR_009980 Daucus carota HOM05D001593 ORTHO05D010032 9.5e-06 54.3 152 24.3
Hund01084 Selenicereus undatus HOM05D008409 ORTHO05D010483 9.5e-06 54.3 41 56.1
GSVIVG01011730001 Vitis vinifera HOM05D000197 ORTHO05D000114 9.5e-06 54.3 98 33.7


User provided reference genes

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