Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 3.1e-72 275.0 136 100.0
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 6.2e-65 250.8 138 92.0
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 6.0e-28 127.9 129 56.6
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 3.7e-25 118.6 123 57.7
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 2.4e-24 115.9 121 55.4
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 3.1e-24 115.5 126 54.0
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 2.6e-23 112.5 137 49.6
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 4.5e-23 111.7 128 55.5
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 7.6e-23 110.9 130 50.8
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 7.6e-23 110.9 130 50.8
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.7e-22 109.8 124 54.0
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 2.2e-22 109.4 124 52.4
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 2.2e-22 109.4 133 52.6
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 2.9e-22 109.0 126 51.6
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 5.0e-22 108.2 133 51.1
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 6.5e-22 107.8 129 52.7
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 8.5e-22 107.5 122 50.0
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.1e-21 107.1 138 50.7
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 1.1e-21 107.1 125 51.2
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 3.2e-21 105.5 119 53.8
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 5.5e-21 104.8 130 49.2
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 5.5e-21 104.8 138 48.6
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 5.5e-21 104.8 138 48.6
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 5.5e-21 104.8 134 45.5
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 7.2e-21 104.4 138 52.2
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 7.2e-21 104.4 80 70.0
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 9.4e-21 104.0 119 50.4
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 3.6e-20 102.1 138 50.0
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.6e-20 102.1 138 50.0
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 7.9e-20 100.9 140 47.1
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 3.0e-19 99.0 116 53.4
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 5.1e-19 98.2 130 47.7
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 6.7e-19 97.8 80 67.5
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.9e-18 96.3 79 67.1
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 3.3e-18 95.5 77 70.1
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 3.3e-18 95.5 122 50.8
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 5.7e-18 94.7 124 50.8
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 2.2e-17 92.8 103 55.3
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 3.7e-17 92.0 125 45.6
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.7e-17 92.0 122 49.2
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 6.3e-17 91.3 108 50.0
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 6.3e-17 91.3 85 60.0
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 8.2e-17 90.9 76 65.8
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.1e-16 90.5 77 66.2
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 1.1e-16 90.5 89 59.6
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.1e-16 90.5 140 42.9
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 1.4e-16 90.1 132 41.7
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 1.8e-16 89.7 83 61.4
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 2.4e-16 89.4 110 51.8
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 4.1e-16 88.6 162 43.8
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 5.3e-16 88.2 125 44.8
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 6.9e-16 87.8 120 50.0
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 9.1e-16 87.4 86 59.3
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 1.2e-15 87.0 120 42.5
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 1.2e-15 87.0 135 43.0
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 1.5e-15 86.7 127 46.5
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 2.0e-15 86.3 75 62.7
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 2.0e-15 86.3 85 58.8
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.0e-15 86.3 70 68.6
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 7.7e-15 84.3 117 47.9
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.0e-14 84.0 119 47.1
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.0e-14 84.0 116 47.4
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 1.0e-14 84.0 119 47.1
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 1.0e-14 84.0 134 43.3
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 1.3e-14 83.6 82 58.5
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 1.3e-14 83.6 82 58.5
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 1.3e-14 83.6 82 58.5
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.3e-14 83.6 75 61.3
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 1.7e-14 83.2 75 61.3
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 1.7e-14 83.2 75 61.3
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 1.7e-14 83.2 82 58.5
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 1.7e-14 83.2 75 61.3
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 1.7e-14 83.2 75 61.3
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 1.7e-14 83.2 82 58.5
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 1.7e-14 83.2 75 61.3
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 1.7e-14 83.2 82 58.5
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 1.7e-14 83.2 75 61.3
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 2.2e-14 82.8 75 60.0
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 2.2e-14 82.8 115 47.8
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 2.9e-14 82.4 139 40.3
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 3.8e-14 82.0 82 58.5
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 5.0e-14 81.6 86 55.8
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 6.5e-14 81.3 95 51.6
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 8.5e-14 80.9 82 57.3
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 8.5e-14 80.9 84 57.1
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 8.5e-14 80.9 75 60.0
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.1e-13 80.5 72 62.5
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 1.4e-13 80.1 139 43.2
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 3.2e-13 79.0 117 46.2
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 3.2e-13 79.0 130 41.5
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 4.2e-13 78.6 81 55.6
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.5e-13 78.2 116 39.7
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 7.2e-13 77.8 127 42.5
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 9.4e-13 77.4 126 42.9
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 4.7e-12 75.1 131 38.9
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 1.0e-11 73.9 125 40.8
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 1.4e-11 73.6 124 42.7
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 1.8e-11 73.2 131 39.7
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 3.9e-11 72.0 130 42.3
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 3.9e-11 72.0 80 47.5
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.9e-11 72.0 73 53.4
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 3.9e-11 72.0 121 43.8
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 5.1e-11 71.6 72 54.2
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 5.1e-11 71.6 80 47.5
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 6.7e-11 71.2 88 51.1
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 8.8e-11 70.9 125 38.4
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 1.5e-10 70.1 77 51.9
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 1.5e-10 70.1 129 40.3
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 1.5e-10 70.1 99 43.4
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 1.5e-10 70.1 124 38.7
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 2.0e-10 69.7 86 54.7
CDE07G0213 Ceratophyllum demersum HOM05D005113 ORTHO05D006045 2.0e-10 69.7 120 39.2
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 2.0e-10 69.7 79 54.4
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 2.6e-10 69.3 124 40.3
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 2.6e-10 69.3 126 36.5
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 4.4e-10 68.6 124 37.9
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 5.7e-10 68.2 84 50.0
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 5.7e-10 68.2 135 35.6
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 5.7e-10 68.2 126 38.1
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 7.4e-10 67.8 75 52.0
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 7.4e-10 67.8 74 55.4
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 7.4e-10 67.8 74 55.4
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 7.4e-10 67.8 127 37.0
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 1.7e-09 66.6 132 38.6
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 2.2e-09 66.2 74 54.1
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 2.2e-09 66.2 74 54.1
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 2.2e-09 66.2 74 54.1
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 2.8e-09 65.9 127 36.2
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 3.7e-09 65.5 74 48.6
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 4.8e-09 65.1 123 39.0
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 8.2e-09 64.3 74 47.3
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 1.4e-08 63.5 72 51.4
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 1.8e-08 63.2 114 38.6
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 2.4e-08 62.8 77 46.8
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 2.4e-08 62.8 95 45.3
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 4.1e-08 62.0 84 45.2
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 5.3e-08 61.6 137 32.1
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 9.1e-08 60.8 123 36.6
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 9.1e-08 60.8 129 33.3
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 1.2e-07 60.5 129 34.1
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 1.5e-07 60.1 126 33.3
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 2.0e-07 59.7 83 49.4
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 2.0e-07 59.7 124 36.3
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 2.0e-07 59.7 114 37.7
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 2.0e-07 59.7 119 39.5
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 2.6e-07 59.3 144 31.9
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 3.4e-07 58.9 125 35.2
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 3.4e-07 58.9 139 30.9
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 3.4e-07 58.9 137 32.1
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 3.4e-07 58.9 131 30.5
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 4.5e-07 58.5 125 29.6
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 4.5e-07 58.5 128 32.0
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 5.9e-07 58.2 140 32.1
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 7.7e-07 57.8 130 33.1
CAN.G403.8 Capsicum annuum HOM05D002758 ORTHO05D002885 1.0e-06 57.4 151 33.1
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.0e-06 57.4 136 33.1
CiPaw.03G244800 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.3e-06 57.0 149 32.9
MSTRG.10674 Avicennia marina HOM05D002758 ORTHO05D002885 1.7e-06 56.6 131 32.8
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 1.7e-06 56.6 138 31.9
ATR0697G281 Amborella trichopoda HOM05D005113 ORTHO05D063041 2.2e-06 56.2 71 45.1
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 2.2e-06 56.2 138 33.3
Nitab4.5_0000028g0360 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.2e-06 56.2 143 30.1
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 2.2e-06 56.2 137 32.1
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 2.2e-06 56.2 144 30.6
Migut.K00449 Erythranthe guttata HOM05D002758 ORTHO05D002885 2.9e-06 55.8 65 49.2
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.8e-06 55.5 127 33.1
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.8e-06 55.5 127 33.1
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.8e-06 55.5 127 33.1
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 3.8e-06 55.5 130 31.5
Eucgr.C01181 Eucalyptus grandis HOM05D002758 ORTHO05D002885 5.0e-06 55.1 133 33.1
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 5.0e-06 55.1 138 31.9
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 5.0e-06 55.1 127 31.5
Sc08g0006550 Simmondsia chinensis HOM05D002758 ORTHO05D002885 5.0e-06 55.1 118 36.4
Cc06_g08410 Coffea canephora HOM05D002758 ORTHO05D002885 8.5e-06 54.3 138 32.6


User provided reference genes

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