Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 1.2e-74 283.1 145 100.0
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.4e-30 136.7 149 55.7
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.8e-30 136.3 153 57.5
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 5.6e-24 114.8 151 49.0
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 7.4e-24 114.4 148 46.6
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.7e-23 112.1 154 50.0
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 5.8e-21 104.8 147 49.0
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 1.7e-20 103.2 150 48.0
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 4.9e-20 101.7 149 47.7
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 1.4e-19 100.1 147 46.9
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 1.9e-19 99.8 59 79.7
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 2.5e-19 99.4 158 43.0
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 2.5e-19 99.4 144 45.8
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 3.2e-19 99.0 137 46.7
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 4.2e-19 98.6 146 44.5
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 5.5e-19 98.2 157 47.8
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.5e-19 98.2 153 42.5
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 9.3e-19 97.4 68 70.6
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 9.3e-19 97.4 68 70.6
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 9.3e-19 97.4 68 70.6
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 9.3e-19 97.4 149 45.6
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.1e-18 96.3 155 45.8
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.1e-18 96.3 120 49.2
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 2.1e-18 96.3 147 46.9
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 2.1e-18 96.3 149 45.6
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 2.7e-18 95.9 146 44.5
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 3.5e-18 95.5 150 46.7
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 3.5e-18 95.5 148 43.9
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 3.5e-18 95.5 152 46.1
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 4.6e-18 95.1 150 48.0
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 4.6e-18 95.1 154 50.6
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 4.6e-18 95.1 145 45.5
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 4.6e-18 95.1 95 56.8
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 4.6e-18 95.1 95 56.8
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 4.6e-18 95.1 150 44.0
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 6.0e-18 94.7 146 48.6
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 1.0e-17 94.0 123 48.8
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 1.3e-17 93.6 152 42.8
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.3e-17 93.6 149 43.6
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 1.3e-17 93.6 151 45.0
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 1.3e-17 93.6 155 42.6
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 2.3e-17 92.8 151 44.4
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 2.3e-17 92.8 152 46.1
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 3.9e-17 92.0 144 45.8
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.9e-17 92.0 154 44.8
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 5.1e-17 91.7 74 66.2
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 5.1e-17 91.7 97 52.6
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 5.1e-17 91.7 163 39.9
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 6.7e-17 91.3 150 43.3
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 8.7e-17 90.9 144 45.8
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 1.1e-16 90.5 108 52.8
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.1e-16 90.5 113 54.0
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.1e-16 90.5 147 45.6
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.5e-16 90.1 67 70.1
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.9e-16 89.7 149 39.6
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 1.9e-16 89.7 158 43.7
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 2.5e-16 89.4 87 56.3
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.5e-16 89.4 150 43.3
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 5.7e-16 88.2 149 43.0
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.7e-16 88.2 152 39.5
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 7.4e-16 87.8 147 44.2
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 7.4e-16 87.8 147 42.9
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 7.4e-16 87.8 84 57.1
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 9.7e-16 87.4 124 48.4
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 9.7e-16 87.4 151 41.1
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.3e-15 87.0 154 42.9
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.3e-15 87.0 148 39.2
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 1.6e-15 86.7 146 42.5
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 2.2e-15 86.3 147 44.2
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 2.8e-15 85.9 150 44.0
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 4.8e-15 85.1 55 70.9
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 4.8e-15 85.1 153 41.8
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 6.3e-15 84.7 108 48.1
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 6.3e-15 84.7 108 48.1
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 6.3e-15 84.7 153 41.2
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 1.4e-14 83.6 150 44.0
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 1.4e-14 83.6 83 56.6
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 1.4e-14 83.6 89 55.1
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 1.4e-14 83.6 67 62.7
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 2.4e-14 82.8 108 49.1
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 3.1e-14 82.4 52 73.1
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 4.1e-14 82.0 57 64.9
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 4.1e-14 82.0 149 42.3
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 5.3e-14 81.6 145 41.4
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 5.3e-14 81.6 55 70.9
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 5.3e-14 81.6 119 45.4
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 6.9e-14 81.3 64 62.5
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 6.9e-14 81.3 97 47.4
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 6.9e-14 81.3 53 73.6
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 9.0e-14 80.9 108 48.1
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 9.0e-14 80.9 145 39.3
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.2e-13 80.5 144 43.1
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 1.2e-13 80.5 145 41.4
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 1.2e-13 80.5 135 43.7
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.5e-13 80.1 145 40.7
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 1.5e-13 80.1 117 43.6
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.0e-13 79.7 52 71.2
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 2.0e-13 79.7 52 71.2
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 2.0e-13 79.7 169 36.7
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 4.5e-13 78.6 156 39.7
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 4.5e-13 78.6 133 41.4
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 5.9e-13 78.2 118 44.1
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 7.7e-13 77.8 143 37.1
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 7.7e-13 77.8 143 41.3
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 7.7e-13 77.8 64 56.2
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.0e-12 77.4 151 41.1
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.3e-12 77.0 151 41.1
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.3e-12 77.0 84 50.0
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 1.3e-12 77.0 69 58.0
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 1.7e-12 76.6 48 72.9
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 2.2e-12 76.3 146 41.1
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 2.9e-12 75.9 148 39.2
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 5.0e-12 75.1 146 39.7
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 6.5e-12 74.7 61 62.3
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.1e-11 73.9 167 37.1
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 2.5e-11 72.8 78 50.0
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 3.2e-11 72.4 126 37.3
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 4.2e-11 72.0 50 66.0
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 1.8e-09 66.6 41 73.2
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 2.3e-09 66.2 36 86.1
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 2.3e-09 66.2 53 62.3
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 5.1e-09 65.1 36 83.3
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 2.0e-08 63.2 37 73.0
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.5e-08 62.8 125 35.2
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 3.3e-08 62.4 36 77.8
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 9.7e-08 60.8 35 77.1
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 6.9e-06 54.7 153 35.3


User provided reference genes

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