Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 2.5e-65 252.3 122 100.0
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 7.3e-57 224.2 122 89.3
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 2.1e-35 152.9 116 69.0
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 7.6e-30 134.4 117 56.4
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 6.4e-29 131.3 117 57.3
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 6.4e-29 131.3 103 60.2
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 6.4e-29 131.3 118 55.1
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.1e-28 130.6 117 56.4
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.9e-28 129.8 115 58.3
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 5.4e-28 128.3 115 56.5
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 1.6e-27 126.7 114 54.4
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 2.7e-27 125.9 119 55.5
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 2.7e-27 125.9 87 65.5
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 3.5e-27 125.6 113 56.6
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 4.6e-27 125.2 117 55.6
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 7.9e-27 124.4 115 54.8
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 1.0e-26 124.0 107 57.9
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.3e-26 123.6 115 55.7
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 1.3e-26 123.6 127 56.7
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 1.8e-26 123.2 115 54.8
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 5.1e-26 121.7 110 57.3
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 5.1e-26 121.7 115 53.9
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 8.7e-26 120.9 117 52.1
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 8.7e-26 120.9 115 53.9
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 2.5e-25 119.4 111 55.0
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 3.7e-24 115.5 117 52.1
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 3.7e-24 115.5 118 48.3
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 3.7e-24 115.5 113 53.1
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.4e-23 113.6 123 51.2
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.4e-23 113.6 123 51.2
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 3.1e-23 112.5 131 48.9
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.0e-23 112.1 123 50.4
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 4.0e-23 112.1 111 50.5
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 5.3e-23 111.7 123 50.4
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 6.9e-23 111.3 78 62.8
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 4.5e-22 108.6 126 50.0
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 9.9e-22 107.5 116 50.0
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 1.3e-21 107.1 117 48.7
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.7e-21 106.7 107 51.4
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 2.9e-21 105.9 118 46.6
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 3.8e-21 105.5 126 41.3
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 6.4e-21 104.8 105 51.4
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 8.4e-21 104.4 127 40.2
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 8.4e-21 104.4 125 48.8
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 8.4e-21 104.4 125 44.0
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.1e-20 104.0 127 40.2
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 1.1e-20 104.0 120 45.8
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.1e-20 104.0 123 48.0
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 1.1e-20 104.0 109 52.3
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.4e-20 103.6 125 47.2
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.9e-20 103.2 126 42.1
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.9e-20 103.2 125 47.2
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 1.9e-20 103.2 119 45.4
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.5e-20 102.8 123 48.0
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.5e-20 102.8 123 48.0
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 5.5e-20 101.7 127 40.2
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 5.5e-20 101.7 120 48.3
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 5.5e-20 101.7 125 47.2
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 5.5e-20 101.7 125 46.4
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 7.1e-20 101.3 125 47.2
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 9.3e-20 100.9 101 44.6
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 1.6e-19 100.1 78 59.0
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 2.1e-19 99.8 118 48.3
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 3.5e-19 99.0 125 40.8
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 3.5e-19 99.0 85 57.6
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 4.6e-19 98.6 130 43.1
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 6.0e-19 98.2 126 40.5
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 6.0e-19 98.2 126 40.5
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 6.0e-19 98.2 128 39.8
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 6.0e-19 98.2 101 44.6
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 1.0e-18 97.4 126 39.7
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 1.0e-18 97.4 126 39.7
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 1.0e-18 97.4 126 39.7
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 1.0e-18 97.4 128 39.8
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 1.3e-18 97.1 112 50.0
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 1.8e-18 96.7 125 38.4
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 1.8e-18 96.7 128 39.8
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.8e-18 96.7 122 42.6
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 2.3e-18 96.3 120 48.3
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 3.9e-18 95.5 103 46.6
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 5.1e-18 95.1 120 45.0
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.1e-17 94.0 116 49.1
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 1.1e-17 94.0 101 46.5
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.5e-17 93.6 116 49.1
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 1.5e-17 93.6 122 41.0
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 1.5e-17 93.6 56 69.6
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 2.5e-17 92.8 113 41.6
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 7.4e-17 91.3 109 45.9
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 9.6e-17 90.9 88 50.0
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 1.3e-16 90.5 120 45.0
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 1.3e-16 90.5 65 64.6
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 2.8e-16 89.4 68 61.8
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 4.0e-15 85.5 110 44.5
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 5.3e-15 85.1 57 63.2
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 2.0e-14 83.2 110 39.1
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 2.0e-14 83.2 110 43.6
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 2.6e-14 82.8 116 40.5
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 3.4e-14 82.4 114 43.9
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.7e-13 80.1 115 43.5
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 6.5e-13 78.2 103 44.7
HPP92_020058 Vanilla planifolia HOM05D003240 ORTHO05D009426 6.3e-08 61.6 102 36.3
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 4.5e-06 55.5 52 42.3
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 5.9e-06 55.1 60 43.3


User provided reference genes

Program Settings