Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.9e-220 768.8 379 100.0
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 4.1e-183 644.8 376 82.2
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.2e-182 643.3 343 90.4
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.7e-182 640.6 377 82.0
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.7e-182 640.6 377 82.0
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 1.7e-181 639.4 377 81.4
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 5.0e-181 637.9 376 81.4
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 8.5e-181 637.1 378 81.2
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.9e-180 636.0 375 81.3
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 2.1e-179 632.5 378 80.4
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 2.8e-179 632.1 376 81.6
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 6.1e-179 630.9 375 80.5
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 3.0e-178 628.6 392 79.3
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 3.0e-178 628.6 344 86.9
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 4.0e-178 628.2 377 79.8
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 6.8e-178 627.5 375 78.9
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 2.0e-177 625.9 377 79.0
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 2.0e-177 625.9 375 78.7
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 3.4e-177 625.2 364 82.7
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 4.4e-177 624.8 360 83.1
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 5.7e-177 624.4 376 79.3
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 9.8e-177 623.6 376 77.9
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 2.2e-176 622.5 346 85.3
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 2.2e-176 622.5 344 84.3
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 3.7e-176 621.7 377 79.8
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 4.9e-176 621.3 367 80.1
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 4.9e-176 621.3 345 85.8
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 1.1e-175 620.2 377 78.0
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 2.4e-175 619.0 374 78.9
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.4e-175 619.0 345 84.9
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 9.2e-175 617.1 371 79.2
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 9.2e-175 617.1 344 84.0
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 2.0e-174 615.9 394 76.1
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 3.5e-174 615.1 345 84.3
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 3.5e-174 615.1 346 84.1
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 7.8e-174 614.0 378 77.8
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 2.3e-173 612.5 367 79.3
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 3.8e-173 611.7 346 82.7
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 5.0e-173 611.3 376 77.9
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 5.0e-173 611.3 371 79.5
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.1e-172 610.1 365 80.5
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 1.5e-172 609.8 381 77.2
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 1.9e-172 609.4 379 77.3
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 1.9e-172 609.4 374 77.5
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 2.5e-172 609.0 377 77.5
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 5.6e-172 607.8 379 77.3
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 5.6e-172 607.8 378 76.7
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 7.3e-172 607.4 374 77.5
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 9.5e-172 607.1 344 84.0
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.2e-171 606.7 343 83.7
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 1.6e-171 606.3 375 77.3
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.6e-171 606.3 344 83.4
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 2.1e-171 605.9 375 76.5
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 2.8e-171 605.5 370 78.9
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 6.1e-171 604.4 377 76.1
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 6.1e-171 604.4 343 84.0
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 8.0e-171 604.0 354 81.4
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 1.0e-170 603.6 379 76.8
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 1.0e-170 603.6 376 75.3
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.4e-170 603.2 345 83.5
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.8e-170 602.8 346 80.6
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 2.3e-170 602.4 375 77.1
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 2.3e-170 602.4 341 83.6
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 6.8e-170 600.9 370 77.8
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 6.8e-170 600.9 346 82.4
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.5e-169 599.7 349 83.1
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 1.5e-169 599.7 346 80.9
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 2.0e-169 599.4 359 79.7
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 2.6e-169 599.0 357 81.5
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 5.7e-169 597.8 375 76.3
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 7.5e-169 597.4 343 81.9
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 9.8e-169 597.0 344 81.7
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.3e-168 596.7 344 81.4
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 1.7e-168 596.3 350 79.7
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 2.2e-168 595.9 343 81.6
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 3.7e-168 595.1 377 74.8
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 4.9e-168 594.7 374 76.2
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 8.3e-168 594.0 363 78.2
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.1e-167 593.6 348 81.0
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 2.4e-167 592.4 341 81.2
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 4.1e-167 591.7 341 82.7
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 5.4e-167 591.3 347 80.4
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.6e-166 589.7 341 81.8
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 2.0e-166 589.3 341 80.9
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 5.9e-166 587.8 345 80.9
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 7.8e-166 587.4 344 79.1
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 7.8e-166 587.4 341 81.8
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 1.3e-165 586.6 358 78.8
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.3e-165 585.9 341 80.6
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 3.0e-165 585.5 383 74.4
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 8.6e-165 583.9 341 81.5
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 8.6e-165 583.9 344 81.4
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 1.1e-164 583.6 343 80.2
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.6e-164 581.3 395 72.4
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 1.2e-163 580.1 386 73.6
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 1.5e-161 573.2 373 75.1
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 1.4e-159 566.6 442 64.3
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 4.1e-159 565.1 344 79.7
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 5.6e-156 554.7 478 59.8
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 1.1e-154 550.4 388 69.3
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.1e-151 540.4 344 73.8
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 4.1e-151 538.5 356 73.9
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 1.2e-147 526.9 341 74.8
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.1e-146 523.9 304 81.9
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 5.2e-146 521.5 360 72.5
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 3.2e-143 512.3 348 71.8
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 7.1e-143 511.1 339 70.8
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.5e-140 503.4 339 70.5
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 3.3e-140 502.3 375 67.2
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 2.4e-138 496.1 270 87.4
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 4.5e-129 465.3 329 66.9
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.2e-127 458.8 258 81.8
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.0e-125 454.1 312 72.4
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 5.1e-125 451.8 312 71.8
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.3e-124 449.1 255 82.0
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 8.1e-123 444.5 407 59.0
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 2.4e-122 443.0 339 63.1
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.9e-114 414.8 392 57.9
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.7e-112 410.2 232 80.6
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 3.5e-110 402.5 228 84.6
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 5.7e-108 395.2 339 55.5
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.6e-107 393.7 359 59.6
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 1.6e-102 377.1 249 72.7
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 3.8e-96 355.9 220 79.1
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 6.5e-96 355.1 348 51.7
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.2e-94 350.9 339 51.3
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 2.8e-91 339.7 254 69.3
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 1.7e-88 330.5 190 84.2
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 7.0e-82 308.5 175 83.4
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 4.8e-75 285.8 221 65.2
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 4.7e-62 242.7 155 77.4
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 2.0e-60 237.3 165 72.1
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 1.0e-53 214.9 115 82.6
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.8e-53 214.2 117 83.8
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 1.4e-50 204.5 344 38.4
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 3.2e-42 176.8 94 86.2
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 5.1e-40 169.5 99 82.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.2e-38 164.9 276 41.3
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.4e-36 156.8 363 31.7
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-24 118.2 81 75.3
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.6e-22 111.3 95 56.8
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 4.7e-22 109.8 257 32.7
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 9.0e-21 105.5 169 40.8
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 7.1e-18 95.9 85 57.6
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 2.0e-12 77.8 45 77.8
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.2e-11 74.3 41 75.6


User provided reference genes

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