Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06500 Nelumbo nucifera HOM05D006845 ORTHO05D009300 2.0e-280 968.4 464 100.0
TAR627G0110 Trochodendron aralioides HOM05D006845 ORTHO05D009300 8.5e-223 776.9 424 85.6
Thecc.07G091800 Theobroma cacao HOM05D006845 ORTHO05D009300 6.5e-215 750.7 422 82.0
GSVIVG01014313001 Vitis vinifera HOM05D006845 ORTHO05D009300 1.2e-213 746.5 424 82.3
Dinv14926 Davidia involucrata HOM05D006845 ORTHO05D009300 5.1e-212 741.1 420 82.6
Gohir.D08G031900 Gossypium hirsutum HOM05D006845 ORTHO05D009300 8.8e-212 740.3 422 80.8
Gohir.A08G021200 Gossypium hirsutum HOM05D006845 ORTHO05D009300 1.5e-211 739.6 422 80.8
PSO541G3085 Papaver somniferum HOM05D006845 ORTHO05D009300 4.1e-209 731.5 424 79.0
PSO675G5588 Papaver somniferum HOM05D006845 ORTHO05D009300 4.1e-209 731.5 424 78.8
Potri.011G118000 Populus trichocarpa HOM05D006845 ORTHO05D009300 4.1e-209 731.5 423 80.1
Gorai.004G029400 Gossypium raimondii HOM05D006845 ORTHO05D009300 7.0e-209 730.7 422 79.9
Potri.001G398900 Populus trichocarpa HOM05D006845 ORTHO05D009300 9.1e-209 730.3 410 81.7
CiPaw.11G170600 Carya illinoinensis HOM05D006845 ORTHO05D009300 2.0e-208 729.2 410 81.2
Eucgr.F01150 Eucalyptus grandis HOM05D006845 ORTHO05D009300 2.6e-208 728.8 424 79.0
QL08p022228 Quercus lobata HOM05D006845 ORTHO05D009300 4.5e-208 728.0 422 78.7
Prupe.4G179900 Prunus persica HOM05D006845 ORTHO05D009300 5.9e-208 727.6 423 79.9
CSS0022560 Camellia sinensis var. sinensis HOM05D006845 ORTHO05D009300 2.2e-207 725.7 425 79.3
PGR083G0376 Punica granatum HOM05D006845 ORTHO05D009300 5.0e-207 724.5 423 78.3
Sopen12g007210 Solanum pennellii HOM05D006845 ORTHO05D009300 1.1e-206 723.4 425 78.4
Solyc12g013890.2 Solanum lycopersicum HOM05D006845 ORTHO05D009300 1.5e-206 723.0 425 78.1
Manes.15G087900 Manihot esculenta HOM05D006845 ORTHO05D009300 2.5e-206 722.2 423 79.7
RcHm_v2.0_Chr5g0033181 Rosa chinensis HOM05D006845 ORTHO05D009300 1.0e-204 716.8 416 79.1
Atru.chr2.2481 Acer truncatum HOM05D006845 ORTHO05D009300 3.0e-204 715.3 412 80.1
Aqoxy1G02380 Aquilegia oxysepala HOM05D006845 ORTHO05D009300 8.8e-204 713.8 423 78.7
Cfa020572 Carpinus fangiana HOM05D006845 ORTHO05D009300 4.4e-203 711.4 412 80.6
CANSAT56G3540 Cannabis sativa HOM05D006845 ORTHO05D009300 1.7e-202 709.5 426 76.8
FvH4_3g19780 Fragaria vesca HOM05D006845 ORTHO05D009300 1.1e-201 706.8 416 77.9
Hma1.2p1_0898F.1_g234490 Hydrangea macrophylla HOM05D006845 ORTHO05D009300 1.1e-201 706.8 413 77.7
MD11G1250000 Malus domestica HOM05D006845 ORTHO05D009300 1.1e-201 706.8 420 76.7
COL.COLO4_27185 Corchorus olitorius HOM05D006845 ORTHO05D009300 1.2e-200 703.4 423 75.7
Carub.0008s1415 Capsella rubella HOM05D006845 ORTHO05D009300 2.6e-200 702.2 423 75.4
Ciclev10008389m.g Citrus clementina HOM05D006845 ORTHO05D009300 2.6e-200 702.2 427 75.9
ATR0737G060 Amborella trichopoda HOM05D006845 ORTHO05D009300 3.5e-200 701.8 422 77.3
AL8G28920 Arabidopsis lyrata HOM05D006845 ORTHO05D009300 1.3e-199 699.9 423 74.9
CAN.G213.11 Capsicum annuum HOM05D006845 ORTHO05D009300 1.3e-199 699.9 424 76.7
ClCG11G018010 Citrullus lanatus HOM05D006845 ORTHO05D009300 5.0e-199 698.0 413 77.0
AT5G53860 Arabidopsis thaliana HOM05D006845 ORTHO05D009300 1.5e-198 696.4 423 74.7
CDE02G1035 Ceratophyllum demersum HOM05D006845 ORTHO05D009300 2.5e-198 695.7 423 75.4
CARHR266990 Cardamine hirsuta HOM05D006845 ORTHO05D009300 3.2e-198 695.3 423 74.7
MSTRG.14352 Avicennia marina HOM05D006845 ORTHO05D009300 7.2e-198 694.1 425 74.1
Sp6g15920 Schrenkiella parvula HOM05D006845 ORTHO05D009300 4.7e-197 691.4 423 74.2
Sed0008037 Sechium edule HOM05D006845 ORTHO05D009300 1.4e-196 689.9 423 74.2
Thhalv10013651m.g Eutrema salsugineum HOM05D006845 ORTHO05D009300 2.3e-196 689.1 423 73.5
A10p11250 Brassica napus HOM05D006845 ORTHO05D009300 3.0e-196 688.7 423 74.0
C09p43870 Brassica napus HOM05D006845 ORTHO05D009300 4.0e-196 688.3 423 74.0
Glyma.12G225400 Glycine max HOM05D006845 ORTHO05D009300 5.2e-196 688.0 424 74.1
Oeu051072.2 Olea europaea HOM05D006845 ORTHO05D009300 6.8e-196 687.6 450 72.0
BcaC04g20411 Brassica carinata HOM05D006845 ORTHO05D009300 1.2e-195 686.8 423 74.0
FAN11G1119 Fragaria x ananassa HOM05D006845 ORTHO05D009300 2.6e-195 685.6 410 77.6
arahy.Tifrunner.gnm1.ann1.61G52X Arachis hypogaea HOM05D006845 ORTHO05D009300 3.4e-195 685.3 416 73.8
BcaB08g35745 Brassica carinata HOM05D006845 ORTHO05D009300 4.4e-195 684.9 423 73.5
AUR62039192 Chenopodium quinoa HOM05D006845 ORTHO05D009300 4.4e-195 684.9 424 73.8
THA.LOC104811867 Tarenaya hassleriana HOM05D006845 ORTHO05D009300 4.4e-195 684.9 423 74.5
Lj3g0006633 Lotus japonicus HOM05D006845 ORTHO05D009300 7.5e-195 684.1 416 75.2
TWI39G1089 Tripterygium wilfordii HOM05D006845 ORTHO05D009300 1.3e-194 683.3 423 74.0
Migut.H01945 Erythranthe guttata HOM05D006845 ORTHO05D009300 1.7e-194 682.9 425 70.8
Glyma.13G275900 Glycine max HOM05D006845 ORTHO05D009300 3.7e-194 681.8 424 73.6
Lalb_Chr25g0286311 Lupinus albus HOM05D006845 ORTHO05D009300 4.8e-194 681.4 403 76.7
DCAR_017135 Daucus carota HOM05D006845 ORTHO05D009300 8.3e-194 680.6 407 76.7
arahy.Tifrunner.gnm1.ann1.ME6152 Arachis hypogaea HOM05D006845 ORTHO05D009300 1.8e-193 679.5 416 73.3
Nitab4.5_0003378g0090 Nicotiana tabacum HOM05D006845 ORTHO05D009300 2.4e-193 679.1 425 76.2
FAN21G2917 Fragaria x ananassa HOM05D006845 ORTHO05D009300 3.1e-193 678.7 421 75.3
CsaV3_4G033630 Cucumis sativus L. HOM05D006845 ORTHO05D009300 4.1e-193 678.3 423 72.3
EL10Ac4g08199 Beta vulgaris HOM05D006845 ORTHO05D009300 7.0e-193 677.6 423 73.3
MD03G1229200 Malus domestica HOM05D006845 ORTHO05D009300 2.0e-192 676.0 421 75.1
MELO3C016692.2 Cucumis melo HOM05D006845 ORTHO05D009300 3.5e-192 675.2 419 73.3
AUR62019438 Chenopodium quinoa HOM05D006845 ORTHO05D009300 1.7e-191 672.9 412 74.0
Duzib213G0603 Durio zibethinus HOM05D006845 ORTHO05D009300 2.9e-191 672.2 423 74.5
Peaxi162Scf00000g00345 Petunia axillaris HOM05D006845 ORTHO05D009300 2.9e-191 672.2 425 75.1
VMungo1080G1688 Vigna mungo HOM05D006845 ORTHO05D009300 1.9e-190 669.5 424 74.1
Sabra16G0261500 Salix brachista HOM05D006845 ORTHO05D009300 3.2e-190 668.7 540 62.2
Aa31LG3G10070 Aethionema arabicum HOM05D006845 ORTHO05D009300 2.1e-189 666.0 402 75.9
Actinidia18770 Actinidia chinensis HOM05D006845 ORTHO05D009300 2.7e-189 665.6 388 77.8
Phvul.005G073100 Phaseolus vulgaris HOM05D006845 ORTHO05D009300 1.8e-188 662.9 424 73.1
HanXRQChr12g0364151 Helianthus annuus HOM05D006845 ORTHO05D009300 5.2e-188 661.4 424 70.8
FAN25G1923 Fragaria x ananassa HOM05D006845 ORTHO05D009300 1.7e-186 656.4 416 73.3
Lsat_1_v5_gn_9_97520 Lactuca sativa HOM05D006845 ORTHO05D009300 1.7e-183 646.4 418 71.5
FAN16G0640 Fragaria x ananassa HOM05D006845 ORTHO05D009300 8.0e-181 637.5 410 73.4
BolC9t57269H Brassica oleracea HOM05D006845 ORTHO05D009300 1.2e-179 633.6 434 68.2
HPP92_003615 Vanilla planifolia HOM05D006845 ORTHO05D009300 1.3e-178 630.2 422 68.5
BraA10t43218Z Brassica rapa HOM05D006845 ORTHO05D009300 1.7e-175 619.8 468 63.7
SGA_v2.0_scaffold70G23678 Striga asiatica HOM05D006845 ORTHO05D009300 8.6e-175 617.5 409 68.7
Nitab4.5_0000332g0060 Nicotiana tabacum HOM05D006845 ORTHO05D009300 3.6e-173 612.1 458 65.9
Ca_03508_v3 Cicer arietinum L. HOM05D006845 ORTHO05D009300 8.0e-173 610.9 412 69.2
Ah.06g184430 Amaranthus hybridus HOM05D006845 ORTHO05D009300 2.9e-170 602.4 412 69.4
Actinidia35244 Actinidia chinensis HOM05D006845 ORTHO05D009300 9.8e-163 577.4 415 67.7
Psat5g242160 Pisum sativum HOM05D006845 ORTHO05D009300 9.5e-158 560.8 404 65.3
Sc16g0007040 Simmondsia chinensis HOM05D006845 ORTHO05D009300 2.6e-155 552.7 312 79.8
Medtr2g079060 Medicago truncatula HOM05D006845 ORTHO05D009300 4.9e-154 548.5 422 63.5
Lj1C841T8 Lonicera japonica HOM05D006845 ORTHO05D009300 6.4e-154 548.1 384 67.2
TPR.G7949 Trifolium pratense HOM05D006845 ORTHO05D009300 2.3e-151 539.7 363 70.2
Haze_09439 Corylus avellana HOM05D006845 ORTHO05D009300 3.1e-148 529.3 380 68.7
ECA240G2176 Erigeron canadensis HOM05D006845 ORTHO05D009300 1.1e-145 520.8 313 75.1
Cpa.g.sc80.77 Carica papaya HOM05D006845 ORTHO05D009300 1.8e-140 503.4 423 60.5
SEGI_13558 Sequoiadendron giganteum HOM05D006845 ORTHO05D009300 4.5e-99 365.9 351 47.0
Cc05_g11930 Coffea canephora HOM05D006845 ORTHO05D009300 6.5e-98 362.1 214 77.1
BcaB07g33336 Brassica carinata HOM05D006845 ORTHO05D009300 1.4e-92 344.4 197 78.7
Cc05_g11920 Coffea canephora HOM05D006845 ORTHO05D009300 3.8e-90 336.3 203 74.4
AagrBONN_evm.TU.Sc2ySwM_344.572 Anthoceros agrestis HOM05D006845 ORTHO05D009300 1.8e-87 327.4 347 44.1
Pp3c1_32740 Physcomitrium patens HOM05D006845 ORTHO05D009300 7.7e-83 312.0 345 43.5
Mapoly0037s0133 Marchantia polymorpha HOM05D006845 ORTHO05D009300 1.1e-73 281.6 367 37.1
SMO143G0137 Selaginella moellendorffii HOM05D006845 ORTHO05D009300 1.4e-63 248.1 280 41.4
unitig_899.g15568 Utricularia gibba HOM05D006845 ORTHO05D009300 1.8e-47 194.5 106 80.2
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 2.3e-39 167.5 103 72.8
Sabra11G0103000 Salix brachista HOM05D006845 ORTHO05D009300 9.9e-38 162.2 85 84.7
Lsat_1_v5_gn_4_31781 Lactuca sativa HOM05D006845 ORTHO05D014206 1.7e-37 161.4 114 66.7
Lsat_1_v5_gn_5_134240 Lactuca sativa HOM05D006845 ORTHO05D014206 1.7e-37 161.4 114 66.7
Lsat_1_v5_gn_7_62660 Lactuca sativa HOM05D006845 ORTHO05D014206 8.4e-37 159.1 103 69.9
BcaB04g16942 Brassica carinata HOM05D006845 ORTHO05D009300 2.4e-31 141.0 141 54.6
FAN12G2298 Fragaria x ananassa HOM05D006845 ORTHO05D014206 1.4e-15 88.6 49 81.6
FAN05G4902 Fragaria x ananassa HOM05D006845 ORTHO05D014206 6.9e-15 86.3 50 78.0
FAN25G3098 Fragaria x ananassa HOM05D006845 ORTHO05D014206 9.0e-15 85.9 49 79.6
FAN09G2373 Fragaria x ananassa HOM05D006845 ORTHO05D014206 2.1e-11 74.7 47 72.3
MBI02_g32976_MAGBIO Magnolia biondii HOM05D000872 ORTHO05D014206 5.1e-10 70.1 62 53.2
Hma1.2p1_0554F.1_g177810 Hydrangea macrophylla HOM05D006845 ORTHO05D014206 1.1e-07 62.4 45 62.2


User provided reference genes

Program Settings