Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06481 Nelumbo nucifera HOM05D002136 ORTHO05D002145 1.7e-61 239.2 122 100.0
Nn8g39864 Nelumbo nucifera HOM05D002136 ORTHO05D002145 1.1e-28 130.2 95 77.9
Nn1g06026 Nelumbo nucifera HOM05D002136 ORTHO05D002145 1.2e-22 110.2 101 64.4
MBI14_g24800_MAGBIO Magnolia biondii HOM05D002136 ORTHO05D002145 2.4e-20 102.4 112 53.6
Dinv42867 Davidia involucrata HOM05D000882 ORTHO05D001142 1.0e-18 97.1 114 50.0
Dinv43233 Davidia involucrata HOM05D000882 ORTHO05D001142 1.0e-18 97.1 114 50.0
Manes.14G112628 Manihot esculenta HOM05D002136 ORTHO05D002145 1.0e-18 97.1 128 50.0
TWI34G1274 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 1.3e-18 96.7 124 50.0
TAR625G1124 Trochodendron aralioides HOM05D002136 ORTHO05D002145 1.7e-18 96.3 107 57.9
TAR636G1536 Trochodendron aralioides HOM05D002136 ORTHO05D002145 6.6e-18 94.4 149 45.0
Ciclev10028046m.g Citrus clementina HOM05D002136 ORTHO05D002145 1.5e-17 93.2 125 48.0
Actinidia38334 Actinidia chinensis HOM05D000882 ORTHO05D001142 2.5e-17 92.4 114 49.1
Duzib168G2318 Durio zibethinus HOM05D002136 ORTHO05D002145 5.6e-17 91.3 115 47.0
Psat1g021960 Pisum sativum HOM05D002136 ORTHO05D002145 5.6e-17 91.3 115 49.6
Actinidia04291 Actinidia chinensis HOM05D000882 ORTHO05D001142 9.6e-17 90.5 114 50.0
Gohir.A06G096900 Gossypium hirsutum HOM05D002136 ORTHO05D002145 9.6e-17 90.5 113 47.8
Potri.018G108200 Populus trichocarpa HOM05D002136 ORTHO05D002145 9.6e-17 90.5 121 47.9
Duzib150G0547 Durio zibethinus HOM05D002136 ORTHO05D002145 1.6e-16 89.7 122 48.4
Potri.006G185700 Populus trichocarpa HOM05D002136 ORTHO05D002145 4.8e-16 88.2 117 47.9
Atru.chr7.100 Acer truncatum HOM05D002136 ORTHO05D002145 8.1e-16 87.4 125 44.0
TPR.G31935 Trifolium pratense HOM05D002136 ORTHO05D002145 8.1e-16 87.4 60 70.0
Gohir.D06G097400 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.1e-15 87.0 112 47.3
Gorai.010G112500 Gossypium raimondii HOM05D002136 ORTHO05D002145 1.1e-15 87.0 112 47.3
Medtr2g460800 Medicago truncatula HOM05D002136 ORTHO05D002145 1.1e-15 87.0 60 70.0
Lj9C716T6 Lonicera japonica HOM05D002136 ORTHO05D002145 1.4e-15 86.7 115 47.8
PSO339G5388 Papaver somniferum HOM05D002136 ORTHO05D002145 1.4e-15 86.7 108 51.9
Gohir.D05G053700 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.8e-15 86.3 119 44.5
Gorai.009G055500 Gossypium raimondii HOM05D002136 ORTHO05D002145 1.8e-15 86.3 119 44.5
PGR102G1057 Punica granatum HOM05D002136 ORTHO05D002145 1.8e-15 86.3 103 48.5
Thecc.09G032000 Theobroma cacao HOM05D002136 ORTHO05D002145 1.8e-15 86.3 120 45.0
CDE12G0918 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 2.4e-15 85.9 61 73.8
Manes.06G036600 Manihot esculenta HOM05D002136 ORTHO05D002145 3.1e-15 85.5 124 46.0
Gorai.013G216600 Gossypium raimondii HOM05D002136 ORTHO05D002145 4.0e-15 85.1 119 46.2
Rhsim01G0035300 Rhododendron simsii HOM05D000882 ORTHO05D001142 4.0e-15 85.1 118 44.1
VMungo1080G0769 Vigna mungo HOM05D002136 ORTHO05D002145 4.0e-15 85.1 64 64.1
Aqoxy7G03429 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 5.3e-15 84.7 109 47.7
Glyma.02G203100 Glycine max HOM05D002136 ORTHO05D002145 5.3e-15 84.7 60 66.7
Prupe.7G261500 Prunus persica HOM05D002136 ORTHO05D002145 5.3e-15 84.7 112 48.2
ATR0739G045 Amborella trichopoda HOM05D002136 ORTHO05D002145 6.9e-15 84.3 60 71.7
arahy.Tifrunner.gnm1.ann1.CL36ZV Arachis hypogaea HOM05D002136 ORTHO05D002145 6.9e-15 84.3 106 46.2
arahy.Tifrunner.gnm1.ann1.D8DRS0 Arachis hypogaea HOM05D002136 ORTHO05D002145 6.9e-15 84.3 106 46.2
CSS0001593 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 6.9e-15 84.3 60 68.3
MD15G1153100 Malus domestica HOM05D002136 ORTHO05D002145 6.9e-15 84.3 60 68.3
TWI63G0145 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 6.9e-15 84.3 60 71.7
Gohir.A05G052200 Gossypium hirsutum HOM05D002136 ORTHO05D002145 9.0e-15 84.0 128 45.3
SGA_v2.0_scaffold206G41810 Striga asiatica HOM05D002136 ORTHO05D002145 9.0e-15 84.0 64 65.6
Glyma.17G074600 Glycine max HOM05D002136 ORTHO05D002145 1.2e-14 83.6 60 65.0
Cc06_g15140 Coffea canephora HOM05D002136 ORTHO05D002145 1.5e-14 83.2 112 48.2
Sed0008209 Sechium edule HOM05D002136 ORTHO05D002145 1.5e-14 83.2 61 67.2
Aqoxy6G02864 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 2.0e-14 82.8 103 49.5
Duzib187G1505 Durio zibethinus HOM05D002136 ORTHO05D002145 2.0e-14 82.8 111 49.5
Lj6g0008983 Lotus japonicus HOM05D002136 ORTHO05D002145 2.0e-14 82.8 113 42.5
CSS0000642 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 2.6e-14 82.4 60 71.7
CSS0047757 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 2.6e-14 82.4 60 66.7
Ca_05791_v3 Cicer arietinum L. HOM05D002136 ORTHO05D002145 2.6e-14 82.4 118 44.1
Lalb_Chr08g0234111 Lupinus albus HOM05D002136 ORTHO05D002145 2.6e-14 82.4 60 63.3
CSS0035282 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 3.4e-14 82.0 59 67.8
CSS0036585 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 3.4e-14 82.0 59 67.8
Gohir.A13G184451 Gossypium hirsutum HOM05D002136 ORTHO05D002145 3.4e-14 82.0 116 44.8
Lsat_1_v5_gn_8_61721 Lactuca sativa HOM05D002136 ORTHO05D002145 4.5e-14 81.6 109 45.9
Phvul.005G040700 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 4.5e-14 81.6 60 63.3
Oeu021272.1 Olea europaea HOM05D002136 ORTHO05D002145 5.8e-14 81.3 111 44.1
Sabra18G0091800 Salix brachista HOM05D002136 ORTHO05D002145 5.8e-14 81.3 124 45.2
ClCG06G012320 Citrullus lanatus HOM05D002136 ORTHO05D002145 9.9e-14 80.5 60 66.7
Lalb_Chr11g0072721 Lupinus albus HOM05D002136 ORTHO05D002145 9.9e-14 80.5 60 61.7
Nitab4.5_0005188g0020 Nicotiana tabacum HOM05D002136 ORTHO05D002145 1.3e-13 80.1 119 45.4
MSTRG.26283 Avicennia marina HOM05D002136 ORTHO05D002145 1.7e-13 79.7 129 44.2
Glyma.06G221600 Glycine max HOM05D002136 ORTHO05D002145 1.7e-13 79.7 60 61.7
Gohir.D13G190800 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.7e-13 79.7 60 65.0
Lalb_Chr07g0179811 Lupinus albus HOM05D002136 ORTHO05D002145 1.7e-13 79.7 62 59.7
Phvul.009G206800 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 1.7e-13 79.7 60 65.0
Eucgr.C02575 Eucalyptus grandis HOM05D002136 ORTHO05D002145 2.2e-13 79.3 60 65.0
EL10Ac8g18853 Beta vulgaris HOM05D002136 ORTHO05D002145 2.9e-13 79.0 60 65.0
DCAR_019386 Daucus carota HOM05D002136 ORTHO05D002145 2.9e-13 79.0 106 42.5
Migut.K00334 Erythranthe guttata HOM05D002136 ORTHO05D002145 2.9e-13 79.0 60 66.7
FvH4_1g01050 Fragaria vesca HOM05D002136 ORTHO05D002145 3.8e-13 78.6 60 65.0
DCAR_014814 Daucus carota HOM05D002136 ORTHO05D002145 4.9e-13 78.2 115 42.6
SalBow1G7188 Salvia bowleyana HOM05D002136 ORTHO05D002145 6.4e-13 77.8 60 66.7
CDE02G0562 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 8.4e-13 77.4 118 44.9
Sabra06G0141000 Salix brachista HOM05D002136 ORTHO05D002145 8.4e-13 77.4 121 43.0
MSTRG.6123 Avicennia marina HOM05D002136 ORTHO05D002145 1.1e-12 77.0 108 46.3
CiPaw.15G175400 Carya illinoinensis HOM05D002136 ORTHO05D002145 1.1e-12 77.0 60 61.7
AUR62043252 Chenopodium quinoa HOM05D002136 ORTHO05D002145 1.1e-12 77.0 62 59.7
PGSC0003DMG400011178 Solanum tuberosum HOM05D002136 ORTHO05D002145 1.1e-12 77.0 101 47.5
AUR62039745 Chenopodium quinoa HOM05D002136 ORTHO05D002145 1.4e-12 76.6 62 59.7
RcHm_v2.0_Chr2g0085811 Rosa chinensis HOM05D002136 ORTHO05D002145 1.9e-12 76.3 59 66.1
CiPaw.16G113900 Carya illinoinensis HOM05D002136 ORTHO05D002145 2.4e-12 75.9 60 61.7
SalBow1G7717 Salvia bowleyana HOM05D002136 ORTHO05D002145 3.2e-12 75.5 67 58.2
CANSAT11G0512 Cannabis sativa HOM05D002136 ORTHO05D002145 4.2e-12 75.1 107 39.3
Solyc12g010120.2 Solanum lycopersicum HOM05D002136 ORTHO05D002145 4.2e-12 75.1 60 65.0
Sopen12g005000 Solanum pennellii HOM05D002136 ORTHO05D002145 4.2e-12 75.1 109 45.9
PGSC0003DMG400007900 Solanum tuberosum HOM05D002136 ORTHO05D002145 4.2e-12 75.1 60 65.0
Peaxi162Scf00252g00119 Petunia axillaris HOM05D002136 ORTHO05D002145 5.4e-12 74.7 127 38.6
Thhalv10013006m.g Eutrema salsugineum HOM05D002136 ORTHO05D002145 7.1e-12 74.3 60 61.7
Haze_19220 Corylus avellana HOM05D002136 ORTHO05D002145 9.3e-12 73.9 64 57.8
CsaV3_1G028840 Cucumis sativus L. HOM05D002136 ORTHO05D002145 9.3e-12 73.9 60 61.7
AL8G34080 Arabidopsis lyrata HOM05D002136 ORTHO05D002145 1.2e-11 73.6 60 63.3
AT5G58000 Arabidopsis thaliana HOM05D002136 ORTHO05D002145 1.2e-11 73.6 60 63.3
BcaB08g36161 Brassica carinata HOM05D002136 ORTHO05D002145 1.2e-11 73.6 60 60.0
A10p16180 Brassica napus HOM05D002136 ORTHO05D002145 1.2e-11 73.6 111 40.5
CARHR271790 Cardamine hirsuta HOM05D002136 ORTHO05D002145 1.2e-11 73.6 113 41.6
Cfa020837 Carpinus fangiana HOM05D002136 ORTHO05D002145 1.2e-11 73.6 60 60.0
Sp6g19660 Schrenkiella parvula HOM05D002136 ORTHO05D002145 1.2e-11 73.6 60 60.0
BraA10t43611Z Brassica rapa HOM05D002136 ORTHO05D002145 1.6e-11 73.2 60 60.0
CDE05G2969 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 1.6e-11 73.2 118 44.1
Nitab4.5_0002315g0120 Nicotiana tabacum HOM05D002136 ORTHO05D002145 1.6e-11 73.2 60 61.7
THA.LOC104818119 Tarenaya hassleriana HOM05D002136 ORTHO05D002145 1.6e-11 73.2 98 44.9
Nitab4.5_0001478g0030 Nicotiana tabacum HOM05D002136 ORTHO05D002145 2.7e-11 72.4 60 60.0
Aa31LG3G13790 Aethionema arabicum HOM05D002136 ORTHO05D002145 3.5e-11 72.0 117 43.6
C09p49820 Brassica napus HOM05D002136 ORTHO05D002145 4.6e-11 71.6 60 58.3
unitig_748.g7199 Utricularia gibba HOM05D002136 ORTHO05D002145 4.6e-11 71.6 65 55.4
BraA05t22884Z Brassica rapa HOM05D002136 ORTHO05D002145 6.0e-11 71.2 115 42.6
Carub.0008s1853 Capsella rubella HOM05D002136 ORTHO05D002145 6.0e-11 71.2 60 60.0
HanXRQChr05g0148671 Helianthus annuus HOM05D002136 ORTHO05D002145 7.9e-11 70.9 60 61.7
BolC9t57832H Brassica oleracea HOM05D002136 ORTHO05D002145 1.0e-10 70.5 60 58.3
BcaB05g22392 Brassica carinata HOM05D002136 ORTHO05D002145 1.3e-10 70.1 117 39.3
A02p08060 Brassica napus HOM05D002136 ORTHO05D002145 1.3e-10 70.1 59 61.0
BraA02t05879Z Brassica rapa HOM05D002136 ORTHO05D002145 1.3e-10 70.1 59 61.0
MELO3C010233.2 Cucumis melo HOM05D002136 ORTHO05D002145 1.3e-10 70.1 54 63.0
QL02p093024 Quercus lobata HOM05D002136 ORTHO05D002145 1.3e-10 70.1 60 60.0
Zm00001eb177690 Zea mays HOM05D002136 ORTHO05D002145 2.3e-10 69.3 60 63.3
CSS0014039 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 3.9e-10 68.6 53 64.2
CAN.G551.37 Capsicum annuum HOM05D002136 ORTHO05D002145 3.9e-10 68.6 114 42.1
C02p13700 Brassica napus HOM05D002136 ORTHO05D002145 6.7e-10 67.8 59 57.6
BolC2t07489H Brassica oleracea HOM05D002136 ORTHO05D002145 6.7e-10 67.8 59 57.6
SEGI_08782 Sequoiadendron giganteum HOM05D002136 ORTHO05D002145 8.7e-10 67.4 60 56.7
Sed0006701 Sechium edule HOM05D002136 ORTHO05D002145 1.5e-09 66.6 61 55.7
SEGI_31990 Sequoiadendron giganteum HOM05D002136 ORTHO05D002145 5.6e-09 64.7 60 56.7
Cpa.g.sc46.142 Carica papaya HOM05D002136 ORTHO05D002145 2.1e-08 62.8 96 40.6
Nitab4.5_0006527g0020 Nicotiana tabacum HOM05D002136 ORTHO05D002145 2.1e-08 62.8 91 40.7
CsaV3_2G003680 Cucumis sativus L. HOM05D002136 ORTHO05D002145 2.8e-08 62.4 64 51.6
Dinv41387 Davidia involucrata HOM05D002136 ORTHO05D002145 4.8e-08 61.6 42 69.0
MELO3C004426.2 Cucumis melo HOM05D002136 ORTHO05D002145 8.1e-08 60.8 64 50.0
PSO782G3912 Papaver somniferum HOM05D002136 ORTHO05D002145 8.1e-08 60.8 59 57.6
HPP92_003753 Vanilla planifolia HOM05D002136 ORTHO05D002145 8.1e-08 60.8 56 57.1
Lj7P457T37 Lonicera japonica HOM05D002136 ORTHO05D002145 1.4e-07 60.1 82 41.5
Eucgr.C00355 Eucalyptus grandis HOM05D002136 ORTHO05D002145 2.4e-07 59.3 60 53.3
FAN19G2520 Fragaria x ananassa HOM05D002136 ORTHO05D002145 3.1e-07 58.9 33 78.8
FAN23G0309 Fragaria x ananassa HOM05D002136 ORTHO05D002145 6.9e-07 57.8 33 75.8
FAN28G0826 Fragaria x ananassa HOM05D002136 ORTHO05D002145 6.9e-07 57.8 33 75.8
Prupe.3G132900 Prunus persica HOM05D002136 ORTHO05D002145 6.9e-07 57.8 56 55.4
FAN09G2941 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.2e-06 57.0 56 55.4
MD09G1242900 Malus domestica HOM05D002136 ORTHO05D002145 1.2e-06 57.0 59 52.5
FvH4_6g26620 Fragaria vesca HOM05D002136 ORTHO05D002145 1.5e-06 56.6 56 55.4
FAN02G1860 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.5e-06 56.6 56 55.4
FAN14G1013 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.5e-06 56.6 56 55.4
FAN26G0651 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.5e-06 56.6 33 75.8
RcHm_v2.0_Chr2g0127351 Rosa chinensis HOM05D002136 ORTHO05D002145 1.5e-06 56.6 56 55.4
SalBow7G2611 Salvia bowleyana HOM05D002136 ORTHO05D002145 1.5e-06 56.6 60 51.7
CiPaw.03G180600 Carya illinoinensis HOM05D002136 ORTHO05D002145 2.6e-06 55.8 59 52.5
PGR142G3530 Punica granatum HOM05D002136 ORTHO05D002145 2.6e-06 55.8 107 36.4
Nn1g06431 Nelumbo nucifera HOM05D002136 ORTHO05D002145 5.8e-06 54.7 60 48.3
arahy.Tifrunner.gnm1.ann1.M4PPZI Arachis hypogaea HOM05D002136 ORTHO05D002145 7.6e-06 54.3 63 47.6
AagrBONN_evm.TU.Sc2ySwM_362.1448 Anthoceros agrestis HOM05D002136 ORTHO05D002145 1.0e-05 53.9 110 31.8


User provided reference genes

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