Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 4.3e-195 684.5 349 100.0
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 5.8e-99 365.2 400 52.5
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 1.3e-98 364.0 391 52.4
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 3.9e-95 352.4 394 51.8
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 1.6e-93 347.1 330 57.0
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 4.7e-93 345.5 333 58.0
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 8.1e-93 344.7 336 56.2
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 1.1e-92 344.4 378 52.4
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 1.8e-92 343.6 396 51.3
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 4.0e-92 342.4 391 51.7
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 7.6e-91 338.2 329 56.5
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 9.9e-91 337.8 354 53.1
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 1.7e-90 337.0 374 51.9
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 1.7e-90 337.0 308 57.1
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 2.9e-90 336.3 324 55.2
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 2.9e-90 336.3 327 55.7
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 3.8e-90 335.9 368 52.7
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 9.2e-89 331.3 318 57.5
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 2.7e-88 329.7 390 50.3
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 4.6e-88 328.9 390 46.9
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 7.8e-88 328.2 346 52.6
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 1.0e-87 327.8 332 55.1
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 1.3e-87 327.4 322 53.1
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.3e-87 327.4 324 54.6
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 3.0e-87 326.2 368 51.1
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 6.6e-87 325.1 339 51.0
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 8.6e-87 324.7 327 54.4
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.5e-86 323.9 310 57.1
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 1.5e-86 323.9 294 59.9
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 1.2e-85 320.9 366 49.2
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 2.8e-85 319.7 329 54.1
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 6.2e-85 318.5 322 51.6
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 1.8e-84 317.0 331 53.5
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 5.2e-84 315.5 346 50.3
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 6.9e-84 315.1 391 47.8
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 1.2e-83 314.3 314 52.5
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 1.2e-83 314.3 314 52.5
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 1.5e-83 313.9 313 54.0
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 1.5e-83 313.9 390 48.5
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 1.5e-83 313.9 392 46.9
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 2.0e-83 313.5 321 53.3
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 2.0e-83 313.5 336 52.1
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 2.0e-83 313.5 397 46.6
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 3.4e-83 312.8 394 46.4
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 4.4e-83 312.4 397 46.3
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 7.6e-83 311.6 331 52.6
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 1.7e-82 310.5 321 53.3
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 3.8e-82 309.3 330 50.9
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 4.9e-82 308.9 359 51.5
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 4.2e-81 305.8 331 51.7
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 9.3e-81 304.7 293 56.7
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 1.2e-80 304.3 339 50.1
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 2.1e-80 303.5 311 52.1
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 2.7e-80 303.1 331 51.4
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 6.0e-80 302.0 397 46.1
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 1.0e-79 301.2 355 47.9
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 1.7e-79 300.4 335 49.9
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 3.0e-79 299.7 231 65.8
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 3.9e-79 299.3 382 45.5
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 5.1e-79 298.9 257 60.7
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.1e-78 297.7 419 43.2
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 4.3e-78 295.8 330 50.3
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 9.6e-78 294.7 331 49.2
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.6e-77 293.9 350 47.1
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 2.1e-77 293.5 348 48.6
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 2.8e-77 293.1 383 46.0
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 8.1e-77 291.6 288 56.2
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 1.8e-76 290.4 295 52.9
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 2.4e-76 290.0 352 49.4
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 4.0e-76 289.3 337 49.3
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 4.0e-76 289.3 293 54.6
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 6.9e-76 288.5 339 49.3
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.5e-75 287.3 291 54.3
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 2.0e-75 287.0 337 49.0
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 5.8e-75 285.4 326 48.8
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 5.8e-75 285.4 324 50.3
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 7.6e-75 285.0 331 48.9
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 7.6e-75 285.0 395 41.5
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 7.6e-75 285.0 307 50.8
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 9.9e-75 284.6 315 52.1
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 1.3e-74 284.3 312 50.3
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 1.3e-74 284.3 256 57.0
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 2.2e-74 283.5 322 49.1
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 4.9e-74 282.3 334 47.3
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 1.1e-73 281.2 299 50.8
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 2.4e-73 280.0 311 52.1
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 2.7e-72 276.6 357 45.4
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.3e-71 274.2 222 60.8
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 1.8e-71 273.9 342 46.2
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 8.7e-71 271.6 365 44.9
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 1.6e-69 267.3 355 45.1
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 2.8e-69 266.5 357 44.8
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 1.4e-65 254.2 326 45.4
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 2.5e-62 243.4 191 66.0
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 6.2e-61 238.8 330 43.6
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 1.4e-60 237.7 199 58.3
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 1.8e-60 237.3 320 45.9
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 6.9e-60 235.3 199 58.3
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 7.6e-59 231.9 327 40.1
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 7.1e-57 225.3 343 39.1
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 2.2e-53 213.8 297 40.7
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 2.8e-53 213.4 171 62.6
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 1.0e-47 194.9 136 68.4
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 1.5e-46 191.0 231 47.2
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 1.5e-46 191.0 149 65.1
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 6.3e-45 185.7 195 49.2
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 2.0e-38 164.1 222 41.0
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 9.7e-38 161.8 194 47.4
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 1.8e-36 157.5 263 37.3
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.6e-35 153.7 241 36.1
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 3.2e-33 146.7 251 37.5
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 4.2e-33 146.4 193 42.5
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 1.2e-32 144.8 146 49.3
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 1.6e-32 144.4 142 50.0
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 1.5e-30 137.9 146 47.9
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 2.6e-30 137.1 142 48.6
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 2.6e-30 137.1 217 35.5
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.7e-29 133.3 169 43.8
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.4e-28 130.6 139 47.5
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 4.1e-28 129.8 194 41.8
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 5.3e-28 129.4 215 40.0
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 7.0e-28 129.0 136 46.3
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 9.1e-28 128.6 165 43.0
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 6.5e-18 95.9 204 29.4
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 1.2e-06 58.5 56 57.1
Actinidia09700 Actinidia chinensis HOM05D006259 ORTHO05D053169 1.2e-06 58.5 59 55.9


User provided reference genes

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