Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 6.9e-92 340.5 158 100.0
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 1.0e-66 256.9 158 76.6
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.3e-66 256.5 152 77.6
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 5.0e-66 254.6 155 76.1
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 1.9e-65 252.7 153 73.9
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 3.2e-65 251.9 158 72.2
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 5.5e-65 251.1 158 74.7
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 9.4e-65 250.4 158 70.9
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 9.4e-65 250.4 153 73.9
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 1.6e-64 249.6 152 77.0
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.1e-64 249.2 158 71.5
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 3.6e-64 248.4 156 71.8
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.0e-63 246.9 155 70.3
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 2.3e-63 245.7 152 73.7
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 2.3e-63 245.7 158 70.9
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 8.8e-63 243.8 153 72.5
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 2.0e-62 242.7 158 71.5
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 2.2e-61 239.2 150 75.3
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 2.8e-61 238.8 152 70.4
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 2.8e-61 238.8 152 69.7
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 4.1e-60 235.0 158 67.1
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 5.3e-60 234.6 152 68.4
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 5.3e-60 234.6 157 69.4
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 9.1e-60 233.8 152 70.4
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.2e-59 233.4 153 68.0
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.6e-59 232.3 156 67.3
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.6e-59 232.3 156 67.3
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 1.7e-58 229.6 157 68.8
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 6.5e-58 227.6 152 67.8
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 1.9e-57 226.1 158 65.2
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 9.4e-57 223.8 158 63.3
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 6.1e-56 221.1 155 61.3
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 6.7e-55 217.6 151 64.9
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.1e-54 216.9 152 65.8
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 1.5e-54 216.5 151 66.2
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 2.0e-54 216.1 152 65.8
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 2.0e-54 216.1 152 63.8
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 2.6e-54 215.7 159 61.0
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 4.4e-54 214.9 152 63.8
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 5.7e-54 214.5 153 64.7
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 7.5e-54 214.2 152 64.5
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.7e-53 213.0 152 64.5
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 6.3e-53 211.1 151 64.9
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 2.4e-52 209.1 153 60.8
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 2.4e-52 209.1 151 61.6
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 5.3e-52 208.0 152 61.8
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 1.2e-51 206.8 159 58.5
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 1.6e-51 206.5 153 62.1
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 1.6e-51 206.5 153 62.1
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 2.0e-51 206.1 154 61.0
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 2.0e-51 206.1 154 61.0
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 3.5e-51 205.3 154 60.4
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 3.5e-51 205.3 154 60.4
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 3.5e-51 205.3 154 61.0
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 5.9e-51 204.5 152 58.6
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 2.2e-50 202.6 153 61.4
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.2e-49 198.7 156 57.1
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.2e-49 198.7 156 57.1
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 9.4e-49 197.2 153 61.4
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 2.1e-48 196.1 157 54.8
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 2.7e-48 195.7 120 75.0
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 3.6e-48 195.3 153 58.8
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 1.4e-47 193.4 153 56.9
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 2.0e-46 189.5 151 58.9
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 2.6e-46 189.1 151 55.6
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 3.4e-46 188.7 129 66.7
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 1.3e-45 186.8 154 55.2
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 1.3e-45 186.8 156 57.1
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 1.7e-45 186.4 153 56.2
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 1.7e-45 186.4 158 55.7
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 2.2e-45 186.0 114 72.8
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 2.4e-44 182.6 152 53.9
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 4.1e-44 181.8 154 55.2
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 9.1e-44 180.6 152 53.3
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 5.9e-43 177.9 155 52.9
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 1.0e-42 177.2 155 56.8
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 3.6e-40 168.7 103 75.7
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 4.4e-38 161.8 122 60.7
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.4e-36 156.8 127 60.6
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 8.0e-32 141.0 145 45.5
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 6.6e-26 121.3 102 65.7
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 1.3e-21 107.1 150 37.3
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 6.4e-21 104.8 150 39.3
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 1.4e-12 77.0 56 66.1
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 1.9e-12 76.6 58 58.6
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 1.6e-11 73.6 65 50.8
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 6.2e-08 61.6 83 36.1
Mapoly0047s0088 Marchantia polymorpha HOM05D031660 ORTHO05D009870 4.4e-06 55.5 82 34.1


User provided reference genes

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