Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 9.1e-150 534.3 442 100.0
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.8e-58 229.6 419 50.4
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 4.3e-51 206.5 195 56.9
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 3.0e-44 183.7 264 47.7
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 3.9e-44 183.3 202 53.5
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 5.7e-43 179.5 231 48.9
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 7.4e-43 179.1 291 45.0
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 2.2e-42 177.6 209 51.7
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 2.2e-42 177.6 209 51.7
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 8.2e-42 175.6 198 52.5
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.1e-41 175.3 207 52.2
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.1e-41 175.3 248 45.6
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.4e-41 174.9 282 43.6
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.4e-41 174.1 207 51.7
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 3.1e-41 173.7 230 47.0
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 7.0e-41 172.6 294 40.8
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 7.0e-41 172.6 281 44.1
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 7.0e-41 172.6 215 49.3
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 1.2e-40 171.8 290 44.1
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.5e-40 171.4 210 49.0
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 2.6e-40 170.6 259 45.2
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.5e-40 170.2 257 44.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 1.3e-39 168.3 231 44.6
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.7e-39 167.9 254 44.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.8e-39 166.8 279 42.7
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 6.5e-39 166.0 211 48.8
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.5e-39 165.6 214 46.7
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 8.5e-39 165.6 204 51.0
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.1e-38 165.2 209 48.3
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.9e-38 164.5 200 50.5
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.9e-38 164.5 206 49.0
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.5e-38 164.1 285 43.9
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.2e-38 163.3 254 45.3
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 4.2e-38 163.3 214 48.1
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.2e-38 163.3 301 39.9
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 5.5e-38 162.9 299 43.8
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.5e-38 162.9 205 49.3
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.5e-38 162.9 267 44.9
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.2e-37 161.8 249 45.4
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 6.1e-37 159.5 300 40.0
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 8.0e-37 159.1 307 40.1
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.0e-36 158.7 220 48.6
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-36 158.3 207 45.4
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.4e-36 158.3 206 48.5
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.3e-36 157.5 210 45.7
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 6.7e-36 156.0 302 42.4
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 8.8e-36 155.6 351 35.9
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.5e-35 154.8 226 42.9
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.4e-35 153.3 194 49.0
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 4.4e-35 153.3 216 46.3
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 5.7e-35 152.9 208 56.2
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 7.5e-35 152.5 198 46.0
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 7.5e-35 152.5 217 46.1
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.7e-34 151.4 248 45.2
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.7e-34 151.4 287 44.9
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.2e-34 151.0 216 46.8
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 3.7e-34 150.2 199 47.7
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 3.7e-34 150.2 284 48.6
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.1e-33 148.7 250 42.4
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 2.4e-33 147.5 281 40.9
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 3.1e-33 147.1 199 46.2
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 3.1e-33 147.1 212 54.2
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 5.3e-33 146.4 341 35.2
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 5.3e-33 146.4 215 46.0
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 5.3e-33 146.4 232 43.5
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 1.2e-32 145.2 315 43.2
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.2e-32 145.2 215 48.8
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 3.5e-32 143.7 296 36.5
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 4.5e-32 143.3 209 48.8
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 4.5e-32 143.3 269 39.8
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 7.7e-32 142.5 216 43.1
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 7.7e-32 142.5 257 40.9
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.0e-31 142.1 204 46.1
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.7e-31 141.4 255 40.0
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 2.2e-31 141.0 238 41.2
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 3.8e-31 140.2 261 39.5
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 5.0e-31 139.8 220 41.8
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 5.0e-31 139.8 301 49.5
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 6.5e-31 139.4 290 37.2
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 8.5e-31 139.0 202 52.5
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 7.2e-30 136.0 250 37.6
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.6e-29 134.8 238 39.1
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 2.7e-29 134.0 280 36.1
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 3.6e-29 133.7 254 40.2
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 4.7e-29 133.3 199 48.7
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-28 131.7 214 42.5
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.3e-28 131.0 213 42.3
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 2.3e-28 131.0 256 43.4
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 3.0e-28 130.6 254 38.6
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 4.0e-28 130.2 271 37.6
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 4.0e-28 130.2 210 59.0
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 5.2e-28 129.8 233 39.9
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 5.2e-28 129.8 205 44.4
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 6.8e-28 129.4 193 44.6
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 6.8e-28 129.4 266 39.8
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 1.5e-27 128.3 295 36.9
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 2.6e-27 127.5 216 41.7
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 4.4e-27 126.7 209 41.1
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 5.7e-27 126.3 208 39.9
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 7.5e-27 125.9 220 49.1
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.3e-26 125.2 256 40.6
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.7e-26 124.8 265 40.4
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 6.3e-26 122.9 283 42.0
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 8.3e-26 122.5 257 37.7
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 8.3e-26 122.5 206 38.8
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-25 122.1 212 42.9
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.1e-25 122.1 254 43.7
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.8e-25 121.3 214 39.7
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.8e-25 121.3 292 36.3
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.6e-24 118.2 151 49.0
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 4.5e-24 116.7 217 38.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.5e-24 116.7 280 36.4
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.0e-23 115.5 269 35.7
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.7e-23 114.8 212 57.1
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 6.5e-23 112.8 292 51.0
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.1e-22 112.1 213 38.0
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.1e-22 112.1 267 35.6
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.5e-22 111.7 212 56.6
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 3.2e-22 110.5 240 36.2
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 4.2e-22 110.2 246 37.8
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 5.5e-22 109.8 208 45.2
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.6e-21 108.2 289 36.0
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 8.0e-21 105.9 171 41.5
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.4e-20 105.1 211 53.1
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.4e-20 105.1 211 53.1
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.3e-20 104.4 277 40.1
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 5.2e-20 103.2 211 59.7
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.0e-19 101.3 195 39.0
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.6e-19 100.9 270 32.6
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 4.4e-19 100.1 211 37.0
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.7e-19 99.8 270 32.2
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.7e-18 98.2 278 32.7
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.7e-18 98.2 262 34.7
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.7e-18 97.1 285 31.2
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 3.7e-18 97.1 286 31.1
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.4e-17 95.1 197 37.1
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 1.8e-17 94.7 285 32.6
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 9.1e-17 92.4 182 34.6
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 3.5e-16 90.5 271 32.8
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 7.7e-16 89.4 248 33.1
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.9e-15 87.4 229 31.9
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 2.9e-15 87.4 283 30.4
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 3.8e-15 87.0 203 35.5
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 6.6e-15 86.3 254 33.1
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.1e-13 81.3 259 34.7
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 4.7e-13 80.1 71 56.3
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 6.1e-13 79.7 124 43.5
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 6.1e-13 79.7 232 29.7
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.8e-12 78.2 50 72.0
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.8e-12 78.2 210 32.4
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 2.3e-12 77.8 71 54.9
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 2.3e-12 77.8 71 54.9
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.3e-12 77.8 246 31.3
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 5.7e-11 73.2 50 76.0
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 1.7e-10 71.6 90 51.1
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.1e-09 68.9 114 43.9
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.0e-08 64.7 184 28.3


User provided reference genes

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