Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 0.0e+00 1259.6 634 100.0
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 7.7e-243 844.0 638 68.5
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 6.8e-207 724.5 625 61.0
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 7.0e-204 714.5 640 59.7
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 6.8e-199 698.0 638 57.8
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 2.9e-197 692.6 563 62.3
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 3.7e-197 692.2 648 57.3
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 1.0e-194 684.1 601 59.9
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 2.5e-193 679.5 608 58.2
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 1.6e-192 676.8 619 57.4
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 3.1e-191 672.5 626 57.5
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 6.4e-189 664.8 623 56.7
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 6.0e-187 658.3 626 54.6
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 2.3e-186 656.4 600 56.7
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 6.6e-186 654.8 614 55.2
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 5.6e-185 651.7 724 50.7
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 7.3e-185 651.4 624 54.2
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 4.8e-184 648.7 600 56.0
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 6.2e-184 648.3 591 54.7
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 5.3e-183 645.2 626 54.5
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 5.3e-183 645.2 628 55.3
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 2.0e-182 643.3 638 54.5
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 2.0e-182 643.3 623 53.9
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 3.4e-182 642.5 722 50.0
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 4.4e-182 642.1 625 54.1
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 6.4e-181 638.3 624 53.0
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 2.4e-180 636.3 588 58.2
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 2.7e-179 632.9 633 53.2
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 4.6e-179 632.1 625 52.5
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 5.1e-178 628.6 610 52.3
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 6.6e-178 628.2 599 54.8
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 1.9e-177 626.7 631 53.4
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 3.3e-177 625.9 627 54.2
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 6.2e-176 621.7 636 51.3
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 9.0e-175 617.8 602 52.0
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 2.0e-174 616.7 658 51.7
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 2.9e-173 612.8 601 52.2
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 2.4e-172 609.8 612 53.9
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 9.3e-172 607.8 586 53.6
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 2.7e-171 606.3 607 52.4
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 3.5e-171 605.9 621 52.8
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 2.3e-170 603.2 638 50.3
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 6.7e-170 601.7 622 51.6
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 4.3e-169 599.0 627 52.2
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 2.1e-168 596.7 614 51.8
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 3.7e-168 595.9 580 54.5
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 8.1e-168 594.7 591 53.8
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.1e-167 594.3 580 54.1
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 1.1e-167 594.3 620 51.1
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 1.4e-167 594.0 659 49.9
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 1.5e-166 590.5 630 49.0
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 7.6e-166 588.2 623 52.5
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 7.6e-166 588.2 560 55.7
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 7.6e-166 588.2 635 49.8
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 3.2e-164 582.8 456 62.9
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 1.6e-163 580.5 637 50.1
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 2.7e-163 579.7 618 52.3
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 6.0e-163 578.6 661 50.1
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 1.3e-162 577.4 588 52.0
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 3.9e-162 575.9 617 48.6
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 8.7e-162 574.7 637 48.8
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 1.1e-161 574.3 630 48.7
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 5.7e-161 572.0 632 49.2
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 9.6e-161 571.2 627 48.3
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 2.8e-160 569.7 620 49.0
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 1.4e-159 567.4 636 48.4
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 1.4e-159 567.4 597 49.2
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 3.1e-159 566.2 640 48.6
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 5.3e-159 565.5 638 48.6
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 1.5e-158 563.9 638 48.3
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 4.5e-158 562.4 638 48.3
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 4.5e-158 562.4 576 51.7
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 1.3e-157 560.8 525 55.0
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 1.8e-154 550.4 657 47.8
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 1.3e-152 544.3 654 48.0
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 7.7e-150 535.0 720 42.9
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 7.2e-148 528.5 581 49.1
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 1.2e-147 527.7 632 47.5
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 3.9e-146 522.7 430 62.8
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 6.7e-146 521.9 626 48.4
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 6.3e-136 488.8 599 45.7
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 4.5e-134 482.6 644 45.0
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 5.9e-134 482.3 480 52.1
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 7.4e-129 465.3 608 47.4
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 8.2e-128 461.8 428 54.2
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 4.1e-127 459.5 614 44.1
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 5.9e-126 455.7 465 50.3
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 1.0e-125 454.9 421 56.3
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 2.5e-124 450.3 615 44.2
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 4.2e-124 449.5 430 53.3
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 6.1e-123 445.7 495 48.5
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 5.7e-121 439.1 466 52.8
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 5.7e-121 439.1 438 53.9
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.3e-117 427.9 658 39.2
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 4.7e-115 419.5 397 55.7
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 2.2e-112 410.6 388 52.6
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 6.3e-112 409.1 498 49.0
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 7.2e-108 395.6 401 53.1
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 6.1e-107 392.5 579 40.6
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 2.4e-103 380.6 432 46.8
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 9.2e-103 378.6 578 39.1
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 4.0e-74 283.5 315 50.5
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 3.3e-68 263.8 586 29.9
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 3.3e-60 237.3 233 54.1
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 6.7e-53 213.0 219 50.7
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 8.1e-51 206.1 600 28.7
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 1.1e-47 195.7 209 45.9
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 2.7e-46 191.0 291 39.5
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.5e-36 158.7 305 36.1
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 7.7e-33 146.4 204 36.3
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 3.8e-32 144.1 259 34.0
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 6.7e-29 133.3 166 44.6
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 4.1e-26 124.0 143 53.1
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 2.8e-19 101.3 389 25.2
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 9.4e-15 86.3 182 35.2
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 3.6e-14 84.3 185 32.4
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 1.4e-13 82.4 67 62.7
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 3.0e-13 81.3 96 50.0
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 5.2e-13 80.5 102 43.1
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 2.0e-12 78.6 72 54.2
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 3.3e-12 77.8 59 62.7
MBI05_g22668_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 3.1e-10 71.2 63 54.0
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 4.1e-10 70.9 49 65.3


User provided reference genes

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