Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06333 Nelumbo nucifera HOM05D003560 ORTHO05D004500 1.1e-43 179.5 89 100.0
Nn2g14025 Nelumbo nucifera HOM05D003560 ORTHO05D004500 8.2e-34 146.7 82 90.2
Nn8g40053 Nelumbo nucifera HOM05D003560 ORTHO05D004500 5.2e-28 127.5 82 76.8
TAR636G2626 Trochodendron aralioides HOM05D003560 ORTHO05D004500 1.1e-25 119.8 82 72.0
TAR625G0571 Trochodendron aralioides HOM05D003560 ORTHO05D004500 3.1e-25 118.2 82 72.0
Aqoxy7G03346 Aquilegia oxysepala HOM05D003560 ORTHO05D004500 9.4e-22 106.7 82 65.9
Dinv41343 Davidia involucrata HOM05D003560 ORTHO05D004500 2.1e-21 105.5 82 62.2
Prupe.1G102400 Prunus persica HOM05D003560 ORTHO05D004500 1.7e-18 95.9 83 59.0
Dinv42820 Davidia involucrata HOM05D003560 ORTHO05D004500 2.2e-18 95.5 82 57.3
Dinv43280 Davidia involucrata HOM05D003560 ORTHO05D004500 2.2e-18 95.5 82 57.3
Cfa020786 Carpinus fangiana HOM05D003560 ORTHO05D004500 6.3e-18 94.0 83 61.4
Atru.chr7.14 Acer truncatum HOM05D003560 ORTHO05D004500 8.3e-18 93.6 83 61.4
Sabra18G0088600 Salix brachista HOM05D003560 ORTHO05D004500 1.4e-17 92.8 83 59.0
Haze_19142 Corylus avellana HOM05D003560 ORTHO05D004500 1.8e-17 92.4 83 61.4
Potri.018G103000 Populus trichocarpa HOM05D003560 ORTHO05D004500 3.1e-17 91.7 83 59.0
Ciclev10007284m.g Citrus clementina HOM05D003560 ORTHO05D004500 7.0e-17 90.5 83 59.0
MBI14_g08698_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 1.2e-16 89.7 82 58.5
MBI14_g31376_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 1.2e-16 89.7 82 58.5
CSS0046771 Camellia sinensis var. sinensis HOM05D003560 ORTHO05D004500 4.5e-16 87.8 82 54.9
RcHm_v2.0_Chr4g0405611 Rosa chinensis HOM05D003560 ORTHO05D004500 4.5e-16 87.8 83 55.4
MD13G1257100 Malus domestica HOM05D003560 ORTHO05D004500 5.9e-16 87.4 83 55.4
QL02p094176 Quercus lobata HOM05D003560 ORTHO05D004500 7.7e-16 87.0 83 57.8
PSO063G7271 Papaver somniferum HOM05D003560 ORTHO05D004500 1.3e-15 86.3 83 57.8
ATR0749G018 Amborella trichopoda HOM05D003560 ORTHO05D004500 2.9e-15 85.1 84 56.0
FvH4_4g10150 Fragaria vesca HOM05D003560 ORTHO05D004500 5.0e-15 84.3 83 56.6
FAN12G4167 Fragaria x ananassa HOM05D003560 ORTHO05D004500 5.0e-15 84.3 83 56.6
Actinidia20936 Actinidia chinensis HOM05D003560 ORTHO05D004500 8.6e-15 83.6 82 53.7
Cpa.g.sc199.20 Carica papaya HOM05D003560 ORTHO05D004500 8.6e-15 83.6 83 55.4
FAN12G2950 Fragaria x ananassa HOM05D003560 ORTHO05D004500 1.1e-14 83.2 83 56.6
PSO782G3416 Papaver somniferum HOM05D003560 ORTHO05D004500 1.5e-14 82.8 83 56.6
CiPaw.16G106900 Carya illinoinensis HOM05D003560 ORTHO05D004500 3.3e-14 81.6 83 54.2
Potri.006G180800 Populus trichocarpa HOM05D003560 ORTHO05D004500 3.3e-14 81.6 83 54.2
Sed0017470 Sechium edule HOM05D003560 ORTHO05D004500 3.3e-14 81.6 82 57.3
FAN07G0247 Fragaria x ananassa HOM05D003560 ORTHO05D004500 9.5e-14 80.1 83 55.4
FAN22G1868 Fragaria x ananassa HOM05D003560 ORTHO05D004500 9.5e-14 80.1 83 55.4
FAN17G2275 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.8e-13 78.6 83 54.2
Lj4g0007617 Lotus japonicus HOM05D003560 ORTHO05D004500 3.6e-13 78.2 83 54.2
MD04G1049500 Malus domestica HOM05D003560 ORTHO05D004500 4.7e-13 77.8 83 53.0
Hma1.2p1_0222F.1_g093876 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 8.0e-13 77.0 82 52.4
Hma1.2p1_0222F.1_g093890 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 8.0e-13 77.0 82 52.4
Hma1.2p1_0222F.1_g093910 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 8.0e-13 77.0 82 52.4
Hma1.2p1_1084F.1_g255280 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 8.0e-13 77.0 82 52.4
Glyma.02G206500 Glycine max HOM05D003560 ORTHO05D004500 1.8e-12 75.9 83 54.2
Manes.06G031700 Manihot esculenta HOM05D003560 ORTHO05D004500 1.8e-12 75.9 83 51.8
CsaV3_2G007690 Cucumis sativus L. HOM05D003560 ORTHO05D004500 3.0e-12 75.1 82 53.7
CiPaw.15G164500 Carya illinoinensis HOM05D003560 ORTHO05D004500 4.0e-12 74.7 83 53.0
Medtr4g130370 Medicago truncatula HOM05D003560 ORTHO05D004500 5.2e-12 74.3 85 51.8
Thecc.09G153600 Theobroma cacao HOM05D003560 ORTHO05D004500 5.2e-12 74.3 83 53.0
COL.COLO4_05033 Corchorus olitorius HOM05D003560 ORTHO05D004500 6.8e-12 73.9 83 53.0
arahy.Tifrunner.gnm1.ann1.752C0V Arachis hypogaea HOM05D003560 ORTHO05D004500 8.9e-12 73.6 83 50.6
arahy.Tifrunner.gnm1.ann1.IP23DV Arachis hypogaea HOM05D003560 ORTHO05D004500 8.9e-12 73.6 83 50.6
Sed0019076 Sechium edule HOM05D003560 ORTHO05D004500 1.2e-11 73.2 82 52.4
MELO3C004116.2 Cucumis melo HOM05D003560 ORTHO05D004500 1.5e-11 72.8 82 53.7
TPR.G24844 Trifolium pratense HOM05D003560 ORTHO05D004500 1.5e-11 72.8 80 50.0
TPR.G131 Trifolium pratense HOM05D003560 ORTHO05D004500 2.0e-11 72.4 80 51.2
ClCG02G014310 Citrullus lanatus HOM05D003560 ORTHO05D004500 3.4e-11 71.6 82 52.4
Eucgr.C00241 Eucalyptus grandis HOM05D003560 ORTHO05D004500 3.4e-11 71.6 84 48.8
Psat7g006640 Pisum sativum HOM05D003560 ORTHO05D004500 4.4e-11 71.2 83 48.2
Cc06_g14510 Coffea canephora HOM05D003560 ORTHO05D004500 5.7e-11 70.9 82 46.3
Duzib168G0378 Durio zibethinus HOM05D003560 ORTHO05D004500 7.5e-11 70.5 83 49.4
Phvul.003G153800 Phaseolus vulgaris HOM05D003560 ORTHO05D004500 7.5e-11 70.5 83 54.2
Ca_21152_v3 Cicer arietinum L. HOM05D003560 ORTHO05D004500 9.8e-11 70.1 83 47.0
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 1.7e-10 69.3 83 48.2
Sopen07g002100 Solanum pennellii HOM05D003560 ORTHO05D004500 1.7e-10 69.3 68 51.5
Glyma.17G071400 Glycine max HOM05D003560 ORTHO05D004500 2.2e-10 68.9 85 51.8
Gohir.D05G008900 Gossypium hirsutum HOM05D003560 ORTHO05D004500 2.2e-10 68.9 84 50.0
Gorai.009G009100 Gossypium raimondii HOM05D003560 ORTHO05D004500 2.2e-10 68.9 84 50.0
Lalb_Chr12g0198821 Lupinus albus HOM05D003560 ORTHO05D004500 2.2e-10 68.9 83 50.6
TWI34G0709 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 2.8e-10 68.6 80 51.2
CAN.G1190.4 Capsicum annuum HOM05D003560 ORTHO05D004500 3.7e-10 68.2 64 53.1
Gohir.A05G008100 Gossypium hirsutum HOM05D003560 ORTHO05D004500 4.9e-10 67.8 84 48.8
PGSC0003DMG400011153 Solanum tuberosum HOM05D003560 ORTHO05D004500 6.3e-10 67.4 68 50.0
Duzib187G1514 Durio zibethinus HOM05D003560 ORTHO05D004500 1.1e-09 66.6 82 50.0
VMungo1215G0464 Vigna mungo HOM05D003560 ORTHO05D004500 1.4e-09 66.2 83 51.8
Lj9A721G57 Lonicera japonica HOM05D003560 ORTHO05D004500 2.4e-09 65.5 81 49.4
Solyc07g005970.3 Solanum lycopersicum HOM05D003560 ORTHO05D004500 2.4e-09 65.5 68 50.0
Duzib150G1559 Durio zibethinus HOM05D003560 ORTHO05D004500 3.1e-09 65.1 82 47.6
SalBow1G5562 Salvia bowleyana HOM05D003560 ORTHO05D004500 4.1e-09 64.7 82 48.8
TWI32G0440 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 1.0e-07 60.1 79 49.4
HPP92_021904 Vanilla planifolia HOM05D003560 ORTHO05D004500 1.7e-07 59.3 81 42.0
SEGI_31223 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 2.3e-07 58.9 88 43.2
Lalb_Chr13g0300691 Lupinus albus HOM05D003560 ORTHO05D004500 6.6e-07 57.4 73 50.7
THA.LOC104815517 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 6.6e-07 57.4 83 44.6
CARHR238630 Cardamine hirsuta HOM05D003560 ORTHO05D004500 1.5e-06 56.2 83 47.0
AT4G30790 Arabidopsis thaliana HOM05D003560 ORTHO05D004500 3.3e-06 55.1 83 47.0
MSTRG.19664 Avicennia marina HOM05D003560 ORTHO05D004500 4.3e-06 54.7 79 40.5
Nitab4.5_0006744g0010 Nicotiana tabacum HOM05D003560 ORTHO05D004500 4.3e-06 54.7 68 45.6
THA.LOC104803549 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 4.3e-06 54.7 84 42.9
Carub.0007s0981 Capsella rubella HOM05D003560 ORTHO05D004500 5.6e-06 54.3 83 43.4
Thhalv10024256m.g Eutrema salsugineum HOM05D003560 ORTHO05D004500 5.6e-06 54.3 83 44.6


User provided reference genes

Program Settings