Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06270 Nelumbo nucifera HOM05D001582 ORTHO05D001598 4.1e-68 261.2 122 100.0
Nn3g17061 Nelumbo nucifera HOM05D001582 ORTHO05D001598 7.9e-19 97.4 77 64.9
TAR628G1543 Trochodendron aralioides HOM05D001582 ORTHO05D001598 1.3e-16 90.1 89 56.2
COL.COLO4_16921 Corchorus olitorius HOM05D001582 ORTHO05D001598 2.1e-16 89.4 92 53.3
Thecc.03G311300 Theobroma cacao HOM05D001582 ORTHO05D001598 4.8e-16 88.2 77 59.7
Dinv07121 Davidia involucrata HOM05D001582 ORTHO05D001598 6.2e-16 87.8 84 54.8
Duzib068G1135 Durio zibethinus HOM05D001582 ORTHO05D001598 8.1e-16 87.4 77 58.4
Duzib205G0094 Durio zibethinus HOM05D001582 ORTHO05D001598 8.1e-16 87.4 77 59.7
arahy.Tifrunner.gnm1.ann1.11LC84 Arachis hypogaea HOM05D001582 ORTHO05D001598 1.8e-15 86.3 103 46.6
THA.LOC104815571 Tarenaya hassleriana HOM05D001582 ORTHO05D001598 2.4e-15 85.9 84 53.6
Psat4g141720 Pisum sativum HOM05D001582 ORTHO05D001598 4.0e-15 85.1 77 57.1
Atru.chr4.904 Acer truncatum HOM05D001582 ORTHO05D001598 5.3e-15 84.7 77 57.1
Ca_24117_v3 Cicer arietinum L. HOM05D001582 ORTHO05D001598 5.3e-15 84.7 77 57.1
Gohir.A12G205500 Gossypium hirsutum HOM05D001582 ORTHO05D001598 5.3e-15 84.7 77 58.4
Gohir.D12G207900 Gossypium hirsutum HOM05D001582 ORTHO05D001598 5.3e-15 84.7 77 58.4
Gorai.008G223400 Gossypium raimondii HOM05D001582 ORTHO05D001598 5.3e-15 84.7 77 58.4
Dinv24365 Davidia involucrata HOM05D001582 ORTHO05D001598 6.9e-15 84.3 77 57.1
Migut.H00703 Erythranthe guttata HOM05D001582 ORTHO05D001598 6.9e-15 84.3 77 55.8
Aqoxy7G03556 Aquilegia oxysepala HOM05D001582 ORTHO05D001598 9.0e-15 84.0 84 51.2
arahy.Tifrunner.gnm1.ann1.TIS67U Arachis hypogaea HOM05D001582 ORTHO05D001598 9.0e-15 84.0 77 57.1
Prupe.7G172200 Prunus persica HOM05D001582 ORTHO05D001598 9.0e-15 84.0 77 54.5
Ciclev10000430m.g Citrus clementina HOM05D001582 ORTHO05D001598 1.2e-14 83.6 77 55.8
Potri.007G106000 Populus trichocarpa HOM05D001582 ORTHO05D001598 1.2e-14 83.6 89 48.3
GSVIVG01026479001 Vitis vinifera HOM05D001582 ORTHO05D001598 1.2e-14 83.6 77 57.1
Peaxi162Scf00528g00015 Petunia axillaris HOM05D001582 ORTHO05D001598 1.5e-14 83.2 77 54.5
EL10Ac4g09347 Beta vulgaris HOM05D001582 ORTHO05D001598 2.0e-14 82.8 77 54.5
Glyma.14G089400 Glycine max HOM05D001582 ORTHO05D001598 2.6e-14 82.4 77 55.8
Glyma.14G089900 Glycine max HOM05D001582 ORTHO05D001598 2.6e-14 82.4 77 55.8
Lj4C839T10 Lonicera japonica HOM05D001582 ORTHO05D001598 2.6e-14 82.4 79 53.2
vmacro12797 Vaccinium macrocarpon HOM05D001582 ORTHO05D001598 2.6e-14 82.4 77 55.8
Glyma.18G182100 Glycine max HOM05D001582 ORTHO05D001598 3.4e-14 82.0 77 55.8
Rhsim01G0228400 Rhododendron simsii HOM05D001582 ORTHO05D001598 3.4e-14 82.0 77 55.8
Hund13003 Selenicereus undatus HOM05D001582 ORTHO05D001598 3.4e-14 82.0 76 55.3
MSTRG.2650 Avicennia marina HOM05D001582 ORTHO05D001598 4.5e-14 81.6 77 54.5
CiPaw.04G082000 Carya illinoinensis HOM05D001582 ORTHO05D001598 4.5e-14 81.6 77 54.5
TPR.G25039 Trifolium pratense HOM05D001582 ORTHO05D001598 5.8e-14 81.3 76 55.3
CAN.G1609.12 Capsicum annuum HOM05D001582 ORTHO05D001598 7.6e-14 80.9 77 53.2
Eucgr.I00201 Eucalyptus grandis HOM05D001582 ORTHO05D001598 7.6e-14 80.9 77 53.2
SGA_v2.0_scaffold370G50116 Striga asiatica HOM05D001582 ORTHO05D001598 7.6e-14 80.9 77 51.9
CANSAT01G2044 Cannabis sativa HOM05D001582 ORTHO05D001598 9.9e-14 80.5 77 54.5
PSO384G2272 Papaver somniferum HOM05D001582 ORTHO05D001598 9.9e-14 80.5 77 50.6
Sabra07G0086800 Salix brachista HOM05D001582 ORTHO05D001598 9.9e-14 80.5 89 47.2
PSO407G0098 Papaver somniferum HOM05D001582 ORTHO05D001598 1.3e-13 80.1 77 51.9
Solyc04g009970.4 Solanum lycopersicum HOM05D001582 ORTHO05D001598 1.3e-13 80.1 77 54.5
PSO170G3843 Papaver somniferum HOM05D001582 ORTHO05D001598 1.7e-13 79.7 77 50.6
MD14G1040800 Malus domestica HOM05D001582 ORTHO05D001598 2.2e-13 79.3 77 51.9
Manes.05G206200 Manihot esculenta HOM05D001582 ORTHO05D001598 2.2e-13 79.3 77 51.9
Rhsim10G0133600 Rhododendron simsii HOM05D003614 ORTHO05D004156 2.9e-13 79.0 86 48.8
Sopen04g005100 Solanum pennellii HOM05D001582 ORTHO05D001598 2.9e-13 79.0 77 53.2
Aa31LG2G9900 Aethionema arabicum HOM05D001582 ORTHO05D001598 3.8e-13 78.6 76 53.9
Cfa002896 Carpinus fangiana HOM05D001582 ORTHO05D001598 3.8e-13 78.6 77 51.9
MELO3C008061.2 Cucumis melo HOM05D001582 ORTHO05D001598 3.8e-13 78.6 76 52.6
CsaV3_6G041590 Cucumis sativus L. HOM05D001582 ORTHO05D001598 3.8e-13 78.6 76 52.6
Lj3g0023393 Lotus japonicus HOM05D001582 ORTHO05D001598 3.8e-13 78.6 77 53.2
Medtr8g043760 Medicago truncatula HOM05D001582 ORTHO05D001598 3.8e-13 78.6 76 53.9
Phvul.011G186500 Phaseolus vulgaris HOM05D001582 ORTHO05D001598 3.8e-13 78.6 77 54.5
RcHm_v2.0_Chr2g0098931 Rosa chinensis HOM05D001582 ORTHO05D001598 3.8e-13 78.6 77 51.9
SGA_v2.0_scaffold237G43810 Striga asiatica HOM05D001582 ORTHO05D001598 3.8e-13 78.6 77 53.2
VMungo1127G1636 Vigna mungo HOM05D001582 ORTHO05D001598 4.9e-13 78.2 77 54.5
Cpa.g.sc90.38 Carica papaya HOM05D001582 ORTHO05D001598 6.4e-13 77.8 77 54.5
PGSC0003DMG400011498 Solanum tuberosum HOM05D001582 ORTHO05D001598 6.4e-13 77.8 77 53.2
Hma1.2p1_0476F.1_g160800 Hydrangea macrophylla HOM05D001582 ORTHO05D001598 8.4e-13 77.4 77 51.9
Sp2g04190 Schrenkiella parvula HOM05D001582 ORTHO05D001598 8.4e-13 77.4 77 53.2
FAN28G2098 Fragaria x ananassa HOM05D001582 ORTHO05D001598 1.1e-12 77.0 84 46.4
Actinidia28426 Actinidia chinensis HOM05D001582 ORTHO05D001598 1.4e-12 76.6 74 54.1
AUR62005141 Chenopodium quinoa HOM05D001582 ORTHO05D001598 1.4e-12 76.6 77 53.2
HanXRQChr11g0343831 Helianthus annuus HOM05D001582 ORTHO05D001598 1.4e-12 76.6 84 47.6
PSO339G0691 Papaver somniferum HOM05D001582 ORTHO05D001598 1.4e-12 76.6 77 48.1
ClCG01G015370 Citrullus lanatus HOM05D001582 ORTHO05D001598 1.9e-12 76.3 76 51.3
FAN26G0877 Fragaria x ananassa HOM05D001582 ORTHO05D001598 1.9e-12 76.3 84 46.4
AL2G16040 Arabidopsis lyrata HOM05D001582 ORTHO05D001598 2.4e-12 75.9 77 51.9
CARHR052430 Cardamine hirsuta HOM05D001582 ORTHO05D001598 2.4e-12 75.9 77 50.6
FvH4_1g11391 Fragaria vesca HOM05D001582 ORTHO05D001598 2.4e-12 75.9 84 45.2
Sc07g0007690 Simmondsia chinensis HOM05D001582 ORTHO05D001598 2.4e-12 75.9 77 51.9
Glyma.08G226933 Glycine max HOM05D001582 ORTHO05D001598 3.2e-12 75.5 77 50.6
Haze_25239 Corylus avellana HOM05D001582 ORTHO05D001598 4.2e-12 75.1 77 50.6
Zm00001eb210830 Zea mays HOM05D001582 ORTHO05D001598 4.2e-12 75.1 78 48.7
Ah.06g187800 Amaranthus hybridus HOM05D001582 ORTHO05D001598 5.4e-12 74.7 77 50.6
Carub.0002s0476 Capsella rubella HOM05D001582 ORTHO05D001598 5.4e-12 74.7 77 50.6
AT1G60560 Arabidopsis thaliana HOM05D001582 ORTHO05D001598 7.1e-12 74.3 77 50.6
CSS0013473 Camellia sinensis var. sinensis HOM05D001582 ORTHO05D001598 7.1e-12 74.3 77 50.6
CSS0043680 Camellia sinensis var. sinensis HOM05D001582 ORTHO05D001598 7.1e-12 74.3 77 50.6
CDE02G0448 Ceratophyllum demersum HOM05D001582 ORTHO05D001598 7.1e-12 74.3 78 50.0
Thhalv10023307m.g Eutrema salsugineum HOM05D001582 ORTHO05D001598 9.3e-12 73.9 77 51.9
Lsat_1_v5_gn_1_111740 Lactuca sativa HOM05D001582 ORTHO05D001598 9.3e-12 73.9 84 46.4
RcHm_v2.0_Chr4g0406971 Rosa chinensis HOM05D001582 ORTHO05D001598 9.3e-12 73.9 77 50.6
Cc01_g06560 Coffea canephora HOM05D001582 ORTHO05D001598 1.2e-11 73.6 76 50.0
Gorai.003G185900 Gossypium raimondii HOM05D001582 ORTHO05D001598 1.2e-11 73.6 75 49.3
Nitab4.5_0003780g0020 Nicotiana tabacum HOM05D001582 ORTHO05D001598 1.2e-11 73.6 89 47.2
ATR0796G278 Amborella trichopoda HOM05D001582 ORTHO05D001598 1.6e-11 73.2 78 50.0
CSS0003892 Camellia sinensis var. sinensis HOM05D001582 ORTHO05D001598 1.6e-11 73.2 77 50.6
Oeu004241.1 Olea europaea HOM05D001582 ORTHO05D001598 2.7e-11 72.4 77 51.9
A01p29350 Brassica napus HOM05D001582 ORTHO05D001598 3.5e-11 72.0 77 48.1
C01p37130 Brassica napus HOM05D001582 ORTHO05D001598 3.5e-11 72.0 77 48.1
BolC1t03677H Brassica oleracea HOM05D001582 ORTHO05D001598 3.5e-11 72.0 77 48.1
CDE02G2653 Ceratophyllum demersum HOM05D001582 ORTHO05D001598 3.5e-11 72.0 78 50.0
Sed0002053 Sechium edule HOM05D001582 ORTHO05D001598 4.6e-11 71.6 76 48.7
QL02p001677 Quercus lobata HOM05D001582 ORTHO05D001598 7.9e-11 70.9 77 49.4
Gohir.D03G176650 Gossypium hirsutum HOM05D001582 ORTHO05D001598 1.0e-10 70.5 71 50.7
BraA01t03067Z Brassica rapa HOM05D001582 ORTHO05D001598 1.3e-10 70.1 77 46.8
Os09g0309100 Oryza sativa ssp. japonica HOM05D001582 ORTHO05D001598 1.3e-10 70.1 78 44.9
Migut.D01709 Erythranthe guttata HOM05D001582 ORTHO05D001598 1.8e-10 69.7 70 52.9
Migut.J00169 Erythranthe guttata HOM05D001582 ORTHO05D001598 1.8e-10 69.7 70 52.9
Migut.L01072 Erythranthe guttata HOM05D001582 ORTHO05D001598 1.8e-10 69.7 70 52.9
unitig_699.g19731 Utricularia gibba HOM05D001582 ORTHO05D001598 2.3e-10 69.3 84 40.5
Gohir.A03G000028 Gossypium hirsutum HOM05D001582 ORTHO05D001598 3.0e-10 68.9 75 49.3
DCAR_001212 Daucus carota HOM05D001582 ORTHO05D001598 5.1e-10 68.2 79 48.1
SHI11468 Sapria himalayana HOM05D001582 ORTHO05D001598 1.5e-09 66.6 77 50.6
Lalb_Chr03g0032501 Lupinus albus HOM05D001582 ORTHO05D001598 3.3e-09 65.5 76 46.1
Medtr5g037070 Medicago truncatula HOM05D001582 ORTHO05D001598 2.8e-08 62.4 65 49.2
BcaB04g20272 Brassica carinata HOM05D001582 ORTHO05D001598 4.8e-08 61.6 76 43.4
ECA246G4675 Erigeron canadensis HOM05D001582 ORTHO05D001598 4.8e-08 61.6 76 42.1
PGR119G1303 Punica granatum HOM05D001582 ORTHO05D001598 1.1e-07 60.5 77 42.9
vmacro11991 Vaccinium macrocarpon HOM05D001582 ORTHO05D001598 1.1e-07 60.5 68 47.1
HPP92_011673 Vanilla planifolia HOM05D001582 ORTHO05D001598 4.0e-07 58.5 78 43.6


User provided reference genes

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