Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.0e-260 902.9 457 100.0
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 3.9e-220 768.1 459 85.8
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 5.8e-216 754.2 458 83.2
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 1.1e-201 706.8 459 79.5
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.8e-201 706.1 456 79.6
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 2.9e-199 698.7 457 78.8
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 3.2e-198 695.3 457 78.6
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 3.2e-198 695.3 458 76.9
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 1.8e-196 689.5 451 77.6
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 2.1e-194 682.6 457 76.8
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.8e-194 682.2 378 89.2
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 3.6e-194 681.8 431 79.8
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 3.6e-194 681.8 457 76.8
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 3.6e-194 681.8 426 80.3
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 4.8e-194 681.4 460 77.6
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 4.8e-194 681.4 456 77.0
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 1.8e-193 679.5 455 76.5
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 2.4e-193 679.1 455 76.5
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 3.1e-193 678.7 401 84.0
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.3e-193 677.9 453 76.6
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 9.0e-193 677.2 454 76.7
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.5e-192 676.4 434 78.3
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.5e-192 676.4 396 84.3
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 3.4e-192 675.2 461 76.1
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 4.5e-192 674.9 461 76.6
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 4.5e-192 674.9 388 86.1
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 5.8e-192 674.5 432 78.2
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 5.8e-192 674.5 459 74.5
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 9.9e-192 673.7 453 76.4
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 3.8e-191 671.8 423 80.6
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 3.8e-191 671.8 456 75.9
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 6.4e-191 671.0 434 79.3
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.1e-190 670.2 448 77.0
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 1.1e-190 670.2 451 78.0
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.1e-190 670.2 396 83.1
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 1.4e-190 669.8 389 85.6
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 1.4e-190 669.8 389 85.6
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 1.9e-190 669.5 455 74.5
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 2.4e-190 669.1 454 76.0
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 4.2e-190 668.3 388 84.8
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 5.5e-190 667.9 420 80.5
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 5.5e-190 667.9 389 84.6
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 5.5e-190 667.9 396 82.6
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 7.1e-190 667.5 445 77.1
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 9.3e-190 667.2 390 83.8
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 9.3e-190 667.2 389 85.3
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.2e-189 666.8 412 80.6
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 1.6e-189 666.4 455 76.7
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 2.1e-189 666.0 463 75.2
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 2.1e-189 666.0 389 85.3
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 1.3e-188 663.3 434 78.3
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 1.3e-188 663.3 386 85.2
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 2.3e-188 662.5 388 84.5
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.3e-188 662.5 387 84.0
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 6.7e-188 661.0 447 75.6
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 1.5e-187 659.8 389 84.1
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 1.9e-187 659.4 419 79.7
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 1.9e-187 659.4 384 85.2
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.5e-187 659.1 456 73.9
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 2.5e-187 659.1 396 83.3
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 3.3e-187 658.7 389 83.0
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 4.3e-187 658.3 462 75.8
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 4.3e-187 658.3 420 79.0
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 5.6e-187 657.9 391 83.9
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 7.4e-187 657.5 396 81.6
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.3e-186 656.8 465 74.8
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.6e-186 656.4 389 83.8
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 2.1e-186 656.0 398 81.7
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 2.1e-186 656.0 446 76.2
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.1e-186 656.0 511 68.5
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 6.2e-186 654.4 456 73.7
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 8.1e-186 654.1 466 73.8
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.8e-185 652.9 391 82.4
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 2.4e-185 652.5 459 74.1
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.1e-185 652.1 456 73.9
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 4.0e-185 651.7 407 80.6
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 9.0e-185 650.6 396 81.8
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.0e-184 649.4 468 71.8
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 2.0e-184 649.4 390 81.8
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 2.6e-184 649.0 390 82.1
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.4e-184 648.7 456 73.0
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 1.3e-183 646.7 434 74.7
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.7e-183 646.4 390 81.0
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 3.8e-183 645.2 391 82.4
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 3.8e-183 645.2 389 82.0
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 3.8e-183 645.2 389 82.0
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 3.8e-183 645.2 389 82.0
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 4.9e-183 644.8 391 82.1
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 6.5e-183 644.4 389 81.7
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 1.1e-182 643.7 390 82.1
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 1.4e-182 643.3 473 70.8
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.4e-182 643.3 389 81.7
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 2.5e-182 642.5 391 81.1
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 3.2e-182 642.1 391 81.8
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 4.2e-182 641.7 392 81.9
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.2e-182 641.7 378 84.4
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 2.7e-181 639.0 391 80.8
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 4.6e-181 638.3 454 71.4
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.3e-180 636.7 384 80.5
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.0e-180 635.6 414 77.5
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.5e-179 633.3 372 82.5
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.3e-170 603.6 467 66.8
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 4.8e-170 601.7 328 90.2
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 5.3e-169 598.2 364 78.8
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.9e-166 589.7 375 74.7
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 2.5e-166 589.3 445 69.7
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 1.4e-164 583.6 385 72.7
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 3.0e-164 582.4 353 83.0
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.8e-161 573.2 406 74.9
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 7.9e-157 557.8 375 72.8
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 2.4e-153 546.2 401 69.6
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 4.1e-153 545.4 361 76.5
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.3e-148 529.6 287 90.9
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.8e-146 522.7 373 68.6
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 4.8e-146 521.9 520 57.5
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.0e-143 514.2 287 86.4
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 2.6e-139 499.6 364 64.6
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 8.6e-135 484.6 348 76.1
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 1.1e-134 484.2 347 74.9
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.9e-134 483.4 376 68.6
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 2.6e-131 473.0 372 62.9
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.5e-120 436.0 280 75.7
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 5.9e-120 435.3 233 91.0
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.1e-116 424.5 308 71.4
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.6e-112 410.6 450 53.8
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 6.4e-98 362.1 224 78.1
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.3e-90 337.8 256 69.9
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 2.7e-80 303.5 316 47.8
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 3.3e-78 296.6 202 68.8
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 2.4e-76 290.4 273 59.0
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 9.3e-73 278.5 246 60.6
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 1.9e-70 270.8 161 82.6
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 1.8e-68 264.2 364 42.6
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 8.7e-63 245.4 207 65.7
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 9.7e-54 215.3 367 39.8
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 6.7e-47 192.6 184 59.8
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 2.0e-46 191.0 203 56.2
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.0e-42 178.7 113 73.5
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 6.3e-29 132.9 77 81.8
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 3.8e-26 123.6 129 55.0
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 3.8e-26 123.6 129 55.0
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.5e-26 122.5 83 67.5
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.5e-26 122.5 83 67.5
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 9.8e-22 109.0 77 71.4
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 6.3e-21 106.3 67 76.1
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 1.6e-19 101.7 113 49.6
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.8e-18 97.1 69 65.2
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 5.9e-11 73.2 126 43.7
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 8.6e-10 69.3 56 60.7


User provided reference genes

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