Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 3.8e-204 714.5 345 100.0
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.7e-167 592.8 344 83.7
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 8.4e-167 590.5 344 82.3
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 1.4e-161 573.2 344 79.4
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.0e-156 557.0 344 76.7
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.1e-155 553.5 345 77.4
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 1.9e-155 552.7 339 78.5
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 4.3e-155 551.6 342 76.6
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 7.3e-155 550.8 345 76.8
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 9.6e-155 550.4 345 77.4
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.3e-154 550.1 344 76.2
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 3.6e-154 548.5 344 75.9
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 2.4e-153 545.8 340 77.4
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.2e-152 543.5 342 76.3
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 7.6e-152 540.8 336 76.8
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 1.7e-151 539.7 340 77.1
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 1.7e-151 539.7 333 78.7
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 2.2e-151 539.3 348 76.4
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 2.9e-151 538.9 343 74.6
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 3.8e-151 538.5 342 75.1
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.9e-150 536.2 346 76.3
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 2.4e-150 535.8 340 76.5
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.2e-150 535.4 343 74.1
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.2e-150 535.4 342 74.9
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.2e-150 535.0 343 74.1
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 4.2e-150 535.0 339 75.2
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 5.4e-150 534.6 335 76.1
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 9.3e-150 533.9 366 71.6
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 2.1e-149 532.7 347 76.1
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.7e-149 532.3 345 75.1
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.5e-149 531.9 345 74.8
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 7.9e-149 530.8 343 73.2
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.0e-148 530.4 333 76.6
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.3e-148 529.3 345 74.5
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 8.7e-148 527.3 375 68.8
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 2.5e-147 525.8 346 74.3
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 2.5e-147 525.8 339 74.0
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 7.4e-147 524.2 340 75.3
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 9.6e-147 523.9 342 73.4
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.6e-146 523.1 340 75.0
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.6e-146 523.1 340 74.1
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 2.1e-146 522.7 345 71.3
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 2.1e-146 522.7 343 73.2
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.1e-146 522.7 344 74.1
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 2.8e-146 522.3 346 71.4
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.6e-146 521.9 341 74.8
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.1e-145 520.4 335 75.5
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.4e-145 520.0 343 74.9
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 3.1e-145 518.8 344 73.3
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 4.0e-145 518.5 345 73.9
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 5.3e-145 518.1 345 73.6
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.3e-145 518.1 344 73.5
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 1.5e-144 516.5 345 73.6
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 7.6e-144 514.2 343 74.3
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.7e-143 513.1 346 70.8
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 6.4e-143 511.1 340 73.2
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 8.4e-143 510.8 343 70.8
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 1.4e-142 510.0 343 72.0
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 7.1e-142 507.7 344 70.3
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 9.3e-142 507.3 346 69.4
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.2e-141 506.9 334 73.1
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 3.5e-141 505.4 343 69.4
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 4.6e-141 505.0 343 69.7
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 3.9e-140 501.9 345 70.7
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 3.9e-140 501.9 333 73.3
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 5.1e-140 501.5 343 73.2
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 5.1e-140 501.5 333 73.9
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 8.7e-140 500.7 341 71.3
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 1.1e-139 500.4 360 68.3
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 1.9e-139 499.6 345 71.0
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 2.5e-139 499.2 341 71.6
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 2.5e-139 499.2 341 71.6
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 3.3e-139 498.8 341 71.6
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 3.3e-139 498.8 346 71.4
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 9.6e-139 497.3 320 75.0
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.6e-138 496.5 341 71.6
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 3.7e-138 495.4 345 70.7
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 1.4e-137 493.4 404 63.1
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 1.8e-137 493.0 334 70.7
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 5.3e-137 491.5 350 67.4
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 3.4e-136 488.8 350 66.9
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 4.5e-136 488.4 349 68.8
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 8.4e-135 484.2 300 77.3
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 7.1e-134 481.1 322 71.7
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 9.3e-134 480.7 345 68.1
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 1.6e-133 479.9 343 68.2
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 2.7e-133 479.2 352 67.6
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 3.5e-133 478.8 335 67.8
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 7.9e-133 477.6 299 76.9
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 1.0e-132 477.2 339 66.4
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 2.3e-132 476.1 328 70.1
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 2.3e-132 476.1 345 68.7
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 3.9e-132 475.3 344 66.9
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 4.3e-131 471.9 342 68.4
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.3e-130 470.3 336 67.3
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 3.1e-129 465.7 346 67.6
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 5.3e-129 464.9 291 76.3
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 1.5e-128 463.4 346 66.8
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 4.5e-128 461.8 349 65.6
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 5.0e-127 458.4 344 66.3
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.5e-120 436.8 323 66.6
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.4e-116 423.7 250 78.0
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 4.4e-115 418.7 250 76.8
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 5.7e-115 418.3 233 83.7
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 2.4e-113 412.9 247 78.1
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 9.1e-113 411.0 333 62.5
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 2.5e-110 402.9 251 78.1
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 2.7e-109 399.4 333 62.8
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 2.8e-106 389.4 323 62.8
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 1.6e-104 383.6 309 61.8
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.2e-96 357.5 329 57.1
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.3e-95 354.0 231 72.3
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 4.7e-93 345.5 256 67.6
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 7.5e-91 338.2 241 70.1
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 9.8e-91 337.8 241 70.1
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 8.3e-90 334.7 237 70.9
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.6e-85 320.5 324 53.1
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 2.1e-85 320.1 239 67.8
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 3.0e-84 316.2 243 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 2.0e-67 260.4 173 72.8
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.4e-65 253.4 200 63.0
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.0e-64 250.4 200 63.5
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 3.9e-63 246.1 163 74.2
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 3.1e-60 236.5 345 41.7
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 4.0e-52 209.5 199 51.8
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 2.2e-50 203.8 179 57.0
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.7e-48 196.8 159 62.9
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 3.1e-28 130.2 73 83.6
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 8.4e-26 122.1 79 70.9
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 2.4e-20 104.0 57 77.2
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 3.6e-08 63.5 53 60.4


User provided reference genes

Program Settings