Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.0e-37 159.5 76 100.0
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.4e-26 121.7 76 73.7
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 3.7e-19 97.8 77 61.0
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.4e-18 95.9 76 60.5
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 7.1e-18 93.6 70 62.9
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 9.2e-18 93.2 73 61.6
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.3e-16 88.6 76 63.2
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.0e-16 88.2 74 59.5
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.0e-16 88.2 74 59.5
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.9e-16 87.8 74 59.5
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.6e-16 87.0 76 53.9
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.1e-15 86.3 77 57.1
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-15 85.9 76 61.8
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.5e-15 85.9 76 61.8
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.3e-15 84.7 73 56.2
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.3e-15 84.7 74 60.8
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.3e-15 83.6 72 56.9
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 7.3e-15 83.6 72 56.9
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 9.5e-15 83.2 72 59.7
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 2.1e-14 82.0 74 56.8
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.8e-14 81.6 78 55.1
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.1e-13 79.7 72 59.7
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.4e-13 79.3 71 56.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 2.4e-13 78.6 77 54.5
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 3.1e-13 78.2 74 55.4
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 5.2e-13 77.4 77 53.2
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 5.2e-13 77.4 77 54.5
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 6.8e-13 77.0 73 54.8
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 6.8e-13 77.0 77 53.2
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.5e-12 75.9 76 55.3
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-12 75.5 72 54.2
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 2.6e-12 75.1 75 52.0
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.6e-12 75.1 73 54.8
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.4e-12 74.7 74 55.4
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 3.4e-12 74.7 77 50.6
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 5.8e-12 73.9 76 52.6
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 5.8e-12 73.9 67 53.7
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 7.6e-12 73.6 70 52.9
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 1.3e-11 72.8 71 52.1
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.3e-11 72.8 72 52.8
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.2e-11 72.0 72 54.2
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.9e-11 71.6 74 54.1
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 3.8e-11 71.2 88 47.7
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 3.8e-11 71.2 75 54.7
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 4.9e-11 70.9 51 70.6
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.9e-11 70.9 73 53.4
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 8.4e-11 70.1 72 54.2
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 8.4e-11 70.1 83 53.0
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.4e-10 69.3 76 55.3
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.4e-10 69.3 73 50.7
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.9e-10 68.9 68 52.9
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 1.9e-10 68.9 77 45.5
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 2.4e-10 68.6 50 70.0
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.2e-10 68.2 82 47.6
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 3.2e-10 68.2 78 50.0
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 3.2e-10 68.2 81 51.9
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 4.1e-10 67.8 81 54.3
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.1e-10 67.8 82 47.6
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 4.1e-10 67.8 78 50.0
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 4.1e-10 67.8 72 51.4
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.1e-10 67.8 66 57.6
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 5.4e-10 67.4 82 47.6
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 5.4e-10 67.4 82 47.6
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 9.2e-10 66.6 71 49.3
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 9.2e-10 66.6 74 50.0
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 2.1e-09 65.5 76 51.3
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.5e-09 64.7 78 53.8
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 3.5e-09 64.7 72 51.4
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 4.6e-09 64.3 82 43.9
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 6.0e-09 63.9 81 46.9
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 6.0e-09 63.9 64 50.0
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.0e-08 63.2 63 50.8
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 1.7e-08 62.4 71 45.1
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.3e-08 62.0 83 39.8
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 3.0e-08 61.6 85 42.4
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 3.0e-08 61.6 85 42.4
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 3.0e-08 61.6 85 42.4
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 3.0e-08 61.6 54 64.8
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 3.9e-08 61.2 72 50.0
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 5.1e-08 60.8 70 52.9
Gohir.A05G242250 Gossypium hirsutum HOM05D037961 ORTHO05D004852 1.1e-07 59.7 79 44.3
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 1.5e-07 59.3 73 46.6
HPP92_001095 Vanilla planifolia HOM05D004540 ORTHO05D004852 1.5e-07 59.3 71 45.1
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.9e-07 58.9 76 40.8
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 1.9e-07 58.9 72 48.6
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.5e-07 58.5 76 40.8
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.5e-07 58.5 76 40.8
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 3.3e-07 58.2 76 40.8
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 3.3e-07 58.2 76 40.8
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 3.3e-07 58.2 76 40.8
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 3.3e-07 58.2 76 40.8
Gorai.009G252900 Gossypium raimondii HOM05D037961 ORTHO05D004852 3.3e-07 58.2 79 43.0
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.3e-07 57.8 84 38.1
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 4.3e-07 57.8 79 43.0
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 5.6e-07 57.4 75 41.3
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 5.6e-07 57.4 44 61.4
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 5.6e-07 57.4 44 61.4
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-06 56.2 76 43.4
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 1.2e-06 56.2 76 43.4
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.6e-06 55.8 72 38.9
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.6e-06 55.8 78 43.6
RcHm_v2.0_Chr6g0276561 Rosa chinensis HOM05D019963 ORTHO05D004852 2.1e-06 55.5 42 57.1
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.8e-06 55.1 75 37.3
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 3.6e-06 54.7 71 43.7
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 8.1e-06 53.5 75 46.7


User provided reference genes

Program Settings