Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.3e-98 361.3 181 100.0
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 1.5e-82 309.7 184 84.8
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 3.7e-81 305.1 185 83.2
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 3.7e-81 305.1 191 81.2
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 6.3e-81 304.3 189 81.0
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 2.6e-79 298.9 189 79.9
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 2.6e-79 298.9 186 81.7
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 1.0e-78 297.0 189 78.3
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 1.0e-78 297.0 189 78.3
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 1.3e-78 296.6 186 81.2
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 3.8e-78 295.0 175 85.1
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 5.0e-78 294.7 179 79.9
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 1.1e-77 293.5 179 81.0
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 2.5e-77 292.4 192 79.2
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 2.5e-77 292.4 192 79.2
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 2.5e-77 292.4 192 79.2
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.6e-76 289.7 187 78.6
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.1e-76 289.3 187 78.6
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.1e-76 289.3 187 78.6
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 3.6e-76 288.5 196 75.0
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 7.9e-76 287.3 192 77.1
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 7.9e-76 287.3 192 76.0
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 1.0e-75 287.0 192 77.1
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 1.4e-75 286.6 194 76.8
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 1.4e-75 286.6 176 78.4
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 1.4e-75 286.6 191 78.0
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 2.3e-75 285.8 176 79.5
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 3.9e-75 285.0 196 75.5
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 5.1e-75 284.6 195 75.4
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.1e-75 284.6 179 79.9
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 6.7e-75 284.3 184 77.7
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 6.7e-75 284.3 190 76.3
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 6.7e-75 284.3 190 77.4
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 8.8e-75 283.9 197 74.6
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 1.5e-74 283.1 183 80.3
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 1.5e-74 283.1 191 76.4
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 1.5e-74 283.1 176 80.7
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 2.0e-74 282.7 177 78.0
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 2.0e-74 282.7 193 75.6
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 2.6e-74 282.3 196 74.0
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 2.6e-74 282.3 191 77.0
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.6e-74 282.3 191 77.0
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 2.6e-74 282.3 192 76.0
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 4.4e-74 281.6 192 77.6
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 5.7e-74 281.2 196 76.5
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 7.4e-74 280.8 167 84.4
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 9.7e-74 280.4 191 76.4
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 9.7e-74 280.4 191 76.4
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 9.7e-74 280.4 194 74.7
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.3e-73 280.0 193 72.5
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.3e-73 280.0 191 76.4
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 1.7e-73 279.6 192 75.5
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 2.8e-73 278.9 196 74.0
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 4.8e-73 278.1 189 75.7
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 4.8e-73 278.1 189 74.6
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 8.2e-73 277.3 178 77.5
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 1.1e-72 276.9 194 74.7
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.8e-72 276.2 190 76.3
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 1.8e-72 276.2 190 74.2
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 3.1e-72 275.4 187 77.0
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 2.6e-71 272.3 199 72.4
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 3.5e-71 271.9 193 74.1
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 4.5e-71 271.6 196 71.4
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 5.9e-71 271.2 195 71.8
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 7.7e-71 270.8 199 72.9
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 1.7e-70 269.6 182 74.7
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 2.2e-70 269.2 195 71.3
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 8.5e-70 267.3 189 73.0
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 1.1e-69 266.9 195 71.8
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 1.4e-69 266.5 205 67.8
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 3.2e-69 265.4 187 72.7
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.7e-68 261.5 189 70.4
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.7e-68 261.5 189 70.4
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 6.1e-68 261.2 192 72.9
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 3.0e-67 258.8 187 69.5
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 4.4e-66 255.0 175 74.3
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 7.4e-66 254.2 181 70.7
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 3.1e-64 248.8 201 67.7
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 3.1e-64 248.8 154 80.5
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 5.9e-63 244.6 198 65.7
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 7.7e-63 244.2 201 66.2
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 7.7e-63 244.2 201 66.2
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 7.7e-63 244.2 201 66.2
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 7.7e-63 244.2 201 66.2
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 7.7e-63 244.2 194 68.0
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 1.0e-62 243.8 201 65.7
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 1.7e-62 243.0 190 67.4
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 2.2e-62 242.7 198 66.2
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 2.2e-62 242.7 202 65.3
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 2.2e-62 242.7 204 65.2
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 2.2e-62 242.7 204 65.2
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 2.9e-62 242.3 198 65.7
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 6.5e-62 241.1 205 63.4
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 4.2e-61 238.4 151 77.5
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 5.5e-61 238.0 163 72.4
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 9.4e-61 237.3 185 65.9
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 3.3e-58 228.8 204 61.8
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 2.9e-54 215.7 163 68.1
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 2.8e-49 199.1 179 60.9
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 6.3e-49 198.0 172 57.6
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 9.1e-48 194.1 179 59.8
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 7.2e-45 184.5 172 51.7
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 1.6e-44 183.3 171 53.8
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 2.1e-44 183.0 143 65.0
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.6e-42 176.0 172 49.4
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.8e-40 169.9 104 76.0
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.2e-39 167.2 177 54.8
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 2.0e-39 166.4 104 75.0
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 1.7e-38 163.3 96 82.3
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 3.5e-31 139.0 117 57.3
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 4.6e-23 112.1 131 48.9
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.2e-20 104.0 61 82.0
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 3.7e-17 92.4 68 63.2
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 3.6e-12 75.9 53 71.7
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 7.6e-10 68.2 56 64.3
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 6.0e-07 58.5 38 78.9


User provided reference genes

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