Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 2.0e-164 582.4 310 100.0
Nn1g04620 Nelumbo nucifera HOM05D005305 ORTHO05D006394 5.8e-50 202.2 116 89.7
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.1e-48 198.0 198 56.1
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 4.9e-41 172.6 177 53.1
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 4.1e-32 142.9 220 42.3
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 3.0e-30 136.7 201 41.8
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 3.9e-30 136.3 230 40.9
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 4.3e-29 132.9 198 46.5
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 9.5e-29 131.7 205 43.4
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 2.1e-28 130.6 211 40.8
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 4.7e-28 129.4 194 42.8
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 8.1e-28 128.6 193 42.5
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 1.4e-27 127.9 177 44.6
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.4e-27 127.9 206 42.7
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 1.8e-27 127.5 206 42.7
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 8.9e-27 125.2 168 46.4
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 1.5e-26 124.4 190 43.2
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 2.6e-26 123.6 208 40.9
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 3.4e-26 123.2 287 33.4
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 1.3e-25 121.3 216 40.7
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 1.7e-25 120.9 198 40.4
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 3.8e-25 119.8 213 39.0
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 3.8e-25 119.8 196 39.8
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 4.9e-25 119.4 195 39.5
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 8.4e-25 118.6 206 40.8
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 8.4e-25 118.6 187 39.0
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 1.4e-24 117.9 202 38.1
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 1.4e-24 117.9 202 38.1
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 1.9e-24 117.5 217 38.7
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.9e-24 117.5 227 37.0
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 1.9e-24 117.5 213 38.5
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.9e-24 117.5 202 40.1
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 4.1e-24 116.3 173 43.4
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 5.4e-24 115.9 170 39.4
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 7.1e-24 115.5 214 38.8
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 9.2e-24 115.2 154 46.1
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 1.6e-23 114.4 209 41.1
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 2.1e-23 114.0 152 45.4
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 2.1e-23 114.0 243 35.8
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 2.1e-23 114.0 243 35.8
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 2.1e-23 114.0 243 35.8
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 2.7e-23 113.6 194 41.2
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 3.5e-23 113.2 216 40.3
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 4.6e-23 112.8 200 40.5
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 6.0e-23 112.5 192 40.1
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 6.0e-23 112.5 185 37.8
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 1.0e-22 111.7 240 37.1
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 1.0e-22 111.7 186 38.7
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 1.0e-22 111.7 218 38.5
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 1.7e-22 110.9 208 34.6
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 2.3e-22 110.5 158 36.1
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 2.3e-22 110.5 154 45.5
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 2.3e-22 110.5 220 37.3
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 3.0e-22 110.2 245 36.7
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 3.0e-22 110.2 208 34.6
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 3.9e-22 109.8 214 36.0
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 5.1e-22 109.4 244 41.0
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 6.6e-22 109.0 156 42.9
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 6.6e-22 109.0 155 42.6
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 6.6e-22 109.0 199 39.7
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 8.7e-22 108.6 205 39.5
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.1e-21 108.2 161 39.8
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.1e-21 108.2 129 45.7
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 1.9e-21 107.5 271 32.1
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 1.9e-21 107.5 201 39.3
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 1.9e-21 107.5 155 41.9
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 1.9e-21 107.5 155 41.9
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 2.5e-21 107.1 197 38.6
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 2.5e-21 107.1 205 39.0
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 2.5e-21 107.1 193 38.3
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 3.3e-21 106.7 191 36.6
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 1.2e-20 104.8 243 34.6
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.2e-20 104.8 262 34.7
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.2e-20 104.8 262 34.7
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 1.2e-20 104.8 191 38.2
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 1.6e-20 104.4 163 39.9
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 1.6e-20 104.4 183 36.6
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 1.6e-20 104.4 209 36.8
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 2.1e-20 104.0 201 37.8
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 2.1e-20 104.0 228 36.0
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 2.8e-20 103.6 163 38.7
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 2.8e-20 103.6 223 33.2
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 4.7e-20 102.8 166 39.2
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 1.8e-19 100.9 251 32.3
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 2.4e-19 100.5 219 33.3
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.2e-19 99.4 240 32.1
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 6.9e-19 99.0 237 32.1
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 1.5e-18 97.8 241 33.2
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 2.0e-18 97.4 213 32.9
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 2.6e-18 97.1 170 38.2
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.4e-18 96.3 225 36.0
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 5.8e-18 95.9 216 34.7
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 9.9e-18 95.1 219 30.6
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 1.3e-17 94.7 220 30.5
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 1.3e-17 94.7 205 37.6
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 2.2e-17 94.0 237 31.6
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.8e-17 93.2 187 34.2
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 8.4e-17 92.0 250 31.6
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.1e-16 91.7 224 32.6
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.9e-16 90.9 172 34.9
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 1.9e-16 90.9 218 34.4
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 2.4e-16 90.5 190 32.6
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 7.1e-16 89.0 151 36.4
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 1.6e-15 87.8 254 30.7
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.6e-15 86.3 167 34.7
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 3.0e-14 83.6 167 35.9
ATR0311G001 Amborella trichopoda HOM05D005305 ORTHO05D006394 6.6e-14 82.4 214 35.0
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 1.5e-13 81.3 167 34.7
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 1.3e-12 78.2 167 33.5
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 1.3e-12 78.2 158 34.8
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 6.2e-12 75.9 138 37.7
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 4.0e-11 73.2 127 37.8
Peaxi162Scf00025g00263 Petunia axillaris HOM05D005305 ORTHO05D006394 4.0e-11 73.2 133 38.3
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.9e-11 72.4 108 37.0
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 5.8e-10 69.3 111 36.9
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.9e-09 67.0 107 34.6
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 6.4e-09 65.9 100 38.0
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.1e-08 65.1 170 30.6
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 1.9e-08 64.3 96 38.5
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.3e-08 62.0 115 37.4
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.2e-07 61.6 147 29.9
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.7e-07 60.5 163 27.6
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.7e-07 60.5 163 27.6
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.7e-07 60.5 163 27.6
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.7e-07 60.5 163 27.6
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 3.5e-07 60.1 115 36.5
Sabra19G0015300 Salix brachista HOM05D005305 ORTHO05D006394 3.5e-07 60.1 90 40.0
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.6e-07 59.7 107 32.7
Ca_01558_v3 Cicer arietinum L. HOM05D007205 ORTHO05D009175 6.0e-07 59.3 131 31.3
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 6.0e-07 59.3 137 32.8
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 7.9e-07 58.9 186 28.5
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 7.9e-07 58.9 109 35.8
Nitab4.5_0006309g0060 Nicotiana tabacum HOM05D006072 ORTHO05D007363 7.9e-07 58.9 155 34.2
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 7.9e-07 58.9 144 31.9
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 7.9e-07 58.9 138 34.1
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 1.0e-06 58.5 109 35.8
Nitab4.5_0004318g0070 Nicotiana tabacum HOM05D006072 ORTHO05D007363 1.0e-06 58.5 128 37.5
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.3e-06 58.2 155 31.6
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 1.8e-06 57.8 140 28.6
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 1.8e-06 57.8 137 29.2
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 2.3e-06 57.4 103 36.9
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 2.3e-06 57.4 74 43.2
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 2.3e-06 57.4 74 43.2
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.3e-06 57.4 90 36.7
EL10Ac4g08760 Beta vulgaris HOM05D005305 ORTHO05D006394 3.0e-06 57.0 90 37.8
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 3.0e-06 57.0 74 41.9
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 3.0e-06 57.0 108 36.1
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 3.0e-06 57.0 74 41.9
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 3.9e-06 56.6 112 35.7
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 3.9e-06 56.6 108 36.1
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 3.9e-06 56.6 109 31.2
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 3.9e-06 56.6 143 32.2
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 5.1e-06 56.2 109 33.9
Aa31sc947G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 5.1e-06 56.2 109 33.9
Eucgr.H00590 Eucalyptus grandis HOM05D006072 ORTHO05D007363 5.1e-06 56.2 142 31.0
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 6.7e-06 55.8 107 35.5
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 6.7e-06 55.8 107 35.5
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 6.7e-06 55.8 146 31.5
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 6.7e-06 55.8 143 31.5
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.7e-06 55.8 71 42.3
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 6.7e-06 55.8 168 31.0
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 8.7e-06 55.5 176 30.7
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 8.7e-06 55.5 179 27.4


User provided reference genes

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