Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05964 Nelumbo nucifera HOM05D000239 ORTHO05D001609 2.8e-64 248.4 126 100.0
TAR633G0200 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.1e-31 140.2 122 61.5
TAR362G1078 Trochodendron aralioides HOM05D000239 ORTHO05D001609 2.4e-31 139.0 127 63.0
TAR636G0638 Trochodendron aralioides HOM05D000239 ORTHO05D001609 6.6e-29 131.0 125 58.4
Haze_01301 Corylus avellana HOM05D000239 ORTHO05D001609 3.3e-28 128.6 131 57.3
Cc03_g00770 Coffea canephora HOM05D000239 ORTHO05D001609 8.1e-27 124.0 127 58.3
Cfa015311 Carpinus fangiana HOM05D000239 ORTHO05D001609 3.4e-25 118.6 130 55.4
Aqoxy2G02718 Aquilegia oxysepala HOM05D000239 ORTHO05D001609 4.4e-25 118.2 150 53.3
MBI18_g37557_MAGBIO Magnolia biondii HOM05D000239 ORTHO05D001609 2.2e-24 115.9 128 53.9
Dinv15164 Davidia involucrata HOM05D000239 ORTHO05D001609 3.8e-24 115.2 136 53.7
Nitab4.5_0002294g0070 Nicotiana tabacum HOM05D000239 ORTHO05D001609 3.8e-24 115.2 124 55.6
Peaxi162Scf01160g00146 Petunia axillaris HOM05D000239 ORTHO05D001609 6.4e-24 114.4 124 55.6
Thecc.04G301300 Theobroma cacao HOM05D000239 ORTHO05D001609 8.4e-24 114.0 133 51.9
Nitab4.5_0002150g0110 Nicotiana tabacum HOM05D000239 ORTHO05D001609 1.9e-23 112.8 124 54.0
Peaxi162Scf01160g00140 Petunia axillaris HOM05D000239 ORTHO05D001609 3.2e-23 112.1 127 53.5
Actinidia18455 Actinidia chinensis HOM05D000239 ORTHO05D001609 9.3e-23 110.5 129 56.6
CANSAT78G1158 Cannabis sativa HOM05D000239 ORTHO05D001609 1.2e-22 110.2 136 50.0
arahy.Tifrunner.gnm1.ann1.HA59NF Arachis hypogaea HOM05D000239 ORTHO05D001609 2.1e-22 109.4 132 50.0
Actinidia40380 Actinidia chinensis HOM05D000239 ORTHO05D001609 2.7e-22 109.0 129 56.6
Glyma.07G239600 Glycine max HOM05D000239 ORTHO05D001609 2.7e-22 109.0 133 49.6
Sed0021682 Sechium edule HOM05D000239 ORTHO05D001609 2.7e-22 109.0 133 49.6
Glyma.17G033700 Glycine max HOM05D000239 ORTHO05D001609 6.0e-22 107.8 132 49.2
PGR004G1327 Punica granatum HOM05D000239 ORTHO05D001609 1.0e-21 107.1 129 53.5
PGSC0003DMG400004695 Solanum tuberosum HOM05D000239 ORTHO05D001609 2.3e-21 105.9 128 53.1
MD16G1153700 Malus domestica HOM05D000239 ORTHO05D001609 3.0e-21 105.5 142 47.9
arahy.Tifrunner.gnm1.ann1.P62TZN Arachis hypogaea HOM05D000239 ORTHO05D001609 3.9e-21 105.1 130 49.2
Prupe.1G116900 Prunus persica HOM05D000239 ORTHO05D001609 5.1e-21 104.8 149 47.7
CiPaw.01G138300 Carya illinoinensis HOM05D000239 ORTHO05D001609 6.6e-21 104.4 126 51.6
SalBow5G4228 Salvia bowleyana HOM05D000239 ORTHO05D001609 6.6e-21 104.4 127 52.0
Nitab4.5_0001260g0010 Nicotiana tabacum HOM05D000239 ORTHO05D001609 1.1e-20 103.6 123 52.8
Peaxi162Scf01160g00022 Petunia axillaris HOM05D000239 ORTHO05D001609 1.1e-20 103.6 123 52.0
CAN.G484.63 Capsicum annuum HOM05D000239 ORTHO05D001609 1.5e-20 103.2 125 53.6
Gorai.006G258400 Gossypium raimondii HOM05D000239 ORTHO05D001609 1.5e-20 103.2 139 48.2
Sopen12g033930 Solanum pennellii HOM05D000239 ORTHO05D001609 1.5e-20 103.2 127 52.8
SGA_v2.0_scaffold18G08406 Striga asiatica HOM05D000239 ORTHO05D001609 1.9e-20 102.8 121 52.1
Gohir.A09G234600 Gossypium hirsutum HOM05D000239 ORTHO05D001609 3.3e-20 102.1 140 47.1
Peaxi162Scf00228g00321 Petunia axillaris HOM05D000239 ORTHO05D001609 4.3e-20 101.7 123 52.8
Phvul.003G114400 Phaseolus vulgaris HOM05D000239 ORTHO05D001609 7.3e-20 100.9 143 46.2
Sabra08G0079300 Salix brachista HOM05D000239 ORTHO05D001609 7.3e-20 100.9 137 51.8
VMungo1215G1463 Vigna mungo HOM05D000239 ORTHO05D001609 7.3e-20 100.9 142 46.5
Eucgr.H04046 Eucalyptus grandis HOM05D000239 ORTHO05D001609 9.6e-20 100.5 131 51.1
Gohir.D09G235400 Gossypium hirsutum HOM05D000239 ORTHO05D001609 9.6e-20 100.5 139 47.5
Solyc12g099250.2 Solanum lycopersicum HOM05D000239 ORTHO05D001609 9.6e-20 100.5 127 52.0
Actinidia31542 Actinidia chinensis HOM05D000239 ORTHO05D001609 1.6e-19 99.8 125 53.6
Potri.008G105100 Populus trichocarpa HOM05D000239 ORTHO05D001609 1.6e-19 99.8 137 50.4
Sabra10G0112500 Salix brachista HOM05D000239 ORTHO05D001609 1.6e-19 99.8 134 49.3
Migut.G00064 Erythranthe guttata HOM05D000239 ORTHO05D001609 2.1e-19 99.4 124 54.0
Duzib151G1078 Durio zibethinus HOM05D000239 ORTHO05D001609 2.8e-19 99.0 128 49.2
Potri.010G146000 Populus trichocarpa HOM05D000239 ORTHO05D001609 2.8e-19 99.0 135 48.1
Nitab4.5_0000931g0060 Nicotiana tabacum HOM05D000239 ORTHO05D001609 3.6e-19 98.6 123 52.0
Rhsim04G0239200 Rhododendron simsii HOM05D000239 ORTHO05D001609 4.8e-19 98.2 133 52.6
ClCG06G004570 Citrullus lanatus HOM05D000239 ORTHO05D001609 6.2e-19 97.8 145 46.9
Nitab4.5_0002294g0040 Nicotiana tabacum HOM05D002944 ORTHO05D003377 6.2e-19 97.8 123 49.6
Peaxi162Scf01160g00021 Petunia axillaris HOM05D002944 ORTHO05D001609 6.2e-19 97.8 114 51.8
MSTRG.3857 Avicennia marina HOM05D000239 ORTHO05D001609 1.1e-18 97.1 126 51.6
RcHm_v2.0_Chr4g0425351 Rosa chinensis HOM05D000239 ORTHO05D001609 1.4e-18 96.7 143 46.2
FAN07G0577 Fragaria x ananassa HOM05D000239 ORTHO05D001609 1.8e-18 96.3 130 49.2
QL06p012355 Quercus lobata HOM05D000239 ORTHO05D001609 1.8e-18 96.3 146 47.3
QL06p012031 Quercus lobata HOM05D000239 ORTHO05D001609 2.4e-18 95.9 147 46.9
vmacro08043 Vaccinium macrocarpon HOM05D000239 ORTHO05D001609 2.4e-18 95.9 140 48.6
TWI73G0526 Tripterygium wilfordii HOM05D000239 ORTHO05D001609 3.1e-18 95.5 128 49.2
Dinv44283 Davidia involucrata HOM05D000239 ORTHO05D001609 5.3e-18 94.7 138 45.7
Migut.N00040 Erythranthe guttata HOM05D000239 ORTHO05D001609 6.9e-18 94.4 139 47.5
Manes.15G000200 Manihot esculenta HOM05D000239 ORTHO05D001609 6.9e-18 94.4 139 46.0
CSS0034961 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D001609 1.2e-17 93.6 123 51.2
Thhalv10020121m.g Eutrema salsugineum HOM05D000239 ORTHO05D001609 1.2e-17 93.6 128 49.2
Cpa.g.sc9.52 Carica papaya HOM05D000239 ORTHO05D001609 2.0e-17 92.8 140 46.4
SalBow8G5179 Salvia bowleyana HOM05D000239 ORTHO05D001609 2.6e-17 92.4 122 50.0
GSVIVG01034988001 Vitis vinifera HOM05D000239 ORTHO05D001609 2.6e-17 92.4 125 45.6
MSTRG.24822 Avicennia marina HOM05D000239 ORTHO05D001609 3.4e-17 92.0 136 48.5
COL.COLO4_34611 Corchorus olitorius HOM05D000239 ORTHO05D001609 3.4e-17 92.0 130 46.2
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 4.4e-17 91.7 132 47.7
Gohir.A10G172600 Gossypium hirsutum HOM05D000239 ORTHO05D001609 5.8e-17 91.3 144 44.4
Gorai.011G200300 Gossypium raimondii HOM05D000239 ORTHO05D001609 5.8e-17 91.3 144 44.4
Oeu051059.1 Olea europaea HOM05D000239 ORTHO05D001609 7.6e-17 90.9 119 52.1
TWI53G1080 Tripterygium wilfordii HOM05D000239 ORTHO05D001609 7.6e-17 90.9 141 44.7
Lalb_Chr13g0298461 Lupinus albus HOM05D000239 ORTHO05D001609 9.9e-17 90.5 132 43.9
Gohir.D10G179100 Gossypium hirsutum HOM05D000239 ORTHO05D001609 1.7e-16 89.7 144 43.8
BcaC09g47908 Brassica carinata HOM05D000239 ORTHO05D001609 2.2e-16 89.4 134 47.8
BolC1t05598H Brassica oleracea HOM05D000239 ORTHO05D001609 2.2e-16 89.4 134 47.8
Nitab4.5_0002294g0030 Nicotiana tabacum HOM05D000239 ORTHO05D001609 2.2e-16 89.4 125 48.0
Aa31LG5G17180 Aethionema arabicum HOM05D000239 ORTHO05D001609 2.9e-16 89.0 128 47.7
PGSC0003DMG400024018 Solanum tuberosum HOM05D000239 ORTHO05D001609 2.9e-16 89.0 126 46.8
Aa31LG11G8100 Aethionema arabicum HOM05D000239 ORTHO05D001609 3.8e-16 88.6 128 47.7
Ciclev10004362m.g Citrus clementina HOM05D000239 ORTHO05D001609 3.8e-16 88.6 136 48.5
Sp3g05550 Schrenkiella parvula HOM05D000239 ORTHO05D001609 3.8e-16 88.6 128 48.4
CsaV3_6G028600 Cucumis sativus L. HOM05D000239 ORTHO05D001609 4.9e-16 88.2 144 41.7
MELO3C021267.2 Cucumis melo HOM05D000239 ORTHO05D001609 6.4e-16 87.8 144 42.4
Gohir.A09G066200 Gossypium hirsutum HOM05D000239 ORTHO05D001609 6.4e-16 87.8 132 44.7
BolC5t34722H Brassica oleracea HOM05D000239 ORTHO05D001609 1.1e-15 87.0 124 47.6
FvH4_4g19800 Fragaria vesca HOM05D000239 ORTHO05D001609 1.1e-15 87.0 140 42.9
FAN12G4344 Fragaria x ananassa HOM05D000239 ORTHO05D001609 1.1e-15 87.0 140 42.9
Lj3A831T85 Lonicera japonica HOM05D000239 ORTHO05D001609 1.1e-15 87.0 126 46.8
Sc19g0003110 Simmondsia chinensis HOM05D000239 ORTHO05D001609 4.2e-15 85.1 129 48.1
AT3G06620 Arabidopsis thaliana HOM05D000239 ORTHO05D001609 5.4e-15 84.7 128 46.1
Solyc01g059860.3 Solanum lycopersicum HOM05D000239 ORTHO05D001609 7.1e-15 84.3 123 48.0
BraA05t22863Z Brassica rapa HOM05D000239 ORTHO05D001609 9.3e-15 84.0 127 45.7
Sp2g19790 Schrenkiella parvula HOM05D000239 ORTHO05D001609 9.3e-15 84.0 125 44.8
SpUn0021_0060 Schrenkiella parvula HOM05D000239 ORTHO05D001609 9.3e-15 84.0 125 44.8
AL3G17670 Arabidopsis lyrata HOM05D000239 ORTHO05D001609 1.6e-14 83.2 128 45.3
BcaC05g30547 Brassica carinata HOM05D000239 ORTHO05D001609 1.6e-14 83.2 134 44.8
EL10Ac3g05510 Beta vulgaris HOM05D000239 ORTHO05D001609 2.1e-14 82.8 133 47.4
CAN.G244.15 Capsicum annuum HOM05D000239 ORTHO05D001609 2.7e-14 82.4 123 47.2
Medtr4g122160 Medicago truncatula HOM05D000239 ORTHO05D001609 2.7e-14 82.4 115 44.3
BraA01t04427Z Brassica rapa HOM05D000239 ORTHO05D001609 3.5e-14 82.0 134 44.8
ECA233G4918 Erigeron canadensis HOM05D000239 ORTHO05D001609 3.5e-14 82.0 136 44.9
Sopen01g025170 Solanum pennellii HOM05D000239 ORTHO05D001609 3.5e-14 82.0 123 46.3
Ah.13g071860 Amaranthus hybridus HOM05D000239 ORTHO05D001609 4.6e-14 81.6 136 43.4
Gorai.006G080100 Gossypium raimondii HOM05D000239 ORTHO05D001609 4.6e-14 81.6 132 43.2
ATR0693G324 Amborella trichopoda HOM05D000239 ORTHO05D001609 7.9e-14 80.9 127 48.0
Lsat_1_v5_gn_6_1600 Lactuca sativa HOM05D000239 ORTHO05D001609 7.9e-14 80.9 134 44.0
PSO357G0028 Papaver somniferum HOM05D000239 ORTHO05D001609 7.9e-14 80.9 128 47.7
AUR62016210 Chenopodium quinoa HOM05D000239 ORTHO05D001609 1.0e-13 80.5 148 41.9
PSO170G0548 Papaver somniferum HOM05D000239 ORTHO05D001609 1.0e-13 80.5 126 44.4
Gohir.D09G065400 Gossypium hirsutum HOM05D000239 ORTHO05D001609 1.3e-13 80.1 132 42.4
Carub.0008s0933 Capsella rubella HOM05D000239 ORTHO05D001609 2.3e-13 79.3 125 46.4
AUR62039278 Chenopodium quinoa HOM05D000239 ORTHO05D001609 2.3e-13 79.3 148 41.9
A05p41420 Brassica napus HOM05D000239 ORTHO05D001609 3.0e-13 79.0 129 45.0
HanXRQChr02g0048591 Helianthus annuus HOM05D000239 ORTHO05D001609 3.0e-13 79.0 140 41.4
AL8G23210 Arabidopsis lyrata HOM05D000239 ORTHO05D001609 5.1e-13 78.2 124 45.2
AT1G67890 Arabidopsis thaliana HOM05D000239 ORTHO05D001609 5.1e-13 78.2 122 46.7
THA.LOC104818882 Tarenaya hassleriana HOM05D000239 ORTHO05D001609 5.1e-13 78.2 128 43.8
DCAR_023370 Daucus carota HOM05D000239 ORTHO05D001609 6.6e-13 77.8 125 45.6
Lj6C691T8 Lonicera japonica HOM05D000239 ORTHO05D001609 6.6e-13 77.8 133 45.1
CARHR081160 Cardamine hirsuta HOM05D000239 ORTHO05D001609 8.7e-13 77.4 128 43.8
SGA_v2.0_scaffold480G52300 Striga asiatica HOM05D000239 ORTHO05D001609 8.7e-13 77.4 122 44.3
BcaB04g19610 Brassica carinata HOM05D000239 ORTHO05D001609 1.9e-12 76.3 125 40.8
PSO210G0772 Papaver somniferum HOM05D000239 ORTHO05D001609 1.9e-12 76.3 128 43.8
AL2G26690 Arabidopsis lyrata HOM05D000239 ORTHO05D001609 2.5e-12 75.9 125 44.8
C09p05210 Brassica napus HOM05D000239 ORTHO05D001609 2.5e-12 75.9 127 43.3
A09p04830 Brassica napus HOM05D000239 ORTHO05D001609 7.4e-12 74.3 125 41.6
BraA09t36120Z Brassica rapa HOM05D000239 ORTHO05D001609 7.4e-12 74.3 125 41.6
Sed0016097 Sechium edule HOM05D000239 ORTHO05D001609 9.6e-12 73.9 113 45.1
BcaC04g23739 Brassica carinata HOM05D000239 ORTHO05D001609 1.3e-11 73.6 127 41.7
PSO761G0329 Papaver somniferum HOM05D000239 ORTHO05D001609 1.6e-11 73.2 136 39.7
Carub.0002s1438 Capsella rubella HOM05D000239 ORTHO05D001609 2.1e-11 72.8 128 42.2
CARHR182030 Cardamine hirsuta HOM05D000239 ORTHO05D001609 2.1e-11 72.8 126 42.9
DCAR_002513 Daucus carota HOM05D000239 ORTHO05D001609 3.6e-11 72.0 125 44.0
Oeu019978.1 Olea europaea HOM05D000239 ORTHO05D001609 4.8e-11 71.6 125 43.2
Nitab4.5_0002150g0120 Nicotiana tabacum HOM05D000239 ORTHO05D001609 6.2e-11 71.2 111 42.3
Nitab4.5_0002150g0170 Nicotiana tabacum HOM05D000239 ORTHO05D001609 6.2e-11 71.2 95 49.5
TPR.G25428 Trifolium pratense HOM05D000239 ORTHO05D001609 1.1e-10 70.5 126 40.5
Psat0ss8330g0200 Pisum sativum HOM05D000239 ORTHO05D001609 4.0e-10 68.6 120 40.0
Thhalv10003711m.g Eutrema salsugineum HOM05D000239 ORTHO05D001609 5.3e-10 68.2 120 42.5
Thhalv10020142m.g Eutrema salsugineum HOM05D000239 ORTHO05D001609 2.0e-09 66.2 120 41.7
CDE09G0889 Ceratophyllum demersum HOM05D000239 ORTHO05D001609 3.4e-09 65.5 121 38.0
Atru.chr4.2996 Acer truncatum HOM05D000239 ORTHO05D001609 5.8e-09 64.7 163 36.2
Oeu001170.1 Olea europaea HOM05D000239 ORTHO05D001609 2.2e-08 62.8 118 38.1
Lj4g0019177 Lotus japonicus HOM05D000239 ORTHO05D001609 6.4e-08 61.2 126 41.3
CSS0021732 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D001609 8.4e-08 60.8 63 52.4
CSS0031531 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D001609 8.4e-08 60.8 63 52.4
Zm00001eb136940 Zea mays HOM05D000239 ORTHO05D001609 1.4e-07 60.1 120 35.0
Gohir.A02G054701 Gossypium hirsutum HOM05D000239 ORTHO05D001609 7.1e-07 57.8 132 40.2
BolC9t53446H Brassica oleracea HOM05D000239 ORTHO05D001609 9.3e-07 57.4 127 36.2
Ca_00978_v3 Cicer arietinum L. HOM05D000239 ORTHO05D001609 1.6e-06 56.6 126 42.1
BcaC09g47910 Brassica carinata HOM05D000239 ORTHO05D001609 2.1e-06 56.2 126 36.5
MD13G1153300 Malus domestica HOM05D000239 ORTHO05D001609 2.7e-06 55.8 65 55.4
Lj6g0024694 Lotus japonicus HOM05D000239 ORTHO05D001609 7.9e-06 54.3 61 55.7


User provided reference genes

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