Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05958 Nelumbo nucifera HOM05D003346 ORTHO05D003961 8.6e-30 132.9 62 100.0
TAR628G0837 Trochodendron aralioides HOM05D003346 ORTHO05D003961 1.5e-13 79.0 41 87.8
arahy.Tifrunner.gnm1.ann1.RLY5XN Arachis hypogaea HOM05D003346 ORTHO05D003961 7.3e-13 76.6 35 100.0
arahy.Tifrunner.gnm1.ann1.W9Z0UK Arachis hypogaea HOM05D003346 ORTHO05D003961 7.3e-13 76.6 35 100.0
Cfa004788 Carpinus fangiana HOM05D003346 ORTHO05D003961 7.3e-13 76.6 35 100.0
Gohir.D01G169700 Gossypium hirsutum HOM05D003346 ORTHO05D003961 7.3e-13 76.6 35 100.0
Gorai.002G211300 Gossypium raimondii HOM05D003346 ORTHO05D003961 7.3e-13 76.6 35 100.0
Nn1g05959 Nelumbo nucifera HOM05D003346 ORTHO05D003961 7.3e-13 76.6 35 100.0
HPP92_001856 Vanilla planifolia HOM05D003346 ORTHO05D003961 1.2e-12 75.9 35 97.1
Phvul.006G198500 Phaseolus vulgaris HOM05D003346 ORTHO05D003961 1.6e-12 75.5 35 97.1
VMungo0540G0002 Vigna mungo HOM05D003346 ORTHO05D003961 1.6e-12 75.5 35 97.1
Lj9A341T43 Lonicera japonica HOM05D003346 ORTHO05D003961 2.1e-12 75.1 35 97.1
CSS0012090 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 2.8e-12 74.7 38 86.8
CSS0048261 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
CAN.G504.61 Capsicum annuum HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
CiPaw.06G161600 Carya illinoinensis HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Cc02_g20460 Coffea canephora HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
COL.COLO4_17845 Corchorus olitorius HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Duzib132G0992 Durio zibethinus HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Gohir.A01G178900 Gossypium hirsutum HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Gohir.A12G031300 Gossypium hirsutum HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Gorai.008G042800 Gossypium raimondii HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Nn5g29140 Nelumbo nucifera HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Nitab4.5_0009020g0020 Nicotiana tabacum HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Nitab4.5_0012886g0020 Nicotiana tabacum HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
PSO782G2665 Papaver somniferum HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Potri.009G081200 Populus trichocarpa HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Sabra09G0062900 Salix brachista HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
SalBow6G1029 Salvia bowleyana HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Solyc01g106430.3 Solanum lycopersicum HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Sopen01g048800 Solanum pennellii HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
PGSC0003DMG400003103 Solanum tuberosum HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Thecc.02G036500 Theobroma cacao HOM05D003346 ORTHO05D003961 2.8e-12 74.7 35 97.1
Actinidia28012 Actinidia chinensis HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
Actinidia29267 Actinidia chinensis HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
Dinv08954 Davidia involucrata HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
ECA236G1533 Erigeron canadensis HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
Gohir.D04G172350 Gossypium hirsutum HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
Gohir.D04G172500 Gossypium hirsutum HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
Gorai.012G161500 Gossypium raimondii HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
MD05G1051000 Malus domestica HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
Nitab4.5_0002290g0020 Nicotiana tabacum HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
PSO170G1170 Papaver somniferum HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 97.1
Peaxi162Scf00299g00235 Petunia axillaris HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
Potri.001G286900 Populus trichocarpa HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
Solyc10g047950.2 Solanum lycopersicum HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
Sopen10g018900 Solanum pennellii HOM05D003346 ORTHO05D003961 3.6e-12 74.3 35 94.3
HanXRQChr09g0250791 Helianthus annuus HOM05D003346 ORTHO05D003961 4.7e-12 73.9 35 94.3
MD09G1246600 Malus domestica HOM05D003346 ORTHO05D003961 4.7e-12 73.9 35 91.4
MD17G1239600 Malus domestica HOM05D003346 ORTHO05D003961 4.7e-12 73.9 35 91.4
Atru.chr6.1393 Acer truncatum HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
arahy.Tifrunner.gnm1.ann1.E6NZI1 Arachis hypogaea HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
arahy.Tifrunner.gnm1.ann1.UW1SNI Arachis hypogaea HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
MSTRG.16650 Avicennia marina HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
CSS0013432 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
CANSAT64G0316 Cannabis sativa HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
Cpa.g.sc20.58 Carica papaya HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
Ca_00191_v3 Cicer arietinum L. HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
DCAR_021918 Daucus carota HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
Dinv16043 Davidia involucrata HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
Lj5C224G7 Lonicera japonica HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
Lj6g0028202 Lotus japonicus HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
MBI16_g41327_MAGBIO Magnolia biondii HOM05D003346 ORTHO05D003073 6.2e-12 73.6 35 97.1
MD10G1058400 Malus domestica HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
Medtr2g010430 Medicago truncatula HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
Os02g0768600 Oryza sativa ssp. japonica HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
Psat1g212360 Pisum sativum HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
PGR042G2549 Punica granatum HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
SGA_v2.0_scaffold32G12959 Striga asiatica HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 91.4
SGA_v2.0_scaffold342G49417 Striga asiatica HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
TPR.G32666 Trifolium pratense HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
Zm00001eb256150 Zea mays HOM05D003346 ORTHO05D003961 6.2e-12 73.6 35 94.3
ATR0767G205 Amborella trichopoda HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 94.3
BcaC03g13267 Brassica carinata HOM05D003346 ORTHO05D003961 8.1e-12 73.2 36 91.7
BolC2t06360H Brassica oleracea HOM05D003346 ORTHO05D003961 8.1e-12 73.2 36 91.7
CDE07G1052 Ceratophyllum demersum HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Haze_19004 Corylus avellana HOM05D003346 ORTHO05D003961 8.1e-12 73.2 51 68.6
MELO3C018573.2 Cucumis melo HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
CsaV3_7G007250 Cucumis sativus L. HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Duzib052G1149 Durio zibethinus HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Migut.B00508 Erythranthe guttata HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 94.3
FvH4_2g10920 Fragaria vesca HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
FAN15G0783 Fragaria x ananassa HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
FAN20G2153 Fragaria x ananassa HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
FAN24G2235 Fragaria x ananassa HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
FAN27G2531 Fragaria x ananassa HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Gohir.D12G041000 Gossypium hirsutum HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 94.3
HanXRQChr05g0150331 Helianthus annuus HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Lsat_1_v5_gn_9_114300 Lactuca sativa HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Lj1g0009168 Lotus japonicus HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Lalb_Chr15g0090241 Lupinus albus HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 94.3
Lalb_Chr18g0060231 Lupinus albus HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Manes.07G048300 Manihot esculenta HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 94.3
PSO210G2397 Papaver somniferum HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 94.3
PSO761G0299 Papaver somniferum HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 94.3
Prupe.8G077800 Prunus persica HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
QL11p027476 Quercus lobata HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
RcHm_v2.0_Chr6g0269081 Rosa chinensis HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Sed0004910 Sechium edule HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
Sed0020205 Sechium edule HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 91.4
TAR376G0743 Trochodendron aralioides HOM05D003346 ORTHO05D003961 8.1e-12 73.2 35 94.3
EL10Ac1g01584 Beta vulgaris HOM05D003346 ORTHO05D003961 1.1e-11 72.8 35 91.4
ClCG09G016330 Citrullus lanatus HOM05D003346 ORTHO05D003961 1.1e-11 72.8 35 88.6
COL.COLO4_35344 Corchorus olitorius HOM05D003346 ORTHO05D003961 1.1e-11 72.8 35 94.3
ECA240G2920 Erigeron canadensis HOM05D003346 ORTHO05D003961 1.1e-11 72.8 35 88.6
Rhsim05G0094600 Rhododendron simsii HOM05D003346 ORTHO05D003961 1.1e-11 72.8 35 88.6
PGSC0003DMG400026784 Solanum tuberosum HOM05D003346 ORTHO05D003961 1.1e-11 72.8 35 91.4
unitig_747.g21247 Utricularia gibba HOM05D003346 ORTHO05D003961 1.1e-11 72.8 35 94.3
Cfa020697 Carpinus fangiana HOM05D003346 ORTHO05D003961 1.4e-11 72.4 35 88.6
Ciclev10028967m.g Citrus clementina HOM05D003346 ORTHO05D003961 1.4e-11 72.4 35 91.4
Eucgr.G01121 Eucalyptus grandis HOM05D003346 ORTHO05D003961 1.4e-11 72.4 35 85.7
Hma1.2p1_0435F.1_g152500 Hydrangea macrophylla HOM05D003346 ORTHO05D003961 1.4e-11 72.4 35 91.4
Hma1.2p1_2001F.1_g310680 Hydrangea macrophylla HOM05D003346 ORTHO05D003961 1.4e-11 72.4 35 91.4
Oeu014212.2 Olea europaea HOM05D003346 ORTHO05D003961 1.4e-11 72.4 35 91.4
Sc24g0001620 Simmondsia chinensis HOM05D003346 ORTHO05D003961 1.4e-11 72.4 35 91.4
Thecc.08G078600 Theobroma cacao HOM05D003346 ORTHO05D003961 1.4e-11 72.4 35 94.3
CDE04G2953 Ceratophyllum demersum HOM05D003346 ORTHO05D003961 1.8e-11 72.0 35 88.6
Gohir.A04G127800 Gossypium hirsutum HOM05D003346 ORTHO05D003961 1.8e-11 72.0 35 91.4
Peaxi162Scf00003g02931 Petunia axillaris HOM05D003346 ORTHO05D003961 1.8e-11 72.0 35 91.4
GSVIVG01009248001 Vitis vinifera HOM05D003346 ORTHO05D003961 1.8e-11 72.0 35 91.4
Aa31LG3G17420 Aethionema arabicum HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BcaB01g05568 Brassica carinata HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BcaB01g05663 Brassica carinata HOM05D002845 ORTHO05D003180 2.3e-11 71.6 35 91.4
BcaB01g05664 Brassica carinata HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BcaB05g21541 Brassica carinata HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BcaB08g37151 Brassica carinata HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BcaB08g37193 Brassica carinata HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
A10p27720 Brassica napus HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
C09p67820 Brassica napus HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BolC3t12997H Brassica oleracea HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BolC9t59543H Brassica oleracea HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BraA02t04993Z Brassica rapa HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BraA03t09765Z Brassica rapa HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
BraA10t44824Z Brassica rapa HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
Carub.0008s2530 Capsella rubella HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
CARHR203740 Cardamine hirsuta HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
CARHR278470 Cardamine hirsuta HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
AUR62040586 Chenopodium quinoa HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 88.6
Thhalv10004681m.g Eutrema salsugineum HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
Thhalv10014221m.g Eutrema salsugineum HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
Lsat_1_v5_gn_7_83301 Lactuca sativa HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
Sabra16G0179400 Salix brachista HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
Sp6g33730 Schrenkiella parvula HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
THA.LOC104804563 Tarenaya hassleriana HOM05D003346 ORTHO05D003961 2.3e-11 71.6 35 91.4
AL6G20070 Arabidopsis lyrata HOM05D003346 ORTHO05D003961 3.1e-11 71.2 35 91.4
AT5G09650 Arabidopsis thaliana HOM05D003346 ORTHO05D003961 3.1e-11 71.2 35 91.4
MSTRG.5298 Avicennia marina HOM05D003346 ORTHO05D003961 3.1e-11 71.2 35 91.4
CSS0024201 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 3.1e-11 71.2 35 88.6
CSS0032176 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 3.1e-11 71.2 35 88.6
Carub.0003s2760 Capsella rubella HOM05D003346 ORTHO05D003961 3.1e-11 71.2 35 91.4
Nitab4.5_0004008g0020 Nicotiana tabacum HOM05D003346 ORTHO05D003961 3.1e-11 71.2 35 91.4
THA.LOC104818456 Tarenaya hassleriana HOM05D003346 ORTHO05D003961 3.1e-11 71.2 35 88.6
THA.LOC104820153 Tarenaya hassleriana HOM05D003346 ORTHO05D003961 3.1e-11 71.2 35 88.6
CiPaw.05G025400 Carya illinoinensis HOM05D003346 ORTHO05D003961 4.0e-11 70.9 34 91.2
MBI18_g01153_MAGBIO Magnolia biondii HOM05D003346 ORTHO05D244271 5.2e-11 70.5 62 59.7
Glyma.13G253600 Glycine max HOM05D003346 ORTHO05D003961 6.8e-11 70.1 35 88.6
Glyma.15G061300 Glycine max HOM05D003346 ORTHO05D003961 6.8e-11 70.1 35 88.6
Hund17459 Selenicereus undatus HOM05D003346 ORTHO05D003961 6.8e-11 70.1 35 85.7
vmacro19585 Vaccinium macrocarpon HOM05D003346 ORTHO05D003961 6.8e-11 70.1 35 88.6
Aqoxy6G00611 Aquilegia oxysepala HOM05D003346 ORTHO05D003961 8.9e-11 69.7 35 88.6
AagrBONN_evm.TU.Sc2ySwM_362.2321 Anthoceros agrestis HOM05D000718 ORTHO05D002712 1.2e-10 69.3 35 85.7
Carub.0006s0815 Capsella rubella HOM05D003346 ORTHO05D003961 1.2e-10 69.3 35 88.6
AagrBONN_evm.TU.Sc2ySwM_362.1690 Anthoceros agrestis HOM05D003346 ORTHO05D003961 1.5e-10 68.9 35 82.9
AUR62026678 Chenopodium quinoa HOM05D003346 ORTHO05D003961 2.0e-10 68.6 35 85.7
CDE07G0051 Ceratophyllum demersum HOM05D003346 ORTHO05D003961 2.6e-10 68.2 35 85.7
MBI07_g05322_MAGBIO Magnolia biondii HOM05D003346 ORTHO05D003961 3.4e-10 67.8 39 82.1
TWI23G0433 Tripterygium wilfordii HOM05D003346 ORTHO05D003961 3.4e-10 67.8 35 82.9
TWI59G1408 Tripterygium wilfordii HOM05D003346 ORTHO05D003961 3.4e-10 67.8 35 82.9
CBR_g20327 Chara braunii HOM05D003346 ORTHO05D003961 9.8e-10 66.2 35 80.0
Cre10.g424100 Chlamydomonas reinhardtii HOM05D003346 ORTHO05D003961 9.8e-10 66.2 35 77.1
Mapoly0008s0217 Marchantia polymorpha HOM05D003346 ORTHO05D003961 9.8e-10 66.2 35 80.0
Pp3c5_20920 Physcomitrium patens HOM05D003346 ORTHO05D003961 1.3e-09 65.9 35 80.0
Cc02_g20450 Coffea canephora HOM05D003346 ORTHO05D003961 1.7e-09 65.5 35 74.3
SHI04911 Sapria himalayana HOM05D003346 ORTHO05D003961 1.7e-09 65.5 35 80.0
Hma1.2p1_0155F.1_g068320 Hydrangea macrophylla HOM05D003346 ORTHO05D003961 2.9e-09 64.7 39 76.9
AagrBONN_evm.TU.Sc2ySwM_362.2322 Anthoceros agrestis HOM05D003346 ORTHO05D003961 8.3e-09 63.2 35 74.3
SMO367G1075 Selaginella moellendorffii HOM05D003346 ORTHO05D003961 8.3e-09 63.2 35 74.3
AL8G41880 Arabidopsis lyrata HOM05D003346 ORTHO05D003961 1.1e-08 62.8 35 77.1
Pp3c25_5130 Physcomitrium patens HOM05D003346 ORTHO05D003961 1.1e-08 62.8 35 74.3
MCO16G586 Micromonas commoda HOM05D003346 ORTHO05D003961 3.2e-08 61.2 35 71.4
PGR042G2719 Punica granatum HOM05D003346 ORTHO05D003961 3.2e-08 61.2 42 69.0
Pp3c6_10750 Physcomitrium patens HOM05D003346 ORTHO05D003961 4.1e-08 60.8 35 71.4
Eucgr.G01119 Eucalyptus grandis HOM05D003346 ORTHO05D003961 7.1e-08 60.1 32 75.0
PGR042G1984 Punica granatum HOM05D003346 ORTHO05D003961 1.0e-06 56.2 34 76.5


User provided reference genes

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