Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05957 Nelumbo nucifera HOM05D004721 ORTHO05D005765 5.9e-31 136.7 62 100.0
MBI10_g00756_MAGBIO Magnolia biondii HOM05D004721 ORTHO05D005765 1.4e-11 72.4 47 68.1
Manes.04G087050 Manihot esculenta HOM05D004721 ORTHO05D005765 1.4e-11 72.4 47 68.1
GSVIVG01023826001 Vitis vinifera HOM05D004721 ORTHO05D005765 4.0e-11 70.9 47 66.0
Ciclev10028779m.g Citrus clementina HOM05D004721 ORTHO05D005765 5.2e-11 70.5 47 66.0
Duzib052G1174 Durio zibethinus HOM05D004721 ORTHO05D005765 5.2e-11 70.5 47 66.0
Nn5g28946 Nelumbo nucifera HOM05D004721 ORTHO05D005765 5.2e-11 70.5 47 63.8
PSO339G6113 Papaver somniferum HOM05D004721 ORTHO05D005765 5.2e-11 70.5 47 66.0
TAR628G0683 Trochodendron aralioides HOM05D004721 ORTHO05D005765 5.2e-11 70.5 47 66.0
TAR628G0727 Trochodendron aralioides HOM05D004721 ORTHO05D005765 5.2e-11 70.5 47 66.0
Cpa.g.sc106.2 Carica papaya HOM05D004721 ORTHO05D005765 6.8e-11 70.1 47 66.0
Thecc.02G080400 Theobroma cacao HOM05D004721 ORTHO05D005765 6.8e-11 70.1 47 66.0
Nn5g29707 Nelumbo nucifera HOM05D004721 ORTHO05D005765 8.9e-11 69.7 47 63.8
Potri.009G120600 Populus trichocarpa HOM05D004721 ORTHO05D005765 8.9e-11 69.7 47 66.0
Sabra09G0092900 Salix brachista HOM05D004721 ORTHO05D005765 8.9e-11 69.7 47 66.0
Gohir.A03G196800 Gossypium hirsutum HOM05D004721 ORTHO05D005765 1.2e-10 69.3 47 63.8
Gohir.D02G218100 Gossypium hirsutum HOM05D004721 ORTHO05D005765 1.2e-10 69.3 47 63.8
Gorai.005G246000 Gossypium raimondii HOM05D004721 ORTHO05D005765 1.2e-10 69.3 47 63.8
Oeu046144.1 Olea europaea HOM05D004721 ORTHO05D005765 1.2e-10 69.3 47 66.0
TWI31G1285 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 1.2e-10 69.3 47 63.8
QL11p045210 Quercus lobata HOM05D004721 ORTHO05D005765 1.5e-10 68.9 47 63.8
CDE07G1572 Ceratophyllum demersum HOM05D004721 ORTHO05D005765 2.0e-10 68.6 47 61.7
Dinv23488 Davidia involucrata HOM05D004721 ORTHO05D005765 2.6e-10 68.2 47 63.8
Lj9A377G93 Lonicera japonica HOM05D004721 ORTHO05D005765 2.6e-10 68.2 47 63.8
Actinidia00549 Actinidia chinensis HOM05D004721 ORTHO05D005765 3.4e-10 67.8 47 63.8
Lj5A193T104 Lonicera japonica HOM05D004721 ORTHO05D005765 3.4e-10 67.8 47 63.8
ClCG11G004130 Citrullus lanatus HOM05D004721 ORTHO05D005765 4.4e-10 67.4 47 59.6
Oeu020727.1 Olea europaea HOM05D004721 ORTHO05D005765 4.4e-10 67.4 47 63.8
Sed0009940 Sechium edule HOM05D004721 ORTHO05D005765 4.4e-10 67.4 47 61.7
THA.LOC104807751 Tarenaya hassleriana HOM05D004721 ORTHO05D005765 4.4e-10 67.4 47 61.7
TWI75G0248 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 4.4e-10 67.4 47 61.7
Glyma.04G009800 Glycine max HOM05D004721 ORTHO05D005765 5.8e-10 67.0 47 59.6
Phvul.009G005100 Phaseolus vulgaris HOM05D004721 ORTHO05D005765 5.8e-10 67.0 47 59.6
PGR042G3536 Punica granatum HOM05D004721 ORTHO05D005765 5.8e-10 67.0 47 59.6
SalBow6G3984 Salvia bowleyana HOM05D004721 ORTHO05D005765 5.8e-10 67.0 47 61.7
VMungo1309G2240 Vigna mungo HOM05D004721 ORTHO05D005765 5.8e-10 67.0 47 59.6
BcaB03g12244 Brassica carinata HOM05D004721 ORTHO05D005765 7.5e-10 66.6 47 61.7
DCAR_023012 Daucus carota HOM05D004721 ORTHO05D005765 7.5e-10 66.6 47 61.7
ECA240G1659 Erigeron canadensis HOM05D004721 ORTHO05D005765 7.5e-10 66.6 47 61.7
Thhalv10025644m.g Eutrema salsugineum HOM05D004721 ORTHO05D005765 7.5e-10 66.6 47 61.7
HanXRQChr03g0069331 Helianthus annuus HOM05D004721 ORTHO05D005765 7.5e-10 66.6 47 61.7
Aqoxy6G01195 Aquilegia oxysepala HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 59.6
CSS0047334 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 61.7
CSS0049052 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 61.7
Carub.0007s0100 Capsella rubella HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 61.7
Cfa005049 Carpinus fangiana HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 59.6
Cc02_g17240 Coffea canephora HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 61.7
Eucgr.G01697 Eucalyptus grandis HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 61.7
Lj1g0012947 Lotus japonicus HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 59.6
Medtr3g117220 Medicago truncatula HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 59.6
Nitab4.5_0005796g0050 Nicotiana tabacum HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 61.7
Peaxi162Scf00016g00435 Petunia axillaris HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 61.7
Psat5g005400 Pisum sativum HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 59.6
Sp7g36700 Schrenkiella parvula HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 61.7
PGSC0003DMG400030950 Solanum tuberosum HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 61.7
TPR.G32188 Trifolium pratense HOM05D004721 ORTHO05D005765 9.8e-10 66.2 47 59.6
CAN.G1544.7 Capsicum annuum HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
Haze_02333 Corylus avellana HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
Migut.B00208 Erythranthe guttata HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
FvH4_2g09630 Fragaria vesca HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
FAN15G0894 Fragaria x ananassa HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
FAN24G2181 Fragaria x ananassa HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
Lalb_Chr08g0246691 Lupinus albus HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 57.4
RcHm_v2.0_Chr6g0265981 Rosa chinensis HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
Solyc01g109930.4 Solanum lycopersicum HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
Sopen01g052120 Solanum pennellii HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
unitig_37.g12822 Utricularia gibba HOM05D004721 ORTHO05D005765 1.3e-09 65.9 47 59.6
AL7G11060 Arabidopsis lyrata HOM05D004721 ORTHO05D005765 1.7e-09 65.5 47 59.6
BcaC01g00283 Brassica carinata HOM05D004721 ORTHO05D005765 1.7e-09 65.5 47 61.7
C03p77610 Brassica napus HOM05D004721 ORTHO05D005765 1.7e-09 65.5 47 61.7
BolC3t20019H Brassica oleracea HOM05D004721 ORTHO05D005765 1.7e-09 65.5 47 61.7
MELO3C023324.2 Cucumis melo HOM05D004721 ORTHO05D005765 1.7e-09 65.5 47 59.6
CsaV3_2G015040 Cucumis sativus L. HOM05D004721 ORTHO05D005765 1.7e-09 65.5 47 59.6
Glyma.06G009800 Glycine max HOM05D004721 ORTHO05D005765 1.7e-09 65.5 47 57.4
SGA_v2.0_scaffold32G13194 Striga asiatica HOM05D004721 ORTHO05D005765 1.7e-09 65.5 47 61.7
Atru.chr5.3082 Acer truncatum HOM05D004721 ORTHO05D005765 2.2e-09 65.1 47 61.7
Rhsim11G0180400 Rhododendron simsii HOM05D004721 ORTHO05D005765 2.2e-09 65.1 47 59.6
arahy.Tifrunner.gnm1.ann1.0UP1AG Arachis hypogaea HOM05D004721 ORTHO05D005765 2.9e-09 64.7 47 57.4
arahy.Tifrunner.gnm1.ann1.IE0TZZ Arachis hypogaea HOM05D004721 ORTHO05D005765 2.9e-09 64.7 47 57.4
CiPaw.06G132800 Carya illinoinensis HOM05D004721 ORTHO05D005765 2.9e-09 64.7 47 57.4
Sc08g0000660 Simmondsia chinensis HOM05D004721 ORTHO05D005765 2.9e-09 64.7 47 59.6
HPP92_022533 Vanilla planifolia HOM05D004721 ORTHO05D005765 2.9e-09 64.7 47 59.6
Aa31LG6G16140 Aethionema arabicum HOM05D004721 ORTHO05D005765 3.7e-09 64.3 47 59.6
ATR1158G041 Amborella trichopoda HOM05D004721 ORTHO05D005765 3.7e-09 64.3 47 59.6
MD05G1061200 Malus domestica HOM05D004721 ORTHO05D005765 3.7e-09 64.3 47 57.4
Prupe.8G090900 Prunus persica HOM05D004721 ORTHO05D005765 3.7e-09 64.3 47 57.4
Hund00240 Selenicereus undatus HOM05D004721 ORTHO05D005765 3.7e-09 64.3 47 59.6
arahy.Tifrunner.gnm1.ann1.P63ZP0 Arachis hypogaea HOM05D004721 ORTHO05D005765 4.9e-09 63.9 47 55.3
arahy.Tifrunner.gnm1.ann1.VA1NMQ Arachis hypogaea HOM05D004721 ORTHO05D005765 4.9e-09 63.9 47 55.3
A08p23810 Brassica napus HOM05D004721 ORTHO05D005765 4.9e-09 63.9 47 59.6
Cfa005051 Carpinus fangiana HOM05D004721 ORTHO05D005765 4.9e-09 63.9 47 57.4
Lsat_1_v5_gn_9_107961 Lactuca sativa HOM05D004721 ORTHO05D005765 4.9e-09 63.9 47 59.6
Os07g0191000 Oryza sativa ssp. japonica HOM05D004721 ORTHO05D005765 4.9e-09 63.9 47 55.3
Ah.01g019120 Amaranthus hybridus HOM05D004721 ORTHO05D005765 6.4e-09 63.5 47 57.4
BraA08t34333Z Brassica rapa HOM05D004721 ORTHO05D005765 6.4e-09 63.5 47 59.6
AUR62011286 Chenopodium quinoa HOM05D004721 ORTHO05D005765 6.4e-09 63.5 47 57.4
EL10Ac9g21691 Beta vulgaris HOM05D004721 ORTHO05D005765 1.1e-08 62.8 47 55.3
Mapoly0009s0236 Marchantia polymorpha HOM05D004721 ORTHO05D005765 1.1e-08 62.8 47 57.4
AT4G39120 Arabidopsis thaliana HOM05D004721 ORTHO05D005765 1.4e-08 62.4 47 57.4
Zm00001eb333360 Zea mays HOM05D004721 ORTHO05D005765 1.4e-08 62.4 47 53.2
A01p00240 Brassica napus HOM05D004721 ORTHO05D005765 1.9e-08 62.0 47 59.6
BraA01t00031Z Brassica rapa HOM05D004721 ORTHO05D005765 1.9e-08 62.0 47 59.6
Pp3c14_5280 Physcomitrium patens HOM05D004721 ORTHO05D005765 1.9e-08 62.0 47 55.3
vmacro02078 Vaccinium macrocarpon HOM05D004721 ORTHO05D005765 2.4e-08 61.6 47 59.6
CBR_g50245 Chara braunii HOM05D004721 ORTHO05D005765 3.2e-08 61.2 47 51.1
CARHR247630 Cardamine hirsuta HOM05D004721 ORTHO05D005765 4.1e-08 60.8 47 57.4
MD10G1068900 Malus domestica HOM05D004721 ORTHO05D005765 5.4e-08 60.5 47 55.3
AagrBONN_evm.TU.Sc2ySwM_117.356 Anthoceros agrestis HOM05D004721 ORTHO05D005765 7.1e-08 60.1 47 57.4
SHI05562 Sapria himalayana HOM05D004721 ORTHO05D005765 9.2e-08 59.7 48 54.2
CANSAT11G2513 Cannabis sativa HOM05D004721 ORTHO05D005765 1.2e-07 59.3 47 51.1
SMO356G0699 Selaginella moellendorffii HOM05D004721 ORTHO05D005765 7.8e-07 56.6 47 51.1
Pp3c11_19670 Physcomitrium patens HOM05D004721 ORTHO05D005765 1.3e-06 55.8 46 43.5
AUR62016772 Chenopodium quinoa HOM05D004721 ORTHO05D005765 1.7e-06 55.5 51 47.1
Pp3c7_6620 Physcomitrium patens HOM05D004721 ORTHO05D005765 1.7e-06 55.5 46 45.7
Cre17.g723550 Chlamydomonas reinhardtii HOM05D004721 ORTHO05D005765 3.9e-06 54.3 47 46.8


User provided reference genes

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