Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 9.4e-170 600.1 308 100.0
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 9.9e-127 457.2 310 72.9
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 5.1e-115 418.3 300 69.0
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.3e-105 387.1 306 62.7
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 4.0e-104 382.1 310 64.8
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 2.6e-103 379.4 318 60.4
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 2.2e-102 376.3 307 65.1
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.9e-101 373.2 313 62.6
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.4e-101 372.9 307 61.6
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 2.7e-100 369.4 303 64.0
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 1.1e-98 364.0 314 62.1
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.5e-98 363.6 331 59.2
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 3.3e-98 362.5 307 64.2
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 7.4e-98 361.3 292 63.4
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 7.4e-98 361.3 295 56.3
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 2.1e-97 359.8 302 60.6
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 3.7e-97 359.0 310 60.3
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 1.4e-96 357.1 333 58.3
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 1.8e-96 356.7 295 55.6
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 4.0e-96 355.5 307 60.6
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 5.3e-96 355.1 314 58.9
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.5e-95 353.6 339 55.5
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.5e-95 353.6 312 59.6
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 9.9e-95 350.9 317 61.8
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 1.7e-94 350.1 323 57.9
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 2.2e-94 349.7 307 58.3
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 2.2e-94 349.7 310 60.0
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 3.8e-94 349.0 294 57.8
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 3.8e-94 349.0 310 60.0
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 4.9e-94 348.6 316 56.0
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 8.4e-94 347.8 346 55.8
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 4.2e-93 345.5 374 50.8
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 5.5e-93 345.1 306 61.4
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 7.1e-93 344.7 363 54.0
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 9.3e-93 344.4 332 52.7
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 9.3e-93 344.4 319 58.6
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 9.3e-93 344.4 325 58.2
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 1.6e-92 343.6 313 57.2
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.1e-92 343.2 353 55.2
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.1e-92 343.2 319 56.4
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 2.1e-92 343.2 319 56.4
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 2.7e-92 342.8 312 58.7
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 3.5e-92 342.4 312 59.0
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 4.6e-92 342.0 360 53.9
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 4.6e-92 342.0 315 58.1
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.3e-91 340.5 354 54.0
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 1.8e-91 340.1 316 56.6
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.3e-91 339.7 314 55.4
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 2.3e-91 339.7 325 56.0
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 3.0e-91 339.3 331 56.2
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 3.9e-91 339.0 292 55.8
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 6.7e-91 338.2 310 55.2
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.5e-90 337.0 360 53.6
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 2.5e-90 336.3 315 57.1
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 1.6e-89 333.6 351 56.1
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.1e-88 330.9 289 61.6
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 3.1e-88 329.3 321 54.8
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 5.3e-88 328.6 310 54.5
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 1.2e-87 327.4 343 53.1
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 5.8e-87 325.1 250 64.8
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.8e-86 322.4 299 55.5
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 6.5e-86 321.6 340 52.1
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.9e-85 320.1 299 54.8
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 3.2e-85 319.3 314 54.5
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 9.3e-85 317.8 312 56.1
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.6e-84 317.0 299 54.8
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 2.1e-84 316.6 312 55.8
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 1.8e-83 313.5 325 54.5
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 8.7e-83 311.2 327 51.4
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 1.9e-82 310.1 329 55.0
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 1.3e-81 307.4 308 51.9
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 2.2e-81 306.6 309 54.4
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 3.7e-81 305.8 315 55.2
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 5.3e-80 302.0 321 52.6
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 6.9e-80 301.6 320 52.8
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.0e-79 300.1 299 53.5
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 3.4e-79 299.3 330 48.5
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 1.0e-78 297.7 326 51.8
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 1.7e-78 297.0 326 51.8
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 2.9e-78 296.2 329 50.5
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 5.0e-78 295.4 325 50.8
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 6.5e-78 295.0 326 51.5
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 2.5e-77 293.1 339 49.0
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 2.5e-77 293.1 339 49.6
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 2.5e-77 293.1 335 50.7
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 9.4e-77 291.2 343 49.3
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.2e-76 290.8 338 47.9
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 1.2e-76 290.8 338 48.2
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.2e-76 290.8 338 47.9
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.2e-76 290.8 338 47.9
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 1.6e-76 290.4 338 48.2
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 3.6e-76 289.3 357 45.4
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 4.6e-76 288.9 329 48.0
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.3e-75 286.6 312 51.0
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 3.9e-75 285.8 326 50.3
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 1.5e-74 283.9 315 48.3
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 3.7e-73 279.3 327 49.5
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 4.8e-73 278.9 361 44.3
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 1.4e-72 277.3 353 46.5
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 2.4e-72 276.6 260 58.8
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 4.1e-72 275.8 330 50.3
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 1.5e-71 273.9 372 45.7
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 5.5e-69 265.4 305 47.2
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 5.5e-69 265.4 301 47.5
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.0e-67 261.2 309 47.6
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 6.5e-62 241.9 338 41.7
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 4.7e-60 235.7 318 46.9
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 6.3e-57 225.3 304 44.7
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.6e-55 220.7 335 40.9
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 6.7e-51 205.3 267 44.9
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 5.7e-50 202.2 220 49.1
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 1.3e-49 201.1 379 35.1
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 3.7e-49 199.5 326 38.0
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.5e-45 187.6 302 38.1
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 3.6e-44 183.0 157 56.1
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 3.0e-43 179.9 125 60.0
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 9.8e-42 174.9 133 60.9
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.9e-37 160.6 311 35.7
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 6.8e-35 152.1 316 36.7
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.6e-34 150.2 148 54.1
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 4.1e-32 142.9 288 31.6
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 7.0e-32 142.1 289 33.2
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 2.7e-31 140.2 152 43.4
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.4e-27 127.9 314 31.5
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 3.1e-27 126.7 142 45.1
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.6e-20 104.4 104 51.0
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 8.0e-20 102.1 221 36.2
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 3.4e-10 70.1 145 35.9
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 1.9e-08 64.3 51 52.9
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 3.5e-07 60.1 88 40.9
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 3.9e-06 56.6 112 33.9


User provided reference genes

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