Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05868 Nelumbo nucifera HOM05D000119 ORTHO05D000054 4.0e-66 254.6 126 100.0
Nn5g30181 Nelumbo nucifera HOM05D000119 ORTHO05D000054 5.2e-26 121.3 106 64.2
TAR625G1135 Trochodendron aralioides HOM05D000119 ORTHO05D000054 8.1e-19 97.4 105 56.2
TAR381G0877 Trochodendron aralioides HOM05D000119 ORTHO05D000054 6.9e-18 94.4 105 55.2
Hma1.2p1_0260F.1_g104670 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 2.8e-11 72.4 111 44.1
CSS0041456 Camellia sinensis var. sinensis HOM05D000119 ORTHO05D000054 4.8e-11 71.6 111 45.0
Nitab4.5_0000068g0400 Nicotiana tabacum HOM05D000119 ORTHO05D000054 1.1e-10 70.5 58 60.3
ClCG08G015600 Citrullus lanatus HOM05D000119 ORTHO05D000054 2.4e-10 69.3 114 40.4
Lsat_1_v5_gn_1_19840 Lactuca sativa HOM05D000119 ORTHO05D000054 2.4e-10 69.3 55 61.8
CANSAT25G1606 Cannabis sativa HOM05D000119 ORTHO05D000054 3.1e-10 68.9 84 47.6
CAN.G371.52 Capsicum annuum HOM05D000119 ORTHO05D000054 5.3e-10 68.2 84 45.2
CsaV3_2G028170 Cucumis sativus L. HOM05D000119 ORTHO05D000054 6.9e-10 67.8 112 40.2
CiPaw.15G063900 Carya illinoinensis HOM05D000119 ORTHO05D000054 9.0e-10 67.4 61 54.1
Nitab4.5_0008039g0010 Nicotiana tabacum HOM05D000119 ORTHO05D000054 1.2e-09 67.0 58 56.9
Dinv39341 Davidia involucrata HOM05D000119 ORTHO05D000054 1.5e-09 66.6 99 41.4
HanXRQChr09g0268111 Helianthus annuus HOM05D000119 ORTHO05D000054 1.5e-09 66.6 57 57.9
Dinv35996 Davidia involucrata HOM05D000119 ORTHO05D000054 2.0e-09 66.2 111 45.0
MELO3C010893.2 Cucumis melo HOM05D000119 ORTHO05D000054 2.6e-09 65.9 81 46.9
Sed0016441 Sechium edule HOM05D000119 ORTHO05D000054 2.6e-09 65.9 109 42.2
Solyc04g079360.1 Solanum lycopersicum HOM05D000119 ORTHO05D000054 2.6e-09 65.9 74 52.7
Sopen04g032970 Solanum pennellii HOM05D000119 ORTHO05D000054 2.6e-09 65.9 74 52.7
Sed0015866 Sechium edule HOM05D000119 ORTHO05D000054 3.4e-09 65.5 53 60.4
MSTRG.1328 Avicennia marina HOM05D000119 ORTHO05D000054 4.5e-09 65.1 104 44.2
Phvul.009G062700 Phaseolus vulgaris HOM05D000119 ORTHO05D000054 4.5e-09 65.1 109 43.1
MSTRG.25111 Avicennia marina HOM05D000119 ORTHO05D000054 5.8e-09 64.7 52 61.5
Potri.014G035100 Populus trichocarpa HOM05D000119 ORTHO05D000054 9.9e-09 63.9 126 38.1
Prupe.1G441700 Prunus persica HOM05D000119 ORTHO05D000054 1.7e-08 63.2 85 45.9
Sabra14G0025000 Salix brachista HOM05D000119 ORTHO05D000054 1.7e-08 63.2 127 39.4
PGSC0003DMG400007994 Solanum tuberosum HOM05D000119 ORTHO05D000054 2.2e-08 62.8 74 50.0
ClCG05G019570 Citrullus lanatus HOM05D000119 ORTHO05D000054 3.8e-08 62.0 112 36.6
Peaxi162Scf00566g00051 Petunia axillaris HOM05D000119 ORTHO05D000054 3.8e-08 62.0 49 61.2
VMungo1309G2359 Vigna mungo HOM05D000119 ORTHO05D000054 3.8e-08 62.0 110 42.7
Glyma.17G245200 Glycine max HOM05D000119 ORTHO05D000054 4.9e-08 61.6 79 46.8
Haze_17573 Corylus avellana HOM05D000119 ORTHO05D000054 6.4e-08 61.2 60 53.3
Gorai.009G208900 Gossypium raimondii HOM05D000119 ORTHO05D000054 6.4e-08 61.2 77 50.6
TWI56G0089 Tripterygium wilfordii HOM05D000119 ORTHO05D000054 6.4e-08 61.2 57 50.9
Gohir.D05G203000 Gossypium hirsutum HOM05D000119 ORTHO05D000054 8.4e-08 60.8 77 50.6
Lj4C50T8 Lonicera japonica HOM05D000119 ORTHO05D000054 8.4e-08 60.8 90 42.2
Gohir.A05G199916 Gossypium hirsutum HOM05D000119 ORTHO05D000054 1.1e-07 60.5 77 50.6
Sed0001759 Sechium edule HOM05D000119 ORTHO05D000054 1.1e-07 60.5 58 48.3
Manes.18G034822 Manihot esculenta HOM05D000119 ORTHO05D000054 1.4e-07 60.1 129 38.0
RcHm_v2.0_Chr6g0307001 Rosa chinensis HOM05D000119 ORTHO05D000054 1.4e-07 60.1 65 55.4
Lsat_1_v5_gn_4_124580 Lactuca sativa HOM05D000119 ORTHO05D000054 1.9e-07 59.7 69 43.5
Ciclev10002239m.g Citrus clementina HOM05D000119 ORTHO05D000054 2.4e-07 59.3 91 42.9
ECA247G3181 Erigeron canadensis HOM05D000119 ORTHO05D000054 2.4e-07 59.3 56 57.1
Glyma.06G036800 Glycine max HOM05D000119 ORTHO05D000054 2.4e-07 59.3 115 40.0
Cc10_g03870 Coffea canephora HOM05D000119 ORTHO05D000054 3.2e-07 58.9 54 55.6
MD15G1088000 Malus domestica HOM05D000119 ORTHO05D000054 3.2e-07 58.9 88 45.5
Rhsim06G0046000 Rhododendron simsii HOM05D000119 ORTHO05D000054 3.2e-07 58.9 67 46.3
Duzib093G0754 Durio zibethinus HOM05D000119 ORTHO05D000054 4.2e-07 58.5 62 56.5
FAN27G0172 Fragaria x ananassa HOM05D000119 ORTHO05D000054 4.2e-07 58.5 132 39.4
MD08G1107400 Malus domestica HOM05D000119 ORTHO05D000054 4.2e-07 58.5 61 49.2
Potri.002G128900 Populus trichocarpa HOM05D000119 ORTHO05D000054 4.2e-07 58.5 59 54.2
FvH4_2g35010 Fragaria vesca HOM05D000119 ORTHO05D000054 7.1e-07 57.8 128 39.8
COL.COLO4_26450 Corchorus olitorius HOM05D000119 ORTHO05D000054 9.3e-07 57.4 66 51.5
FAN20G1471 Fragaria x ananassa HOM05D000119 ORTHO05D000054 9.3e-07 57.4 132 39.4
Lalb_Chr08g0245681 Lupinus albus HOM05D000119 ORTHO05D000054 9.3e-07 57.4 107 38.3
Cfa018503 Carpinus fangiana HOM05D000119 ORTHO05D000054 1.2e-06 57.0 108 40.7
DCAR_019472 Daucus carota HOM05D000119 ORTHO05D000054 1.2e-06 57.0 77 46.8
FAN15G1363 Fragaria x ananassa HOM05D000119 ORTHO05D000054 1.2e-06 57.0 89 44.9
QL02p006138 Quercus lobata HOM05D000119 ORTHO05D000054 1.2e-06 57.0 121 34.7
Atru.chr13.621 Acer truncatum HOM05D000119 ORTHO05D000054 1.6e-06 56.6 84 40.5
Duzib041G0794 Durio zibethinus HOM05D000119 ORTHO05D000054 1.6e-06 56.6 56 50.0
Manes.05G170200 Manihot esculenta HOM05D000119 ORTHO05D000054 1.6e-06 56.6 116 35.3
Lalb_Chr11g0062501 Lupinus albus HOM05D000119 ORTHO05D000054 2.1e-06 56.2 114 36.8
Actinidia22607 Actinidia chinensis HOM05D000119 ORTHO05D000054 2.7e-06 55.8 53 52.8
Thecc.08G014300 Theobroma cacao HOM05D000119 ORTHO05D000054 2.7e-06 55.8 80 45.0
Oeu006157.1 Olea europaea HOM05D000119 ORTHO05D000054 3.5e-06 55.5 79 44.3
Oeu032241.1 Olea europaea HOM05D000119 ORTHO05D000054 3.5e-06 55.5 107 36.4
Migut.C00610 Erythranthe guttata HOM05D000119 ORTHO05D000054 4.6e-06 55.1 54 51.9
Glyma.04G036700 Glycine max HOM05D000119 ORTHO05D000054 6.0e-06 54.7 109 39.4


User provided reference genes

Program Settings