Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 2666.3 1361 100.0
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1790.0 1366 68.2
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1228.8 1377 50.5
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1223.4 1364 51.8
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1219.1 1372 51.6
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1210.7 1359 51.9
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1204.1 1331 50.9
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1201.0 1384 49.9
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1199.9 1361 51.7
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1199.9 1362 51.2
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1197.2 1339 50.3
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1176.0 1378 48.9
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1174.8 1354 50.1
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1165.2 1360 48.8
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1159.1 1333 49.8
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1135.2 1361 48.6
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1133.6 1363 48.6
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 0.0e+00 1130.5 1354 48.4
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1127.1 1352 48.7
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1126.7 1356 48.7
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1125.5 1363 48.4
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1123.6 1357 49.0
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1121.7 1258 51.2
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1109.0 1359 48.1
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1102.4 1363 48.1
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1099.7 1284 49.1
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1091.3 1360 49.8
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1085.1 1364 47.4
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1079.3 1463 44.4
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1078.2 1371 47.8
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 0.0e+00 1077.0 1378 46.8
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 1.9e-310 1069.7 1360 48.9
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 7.1e-310 1067.8 1354 46.0
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.2e-306 1057.0 1380 44.9
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 1.3e-303 1047.0 1282 47.7
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 3.7e-303 1045.4 1364 48.8
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.1e-302 1043.9 1362 48.1
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 7.1e-302 1041.2 1362 47.8
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 4.6e-301 1038.5 1364 48.6
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 1.5e-299 1033.5 1345 45.9
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.2e-293 1013.8 1355 44.5
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 1.2e-293 1013.8 1353 45.0
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 7.8e-293 1011.1 1299 48.3
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.5e-291 1006.1 1349 44.3
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.8e-290 1002.7 1302 44.5
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 2.0e-288 996.5 1193 49.5
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.3e-284 983.8 1352 43.8
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 1.9e-283 979.9 1343 43.3
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 5.6e-283 978.4 1339 44.4
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 9.6e-275 951.0 1374 43.1
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 1.3e-274 950.7 1335 45.9
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 4.0e-273 945.7 1361 43.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 4.2e-270 935.6 1251 44.0
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 7.1e-270 934.9 1348 43.9
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.3e-268 929.9 1358 43.6
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 4.3e-267 925.6 1295 44.1
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.1e-265 921.0 1339 44.8
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.7e-263 913.7 1367 45.3
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.4e-262 910.6 1211 44.8
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 1.9e-262 910.2 1352 45.8
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 7.9e-261 904.8 1300 44.5
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 1.8e-260 903.7 1335 43.7
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 8.7e-260 901.4 1343 43.3
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 2.5e-259 899.8 1299 44.0
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 8.2e-258 894.8 1349 42.0
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.5e-256 890.6 1356 42.6
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.7e-255 887.1 1346 43.8
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 5.5e-254 882.1 1346 43.4
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 2.1e-253 880.2 1336 43.5
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 5.1e-244 849.0 1350 42.3
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 5.9e-240 835.5 1346 41.2
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 2.5e-238 830.1 1363 40.1
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 7.2e-238 828.6 1336 40.7
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 6.1e-221 772.3 1322 39.4
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.2e-219 768.1 730 58.8
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.3e-218 764.6 1293 38.7
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 2.4e-217 760.4 1355 39.0
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.3e-215 753.8 1357 40.4
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 5.2e-212 742.7 1361 37.0
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.8e-209 734.2 1362 36.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.9e-198 697.6 1325 37.2
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.4e-195 686.8 569 62.4
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 5.8e-195 686.0 966 41.5
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 4.9e-194 682.9 701 55.8
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.1e-193 681.8 1278 37.2
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 6.6e-191 672.5 918 42.6
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.6e-189 667.9 1285 36.0
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.1e-189 667.5 1343 35.8
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.1e-188 665.2 1350 34.9
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.3e-186 658.3 1344 35.0
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 6.2e-181 639.4 1089 38.3
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.1e-174 618.6 916 40.7
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.4e-172 611.7 961 39.2
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 4.9e-162 576.6 639 49.1
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 3.8e-154 550.4 716 47.5
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.6e-152 545.0 700 47.7
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 6.0e-152 543.1 730 47.1
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 5.3e-132 476.9 730 43.8
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 5.0e-130 470.3 662 43.2
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.2e-128 465.7 722 39.6
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 7.4e-126 456.4 817 38.9
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.0e-122 446.0 763 39.8
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.1e-100 372.9 812 30.9
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 5.5e-97 360.5 369 54.2
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 2.1e-96 358.6 684 40.2
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.0e-94 352.1 810 30.4
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 5.6e-89 334.0 912 33.0
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.6e-88 331.3 591 36.2
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 4.3e-81 307.8 700 35.0
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.0e-70 272.3 346 45.1
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 5.8e-62 244.2 754 27.1
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.2e-46 193.4 292 41.1
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 7.9e-43 180.6 271 41.0
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 5.1e-34 151.4 266 33.1
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 5.0e-29 134.8 572 29.4
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 5.1e-26 124.8 225 38.2
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 6.7e-26 124.4 372 24.7
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 3.1e-23 115.5 567 28.0
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 3.4e-22 112.1 116 50.9
Nn6g33590 Nelumbo nucifera HOM05D052452 ORTHO05D006357 5.0e-21 108.2 95 65.3
Nn4g23347 Nelumbo nucifera HOM05D052452 ORTHO05D006357 5.5e-20 104.8 88 64.8
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 2.7e-19 102.4 148 35.1
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 6.1e-19 101.3 372 24.7
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 3.0e-18 99.0 206 36.9
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 2.2e-16 92.8 210 37.1
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 2.6e-14 85.9 183 37.2
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 4.5e-14 85.1 190 33.2
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.0e-13 84.0 369 22.2
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 8.5e-13 80.9 184 34.8
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 2.5e-12 79.3 337 23.1
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.6e-11 76.6 178 36.5
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.6e-11 76.6 258 34.5
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.6e-11 76.6 258 34.5
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.8e-10 73.2 95 44.2
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 5.1e-10 71.6 214 34.1
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.6e-09 69.3 130 30.0
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 2.2e-08 66.2 83 45.8
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 2.8e-08 65.9 582 24.4
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 2.4e-07 62.8 582 24.2
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.0e-06 59.7 93 39.8
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 7.7e-06 57.8 95 36.8


User provided reference genes

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