Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 2.1e-45 185.7 116 100.0
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 5.0e-23 111.3 113 59.3
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 4.2e-22 108.2 114 61.4
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 5.5e-22 107.8 111 62.2
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 7.2e-22 107.5 118 58.5
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 9.4e-22 107.1 117 57.3
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 9.4e-22 107.1 117 58.1
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 2.1e-21 105.9 111 61.3
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 2.7e-21 105.5 98 64.3
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 4.7e-21 104.8 115 57.4
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 4.7e-21 104.8 115 57.4
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 4.7e-21 104.8 115 59.1
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 4.7e-21 104.8 99 64.6
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 6.1e-21 104.4 114 59.6
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 8.0e-21 104.0 122 54.1
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 2.3e-20 102.4 116 58.6
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 8.8e-20 100.5 116 57.8
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 1.5e-19 99.8 125 60.0
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 2.0e-19 99.4 122 54.9
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 2.0e-19 99.4 98 62.2
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 3.4e-19 98.6 122 52.5
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 7.5e-19 97.4 125 54.4
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 7.5e-19 97.4 126 55.6
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 7.5e-19 97.4 115 54.8
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 9.7e-19 97.1 121 55.4
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 1.3e-18 96.7 118 54.2
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 1.7e-18 96.3 118 55.1
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 2.2e-18 95.9 118 55.9
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 2.8e-18 95.5 118 55.1
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 2.8e-18 95.5 125 50.4
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 2.8e-18 95.5 114 57.0
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 3.7e-18 95.1 103 62.1
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 4.8e-18 94.7 124 54.0
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 4.8e-18 94.7 123 52.0
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 8.3e-18 94.0 121 52.9
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 8.3e-18 94.0 115 55.7
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 1.1e-17 93.6 120 52.5
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 1.1e-17 93.6 123 51.2
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 1.4e-17 93.2 107 58.9
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 1.4e-17 93.2 115 53.0
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 2.4e-17 92.4 106 61.3
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 3.1e-17 92.0 118 58.5
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 4.1e-17 91.7 115 51.3
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 7.0e-17 90.9 123 52.0
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 9.1e-17 90.5 118 56.8
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 1.2e-16 90.1 118 57.6
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 1.2e-16 90.1 99 57.6
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.6e-16 89.7 118 55.9
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 2.0e-16 89.4 118 57.6
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 2.7e-16 89.0 118 56.8
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 5.9e-16 87.8 117 51.3
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 7.7e-16 87.4 116 50.9
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 1.0e-15 87.0 118 55.9
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 1.0e-15 87.0 115 52.2
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 1.3e-15 86.7 100 60.0
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 1.7e-15 86.3 120 49.2
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.7e-15 86.3 101 58.4
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 1.7e-15 86.3 118 51.7
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 2.2e-15 85.9 101 55.4
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 2.2e-15 85.9 95 57.9
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 2.2e-15 85.9 95 57.9
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 2.9e-15 85.5 120 48.3
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 3.8e-15 85.1 118 50.8
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 5.0e-15 84.7 116 56.9
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 8.5e-15 84.0 114 53.5
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.5e-14 83.2 122 47.5
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 1.5e-14 83.2 124 49.2
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.9e-14 82.8 116 52.6
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 2.5e-14 82.4 103 52.4
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 2.5e-14 82.4 129 45.7
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 3.2e-14 82.0 116 50.9
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 3.2e-14 82.0 95 56.8
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 4.2e-14 81.6 116 51.7
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 7.2e-14 80.9 97 55.7
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 9.4e-14 80.5 116 51.7
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.4e-14 80.5 116 51.7
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 1.0e-12 77.0 98 51.0
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 1.4e-12 76.6 119 47.9
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 4.0e-12 75.1 104 54.8
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 4.0e-12 75.1 125 48.8
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 8.8e-12 73.9 105 50.5
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 5.7e-11 71.2 50 78.0
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 9.8e-11 70.5 125 46.4
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 9.8e-11 70.5 51 76.5
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 1.3e-10 70.1 48 81.2
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 6.3e-10 67.8 53 69.8
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 1.4e-09 66.6 82 53.7
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 3.1e-09 65.5 52 69.2
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 3.1e-09 65.5 132 39.4
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 2.7e-08 62.4 129 44.2
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 5.9e-08 61.2 127 44.1
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 2.3e-07 59.3 129 44.2
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 2.9e-07 58.9 126 42.9
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 2.9e-07 58.9 126 44.4
SMO167G0044 Selaginella moellendorffii HOM05D006797 ORTHO05D007696 2.9e-07 58.9 57 61.4
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 3.8e-07 58.5 56 58.9
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 5.0e-07 58.2 129 41.9
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 5.0e-07 58.2 127 44.1
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 6.6e-07 57.8 124 44.4
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 6.6e-07 57.8 124 44.4
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 3.3e-06 55.5 120 43.3
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 3.3e-06 55.5 120 43.3
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 3.3e-06 55.5 127 42.5
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 5.5e-06 54.7 68 55.9
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 9.5e-06 53.9 123 44.7
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 9.5e-06 53.9 127 40.9


User provided reference genes

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