Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 2.2e-212 742.3 437 100.0
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.3e-118 428.7 429 62.9
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.7e-112 408.7 417 61.9
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.1e-110 404.4 434 58.1
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 8.0e-106 388.3 375 61.1
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.8e-105 387.1 437 58.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.5e-101 372.9 436 57.1
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.2e-98 364.4 422 55.7
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.7e-95 354.0 389 55.5
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.9e-89 331.6 441 52.2
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.4e-86 323.6 448 49.3
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.4e-86 323.6 387 53.5
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 3.2e-86 323.2 423 51.8
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 9.2e-86 321.6 439 51.5
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 4.6e-85 319.3 469 48.4
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 3.9e-84 316.2 420 52.9
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.2e-82 311.2 441 47.6
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.1e-82 310.5 448 51.3
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 3.7e-79 299.7 390 51.3
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 6.4e-79 298.9 403 48.1
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.2e-77 294.7 385 50.4
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 7.8e-77 292.0 377 50.9
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.3e-75 286.2 440 48.2
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.8e-74 283.5 362 50.8
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 3.6e-74 283.1 429 50.1
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 3.6e-74 283.1 429 50.1
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 5.2e-73 279.3 458 42.8
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 4.4e-72 276.2 416 48.8
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 5.8e-72 275.8 455 48.4
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.3e-71 274.6 385 49.9
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 8.3e-71 271.9 436 45.0
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 7.1e-70 268.9 469 41.4
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 1.2e-69 268.1 382 48.4
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 2.1e-69 267.3 459 42.9
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.0e-68 265.0 387 48.8
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.3e-68 264.6 432 46.5
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.3e-68 263.8 448 43.1
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.1e-67 261.5 379 47.5
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 2.5e-67 260.4 472 41.3
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.5e-67 260.4 450 45.6
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 5.6e-67 259.2 482 43.8
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 9.5e-67 258.5 432 46.3
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 9.5e-67 258.5 432 46.3
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.1e-66 257.3 370 48.9
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 4.7e-66 256.1 550 38.9
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 1.1e-65 255.0 383 46.0
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.8e-65 254.2 550 38.9
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.3e-65 253.8 475 42.1
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 4.0e-65 253.1 512 41.2
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.4e-64 249.6 459 45.5
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 9.9e-64 248.4 401 47.9
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 6.4e-63 245.7 459 43.1
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 6.4e-63 245.7 395 45.8
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.4e-63 245.4 350 52.0
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-62 244.6 489 41.5
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.2e-62 241.9 393 43.8
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 2.7e-61 240.4 403 43.2
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.7e-60 237.7 441 45.6
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 3.0e-60 236.9 419 40.3
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 5.1e-60 236.1 453 42.4
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.1e-59 235.0 444 39.2
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 9.6e-59 231.9 425 40.5
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 9.6e-59 231.9 468 40.6
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 9.6e-59 231.9 494 38.1
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.2e-58 231.5 497 36.0
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 2.8e-58 230.3 430 41.6
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 3.6e-58 229.9 387 43.7
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 3.6e-58 229.9 387 43.7
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.6e-58 229.9 540 38.9
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 3.6e-58 229.9 425 43.8
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 4.7e-58 229.6 405 44.7
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.1e-57 228.4 304 48.4
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.4e-57 228.0 375 42.9
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 3.1e-57 226.9 445 39.1
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.0e-57 226.5 423 43.3
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 4.0e-57 226.5 282 50.7
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.8e-57 225.7 315 47.3
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 6.8e-57 225.7 278 51.1
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.4e-56 223.4 428 39.3
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 4.4e-56 223.0 363 45.7
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 4.4e-56 223.0 424 41.3
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.7e-55 221.1 462 40.0
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.9e-55 220.3 457 40.0
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 4.9e-55 219.5 363 44.9
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.4e-54 218.0 448 37.9
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.9e-54 217.6 446 37.4
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 4.2e-54 216.5 401 44.1
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 9.3e-54 215.3 417 42.2
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.6e-53 214.5 421 41.3
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.7e-53 213.8 506 37.9
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 4.6e-53 213.0 361 44.0
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 5.1e-52 209.5 459 35.9
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 5.6e-51 206.1 421 39.0
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 6.2e-50 202.6 558 32.3
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.4e-49 201.4 501 36.5
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 4.0e-49 199.9 428 39.7
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 4.0e-49 199.9 393 39.9
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 6.9e-49 199.1 483 35.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 2.6e-48 197.2 470 36.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.8e-48 196.1 369 39.6
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.9e-47 193.0 495 37.6
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.2e-46 190.3 477 35.2
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 4.2e-46 189.9 564 33.9
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 5.4e-46 189.5 496 33.9
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.0e-45 186.0 516 36.8
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 6.0e-45 186.0 516 36.6
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.3e-44 184.9 236 55.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.0e-44 183.7 456 36.2
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.1e-43 181.8 390 42.1
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 4.3e-43 179.9 337 44.8
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 4.3e-43 179.9 416 38.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 9.6e-43 178.7 480 33.5
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 6.2e-42 176.0 517 35.0
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 5.3e-41 172.9 505 34.5
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 6.9e-41 172.6 506 34.2
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.4e-40 170.2 548 34.5
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 9.9e-40 168.7 476 34.9
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.2e-39 167.5 487 34.7
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.2e-39 167.5 487 34.7
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 3.8e-39 166.8 506 32.2
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 1.4e-38 164.9 494 33.8
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 9.3e-38 162.2 558 32.6
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.6e-37 161.4 519 34.7
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.6e-37 161.4 558 32.6
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 2.7e-37 160.6 506 33.6
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.3e-36 157.5 516 30.8
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 1.9e-35 154.5 452 32.7
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.4e-33 148.3 483 30.0
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.8e-33 147.9 352 38.4
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.8e-33 147.9 352 38.6
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 9.0e-33 145.6 455 36.0
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.5e-32 144.8 369 36.6
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.6e-32 144.1 375 34.1
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.0e-31 142.1 371 34.8
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.7e-31 141.4 546 30.4
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.9e-30 137.9 370 36.2
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 3.2e-30 137.1 383 32.9
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.3e-28 131.7 202 50.0
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.9e-28 130.2 191 46.1
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.1e-26 124.4 422 32.0
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 6.9e-25 119.4 508 28.0
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 4.5e-24 116.7 442 31.0
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 5.9e-24 116.3 383 32.4
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.0e-23 115.5 525 28.6
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.7e-23 114.8 500 29.2
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 8.4e-23 112.5 178 50.0
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.4e-22 111.7 394 32.0
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 3.2e-22 110.5 372 32.0
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 4.2e-22 110.2 374 32.1
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 4.2e-22 110.2 401 31.2
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 4.2e-22 110.2 399 31.1
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 5.5e-22 109.8 398 32.9
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 4.6e-21 106.7 546 27.1
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.3e-20 105.1 390 30.5
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 5.1e-20 103.2 140 46.4
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 2.5e-19 100.9 297 33.7
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 3.3e-19 100.5 414 30.9
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 9.7e-19 99.0 374 31.8
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.1e-17 95.5 373 28.7
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.4e-17 95.1 322 30.4
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.4e-17 95.1 186 37.6
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.8e-17 94.7 332 28.9
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.4e-17 94.4 356 30.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 4.1e-17 93.6 100 60.0
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 5.3e-17 93.2 374 30.5
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 1.2e-16 92.0 373 30.0
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 6.1e-13 79.7 369 30.1
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 6.1e-13 79.7 362 30.9
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 6.1e-13 79.7 423 28.6
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.7e-11 73.2 123 40.7
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 8.2e-10 69.3 365 29.0
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-09 68.6 132 37.9
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.4e-09 68.6 76 47.4
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.4e-09 67.8 282 30.9
TAR628G1156 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.1e-09 65.9 48 62.5
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 2.0e-08 64.7 504 26.2
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.9e-08 63.2 87 49.4
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.9e-07 60.8 87 48.3
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 4.2e-06 57.0 104 36.5


User provided reference genes

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