Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 2.4e-243 845.1 435 100.0
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 4.6e-170 601.7 492 65.2
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.9e-152 543.1 471 61.6
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.1e-142 510.8 492 55.5
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 3.1e-142 509.2 487 56.9
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 5.8e-141 505.0 487 56.3
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 6.4e-140 501.5 479 56.8
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 8.4e-140 501.1 496 54.6
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.1e-139 500.7 487 56.3
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 7.1e-139 498.0 486 57.0
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 2.1e-138 496.5 492 54.7
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 8.7e-137 491.1 498 55.4
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 1.1e-136 490.7 500 55.4
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.1e-136 490.7 488 56.1
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.5e-136 490.3 487 55.2
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 1.9e-136 490.0 492 53.9
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.6e-135 486.9 496 55.2
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 6.2e-135 485.0 437 59.7
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 6.9e-134 481.5 468 55.6
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 9.0e-134 481.1 429 59.4
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.2e-133 480.7 495 54.1
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 3.4e-133 479.2 519 53.0
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 3.4e-133 479.2 492 54.1
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 5.8e-133 478.4 491 53.8
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 1.4e-131 473.8 487 53.8
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 2.5e-131 473.0 502 54.2
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 4.6e-130 468.8 492 53.7
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 6.0e-130 468.4 492 53.9
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 7.9e-130 468.0 491 52.5
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 6.7e-129 464.9 464 55.4
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 6.7e-129 464.9 495 51.7
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 4.3e-128 462.2 495 52.7
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 4.3e-128 462.2 505 53.5
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 2.1e-127 459.9 495 52.5
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 2.4e-126 456.4 489 52.8
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 9.0e-126 454.5 492 52.0
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 2.6e-125 453.0 488 53.7
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 5.8e-125 451.8 488 52.0
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 7.6e-125 451.4 501 52.5
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 2.2e-124 449.9 494 50.4
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 2.9e-124 449.5 492 51.8
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 3.8e-124 449.1 485 50.3
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 1.1e-123 447.6 487 52.2
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 2.5e-123 446.4 495 50.7
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 3.2e-123 446.0 489 51.1
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 9.3e-123 444.5 376 61.7
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 2.1e-122 443.4 460 52.0
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 6.1e-122 441.8 489 53.0
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 1.3e-121 440.7 493 49.7
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 3.9e-121 439.1 501 49.9
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 3.9e-121 439.1 489 49.9
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 5.1e-121 438.7 503 51.5
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 6.7e-121 438.3 487 50.5
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 2.5e-120 436.4 487 51.1
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 3.3e-120 436.0 487 51.7
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 7.4e-120 434.9 494 50.4
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 6.3e-119 431.8 487 49.9
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 1.4e-118 430.6 490 48.8
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 1.4e-118 430.6 494 51.8
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 3.1e-118 429.5 495 49.7
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 2.0e-117 426.8 490 50.8
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 3.8e-116 422.5 488 48.0
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 3.8e-116 422.5 488 47.7
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 6.5e-116 421.8 489 49.9
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 1.9e-115 420.2 489 49.9
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.9e-115 420.2 468 50.6
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 2.5e-115 419.9 494 47.2
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 3.2e-115 419.5 488 50.4
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.6e-114 417.2 480 48.8
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 3.6e-114 416.0 491 49.5
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 1.8e-113 413.7 515 48.7
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 2.5e-112 409.8 408 53.9
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 5.7e-112 408.7 491 49.3
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 5.7e-112 408.7 571 45.4
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 9.7e-112 407.9 491 48.7
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 3.7e-111 406.0 452 52.0
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 6.3e-111 405.2 458 50.7
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 8.2e-111 404.8 490 49.2
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 1.1e-110 404.4 490 49.2
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 2.4e-110 403.3 492 48.6
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 4.1e-110 402.5 461 49.0
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 2.0e-109 400.2 446 51.1
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 2.6e-109 399.8 491 49.1
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 7.7e-109 398.3 518 45.8
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.2e-108 396.7 497 45.7
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 8.5e-108 394.8 497 45.5
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 1.1e-107 394.4 490 48.0
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 1.1e-107 394.4 490 48.0
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 6.1e-106 388.7 490 48.4
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 4.4e-104 382.5 493 47.3
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 3.7e-103 379.4 433 50.8
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 4.1e-102 375.9 496 45.4
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 2.5e-99 366.7 498 44.0
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 5.5e-99 365.5 539 42.5
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 8.8e-97 358.2 527 42.1
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 2.8e-95 353.2 362 53.6
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 9.1e-94 348.2 388 50.0
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 3.8e-92 342.8 484 43.4
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 3.6e-90 336.3 357 51.5
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 5.7e-88 328.9 354 52.3
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 2.8e-87 326.6 353 51.3
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 5.0e-84 315.8 303 55.1
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 2.5e-83 313.5 398 44.5
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 9.4e-83 311.6 448 43.5
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.4e-81 307.8 242 67.8
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.7e-76 290.8 184 77.7
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 3.6e-66 256.5 235 59.1
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 9.2e-62 241.9 504 35.1
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 8.6e-60 235.3 425 36.0
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 5.1e-52 209.5 242 47.1
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 8.6e-52 208.8 223 51.1
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 3.4e-48 196.8 298 41.9
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 2.7e-45 187.2 246 44.3
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 3.3e-43 180.3 422 34.4
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 2.8e-42 177.2 135 67.4
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.4e-41 174.9 134 66.4
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 4.0e-41 173.3 192 49.5
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 2.1e-37 161.0 245 42.9
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 6.6e-36 156.0 131 62.6
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 6.9e-33 146.0 174 48.3
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 1.3e-31 141.7 139 54.0
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 1.9e-30 137.9 93 74.2
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 1.7e-28 131.3 170 44.1
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 8.7e-28 129.0 403 26.8
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 7.3e-27 125.9 164 51.2
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 5.3e-25 119.8 109 61.5
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 2.9e-23 114.0 229 34.5
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 7.4e-19 99.4 141 41.8
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 2.8e-18 97.4 279 28.3
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 7.4e-11 72.8 109 47.7
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 2.0e-08 64.7 72 55.6
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 2.0e-08 64.7 72 55.6
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 2.5e-06 57.8 63 41.3


User provided reference genes

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