Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 7.7e-261 903.3 459 100.0
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.3e-211 738.0 462 81.6
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.1e-210 733.8 437 84.0
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.3e-204 716.5 464 79.5
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.0e-204 715.3 461 79.8
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 1.5e-203 713.0 463 79.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.9e-203 712.6 455 79.1
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 2.5e-203 712.2 463 78.6
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 2.5e-203 712.2 458 79.5
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 4.8e-202 708.0 464 79.1
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 4.0e-201 704.9 458 76.6
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 6.9e-201 704.1 465 76.3
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 6.9e-201 704.1 458 76.6
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.5e-200 703.0 462 78.1
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 2.0e-200 702.6 458 77.9
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.6e-200 702.2 458 78.6
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 7.6e-200 700.7 458 78.4
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 2.2e-199 699.1 458 78.2
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 2.2e-199 699.1 435 80.7
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.9e-199 698.7 458 78.2
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 8.4e-199 697.2 462 76.8
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.4e-198 696.4 430 78.8
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.9e-198 696.0 463 76.5
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 2.5e-198 695.7 463 77.1
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 2.5e-198 695.7 463 76.7
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.6e-197 693.0 462 76.2
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 2.7e-197 692.2 449 78.0
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 7.9e-197 690.6 462 76.4
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.0e-196 690.3 465 74.8
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.9e-196 688.3 462 76.2
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.9e-196 688.3 462 75.8
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.9e-196 688.3 462 76.2
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 5.1e-196 688.0 463 75.2
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 3.3e-195 685.3 457 76.1
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.3e-195 684.9 447 76.7
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 9.6e-195 683.7 461 75.1
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 8.2e-194 680.6 459 75.4
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.1e-193 680.2 447 76.5
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.8e-193 679.5 447 76.3
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 4.1e-193 678.3 458 75.3
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 5.3e-193 677.9 459 76.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 2.6e-192 675.6 461 74.4
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.4e-192 675.2 463 74.9
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 3.4e-192 675.2 437 77.6
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 3.4e-192 675.2 437 77.6
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 7.6e-192 674.1 459 73.9
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.7e-191 672.9 454 75.1
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.2e-191 672.5 461 74.6
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 2.9e-191 672.2 429 77.9
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 6.5e-191 671.0 458 75.1
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 8.5e-191 670.6 461 74.0
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.4e-190 669.8 461 75.1
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.4e-190 669.8 438 76.3
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.9e-190 669.5 458 74.5
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 3.2e-190 668.7 455 74.3
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 2.7e-189 665.6 439 76.1
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 2.7e-189 665.6 425 77.4
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.7e-189 665.6 460 74.6
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.6e-189 665.2 443 76.3
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 4.6e-189 664.8 460 72.8
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 6.1e-189 664.5 431 76.6
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.0e-188 663.7 468 73.1
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.3e-188 663.3 460 73.5
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.3e-188 663.3 463 72.8
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 3.9e-188 661.8 461 73.1
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 6.7e-188 661.0 424 76.9
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 8.7e-188 660.6 468 73.3
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.5e-187 659.8 457 73.3
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 3.3e-187 658.7 458 72.9
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 4.3e-187 658.3 423 78.3
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 4.3e-187 658.3 458 72.9
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 7.4e-187 657.5 458 72.9
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 7.4e-187 657.5 426 76.5
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 9.7e-187 657.1 458 72.7
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 9.7e-187 657.1 458 72.7
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 1.8e-185 652.9 461 72.7
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.8e-185 652.9 443 75.4
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 4.1e-185 651.7 458 73.1
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 4.1e-185 651.7 449 72.4
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 2.0e-184 649.4 461 72.7
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 4.5e-184 648.3 485 70.7
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 7.7e-184 647.5 449 73.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 8.5e-183 644.0 461 72.0
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.6e-181 639.8 451 72.7
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.7e-181 639.0 454 72.2
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 6.1e-181 637.9 449 71.7
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 7.9e-181 637.5 457 72.9
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 1.4e-180 636.7 475 69.9
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.8e-180 636.3 465 71.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 1.8e-180 636.3 477 71.3
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 8.8e-180 634.0 477 69.6
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.0e-179 632.9 429 75.3
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 4.4e-179 631.7 453 72.2
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 4.4e-179 631.7 452 71.9
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.8e-178 629.0 451 72.3
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.7e-178 628.6 451 72.7
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 2.4e-177 625.9 419 75.4
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 2.4e-177 625.9 453 71.7
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.1e-177 625.5 452 72.3
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 6.9e-177 624.4 427 74.5
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 2.2e-175 619.4 453 70.9
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 3.8e-175 618.6 466 70.8
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 6.5e-175 617.8 477 68.3
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.3e-172 609.4 425 73.4
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 3.9e-172 608.6 460 67.8
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 2.6e-171 605.9 460 67.8
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 4.4e-171 605.1 463 69.1
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 9.7e-171 604.0 463 68.9
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 8.2e-170 600.9 579 58.0
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 3.1e-169 599.0 454 67.8
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.2e-168 597.0 423 70.2
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.6e-168 596.7 374 77.3
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.5e-168 595.1 460 67.0
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.0e-167 594.0 476 64.3
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 3.6e-165 585.5 468 66.7
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 6.3e-162 574.7 401 70.6
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 5.9e-160 568.2 447 63.8
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 7.7e-160 567.8 429 67.6
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 4.0e-156 555.4 447 64.2
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.5e-152 542.3 449 65.9
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.6e-149 533.5 374 72.7
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 4.0e-148 528.9 343 76.7
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.4e-145 520.4 446 59.6
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.5e-144 515.8 398 68.1
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.5e-142 510.4 350 75.1
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 6.8e-140 501.5 435 61.4
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 3.2e-137 492.7 349 67.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 6.6e-135 485.0 418 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.1e-134 484.2 411 61.3
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.8e-133 479.6 451 58.5
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 8.0e-133 478.0 419 60.6
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 7.5e-131 471.5 459 57.7
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.7e-122 443.7 320 69.7
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.8e-114 416.0 301 70.8
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.6e-101 372.9 336 60.4
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 6.4e-90 335.5 257 68.9
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.5e-86 323.6 268 66.0
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 6.9e-84 315.5 208 77.9
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 3.4e-83 313.2 211 76.3
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.6e-80 304.3 426 44.4
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 2.2e-69 267.3 197 68.0
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 4.4e-62 243.0 180 69.4
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.1e-49 201.8 154 68.8
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 4.8e-45 186.4 138 69.6
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 3.7e-37 160.2 209 46.9
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 6.1e-32 142.9 150 51.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 2.2e-29 134.4 149 51.7
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 7.0e-20 102.8 60 86.7
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.1e-12 79.0 56 66.1


User provided reference genes

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