Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 8.4e-54 213.4 104 100.0
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 3.2e-21 105.1 85 58.8
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.0e-19 100.1 85 56.5
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 6.7e-19 97.4 82 56.1
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 1.3e-17 93.2 76 59.2
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 2.4e-16 89.0 72 63.9
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 1.5e-15 86.3 54 70.4
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 2.0e-15 85.9 62 64.5
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 2.6e-15 85.5 83 55.4
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 3.4e-15 85.1 50 78.0
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 4.5e-15 84.7 87 51.7
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 7.7e-15 84.0 55 69.1
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 7.7e-15 84.0 59 64.4
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 1.0e-14 83.6 50 74.0
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 1.0e-14 83.6 77 55.8
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 1.3e-14 83.2 67 61.2
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 1.3e-14 83.2 87 52.9
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 3.8e-14 81.6 76 52.6
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 3.8e-14 81.6 89 51.7
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 5.0e-14 81.3 101 45.5
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 5.0e-14 81.3 102 43.1
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 6.5e-14 80.9 55 67.3
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 6.5e-14 80.9 64 60.9
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 6.5e-14 80.9 64 60.9
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 6.5e-14 80.9 89 50.6
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 6.5e-14 80.9 89 50.6
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 8.5e-14 80.5 64 60.9
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 8.5e-14 80.5 64 60.9
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 8.5e-14 80.5 64 60.9
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 8.5e-14 80.5 66 54.5
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 1.1e-13 80.1 68 52.9
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.1e-13 80.1 65 60.0
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.1e-13 80.1 65 60.0
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.1e-13 80.1 65 60.0
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.1e-13 80.1 54 66.7
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 1.1e-13 80.1 68 54.4
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 1.4e-13 79.7 68 51.5
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 1.4e-13 79.7 83 47.0
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 1.9e-13 79.3 54 66.7
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 1.9e-13 79.3 54 66.7
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 1.9e-13 79.3 54 66.7
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.9e-13 79.3 64 60.9
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 1.9e-13 79.3 68 52.9
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 1.9e-13 79.3 54 66.7
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 1.9e-13 79.3 54 66.7
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 2.5e-13 79.0 86 45.3
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 2.5e-13 79.0 81 46.9
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 2.5e-13 79.0 54 63.0
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 2.5e-13 79.0 54 64.8
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 3.2e-13 78.6 67 52.2
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 4.2e-13 78.2 55 60.0
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 4.2e-13 78.2 54 64.8
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 5.5e-13 77.8 54 64.8
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 7.2e-13 77.4 55 63.6
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 7.2e-13 77.4 64 59.4
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 7.2e-13 77.4 49 71.4
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 7.2e-13 77.4 82 46.3
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 7.2e-13 77.4 73 52.1
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 9.4e-13 77.0 50 72.0
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 9.4e-13 77.0 82 50.0
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 9.4e-13 77.0 54 63.0
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 9.4e-13 77.0 67 53.7
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 9.4e-13 77.0 55 61.8
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.2e-12 76.6 79 44.3
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 1.6e-12 76.3 100 40.0
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 1.6e-12 76.3 58 60.3
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 1.6e-12 76.3 59 57.6
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 1.6e-12 76.3 93 46.2
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 1.6e-12 76.3 94 43.6
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 2.1e-12 75.9 58 58.6
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 2.1e-12 75.9 49 69.4
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 2.1e-12 75.9 59 57.6
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 2.1e-12 75.9 59 61.0
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 2.1e-12 75.9 87 42.5
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 2.1e-12 75.9 54 61.1
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 2.1e-12 75.9 68 51.5
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 2.1e-12 75.9 74 48.6
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 2.7e-12 75.5 49 69.4
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 2.7e-12 75.5 49 69.4
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 2.7e-12 75.5 49 69.4
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 2.7e-12 75.5 49 69.4
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 2.7e-12 75.5 49 69.4
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 3.6e-12 75.1 50 68.0
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 3.6e-12 75.1 55 58.2
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 4.6e-12 74.7 49 69.4
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 4.6e-12 74.7 79 43.0
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 6.1e-12 74.3 67 47.8
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 6.1e-12 74.3 67 47.8
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 6.1e-12 74.3 76 48.7
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 7.9e-12 73.9 72 47.2
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 7.9e-12 73.9 56 55.4
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 7.9e-12 73.9 49 61.2
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 7.9e-12 73.9 83 44.6
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 1.4e-11 73.2 62 53.2
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 1.4e-11 73.2 82 45.1
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 1.4e-11 73.2 63 55.6
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 1.8e-11 72.8 55 65.5
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 1.8e-11 72.8 83 49.4
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 1.8e-11 72.8 57 52.6
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 2.3e-11 72.4 86 48.8
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 2.3e-11 72.4 54 59.3
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 2.3e-11 72.4 51 66.7
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 2.3e-11 72.4 63 52.4
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 2.3e-11 72.4 65 53.8
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 2.3e-11 72.4 60 51.7
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 3.0e-11 72.0 81 48.1
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 3.0e-11 72.0 49 61.2
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 3.9e-11 71.6 100 41.0
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.9e-11 71.6 76 46.1
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 3.9e-11 71.6 85 48.2
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 3.9e-11 71.6 49 65.3
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 5.1e-11 71.2 67 55.2
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 5.1e-11 71.2 54 55.6
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 8.8e-11 70.5 49 65.3
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 8.8e-11 70.5 49 59.2
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 1.1e-10 70.1 58 53.4
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.1e-10 70.1 100 40.0
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 1.1e-10 70.1 86 45.3
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 1.5e-10 69.7 95 41.1
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 1.5e-10 69.7 62 50.0
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 1.5e-10 69.7 82 48.8
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 1.5e-10 69.7 67 50.7
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.0e-10 69.3 67 55.2
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 2.0e-10 69.3 67 55.2
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 2.0e-10 69.3 50 58.0
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 3.3e-10 68.6 69 50.7
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 3.3e-10 68.6 58 53.4
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 5.7e-10 67.8 88 44.3
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 7.4e-10 67.4 50 56.0
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 9.7e-10 67.0 61 45.9
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 9.7e-10 67.0 61 45.9
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 1.3e-09 66.6 56 53.6
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.3e-09 66.6 88 43.2
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 1.7e-09 66.2 71 46.5
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 2.2e-09 65.9 71 47.9
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 1.8e-08 62.8 76 44.7
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 4.1e-08 61.6 54 51.9
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 1.7e-06 56.2 76 38.2
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 5.0e-06 54.7 48 45.8
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 8.5e-06 53.9 83 33.7


User provided reference genes

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