Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 6.1e-127 457.6 247 100.0
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 2.8e-31 139.8 72 88.9
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.3e-28 131.0 78 79.5
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 4.9e-28 129.0 80 76.2
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 6.0e-26 122.1 78 73.1
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 6.0e-26 122.1 78 73.1
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 1.8e-25 120.6 78 70.5
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 2.3e-25 120.2 78 71.8
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 3.0e-25 119.8 78 71.8
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 5.1e-25 119.0 77 71.4
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 6.7e-25 118.6 77 71.4
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 1.1e-24 117.9 77 71.4
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 1.1e-24 117.9 78 73.1
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 1.5e-24 117.5 77 71.4
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 1.5e-24 117.5 77 70.1
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 1.5e-24 117.5 77 70.1
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 1.5e-24 117.5 77 70.1
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.9e-24 117.1 78 70.5
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.9e-24 117.1 77 70.1
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 1.9e-24 117.1 77 71.4
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 2.5e-24 116.7 78 67.9
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 2.5e-24 116.7 78 67.9
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 2.5e-24 116.7 77 71.4
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 3.3e-24 116.3 78 70.5
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.3e-24 116.3 77 70.1
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 4.3e-24 115.9 79 72.2
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 4.3e-24 115.9 75 70.7
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 4.3e-24 115.9 79 68.4
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 4.3e-24 115.9 77 68.8
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 4.3e-24 115.9 77 70.1
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 4.3e-24 115.9 77 70.1
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 7.4e-24 115.2 77 68.8
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 7.4e-24 115.2 100 59.0
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 7.4e-24 115.2 77 70.1
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 9.6e-24 114.8 77 70.1
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 9.6e-24 114.8 77 68.8
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 1.3e-23 114.4 77 67.5
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 1.3e-23 114.4 77 70.1
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 1.3e-23 114.4 100 59.0
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 1.3e-23 114.4 78 66.7
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 1.3e-23 114.4 77 68.8
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 1.3e-23 114.4 77 71.4
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 1.6e-23 114.0 92 59.8
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 1.6e-23 114.0 77 70.1
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 1.6e-23 114.0 101 61.4
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.6e-23 114.0 100 60.0
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 2.1e-23 113.6 100 60.0
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 2.1e-23 113.6 77 70.1
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 2.1e-23 113.6 77 70.1
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 2.8e-23 113.2 100 61.0
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 2.8e-23 113.2 77 67.5
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 3.7e-23 112.8 79 69.6
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 3.7e-23 112.8 100 57.0
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.7e-23 112.8 100 57.0
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.7e-23 112.8 100 57.0
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.7e-23 112.8 100 57.0
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 3.7e-23 112.8 77 67.5
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 4.8e-23 112.5 77 68.8
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 4.8e-23 112.5 77 66.2
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 6.2e-23 112.1 100 56.0
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 6.2e-23 112.1 77 68.8
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 8.1e-23 111.7 100 59.0
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 8.1e-23 111.7 100 59.0
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 8.1e-23 111.7 100 58.0
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 1.1e-22 111.3 77 67.5
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 1.1e-22 111.3 77 67.5
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 1.1e-22 111.3 77 67.5
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 1.1e-22 111.3 77 67.5
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 1.1e-22 111.3 77 67.5
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 1.1e-22 111.3 77 67.5
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 1.1e-22 111.3 77 67.5
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 1.1e-22 111.3 77 66.2
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 1.1e-22 111.3 100 58.0
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 1.4e-22 110.9 77 67.5
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 1.4e-22 110.9 98 61.2
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 1.4e-22 110.9 79 67.1
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 1.4e-22 110.9 100 56.0
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 1.8e-22 110.5 77 62.3
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 1.8e-22 110.5 77 68.8
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 1.8e-22 110.5 79 64.6
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 1.8e-22 110.5 78 65.4
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 2.4e-22 110.2 77 64.9
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 3.1e-22 109.8 77 66.2
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 3.1e-22 109.8 78 66.7
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 3.1e-22 109.8 100 58.0
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 3.1e-22 109.8 100 56.0
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 3.1e-22 109.8 100 56.0
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 3.1e-22 109.8 78 66.7
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 4.0e-22 109.4 100 58.0
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 5.3e-22 109.0 100 57.0
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 6.9e-22 108.6 100 58.0
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 9.0e-22 108.2 78 66.7
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 9.0e-22 108.2 78 65.4
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 9.0e-22 108.2 66 71.2
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 1.5e-21 107.5 78 65.4
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 1.5e-21 107.5 77 66.2
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 2.0e-21 107.1 78 66.7
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 2.6e-21 106.7 101 56.4
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 3.4e-21 106.3 76 64.5
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 4.5e-21 105.9 78 64.1
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 5.8e-21 105.5 77 61.0
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 1.0e-20 104.8 73 68.5
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 1.0e-20 104.8 78 66.7
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 1.0e-20 104.8 77 62.3
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 1.3e-20 104.4 71 67.6
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 1.7e-20 104.0 71 71.8
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 2.2e-20 103.6 78 66.7
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 3.8e-20 102.8 78 64.1
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 3.8e-20 102.8 92 58.7
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 3.8e-20 102.8 78 61.5
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 4.9e-20 102.4 78 61.5
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 8.4e-20 101.7 92 56.5
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 1.1e-19 101.3 78 57.7
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 1.4e-19 100.9 75 64.0
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 1.9e-19 100.5 71 64.8
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.9e-19 100.5 71 67.6
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 7.1e-19 98.6 71 63.4
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 7.1e-19 98.6 71 63.4
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.2e-18 97.8 92 55.4
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 2.1e-18 97.1 60 68.3
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 2.1e-18 97.1 77 59.7
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 1.3e-17 94.4 100 49.0
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 1.3e-17 94.4 94 55.3
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 5.1e-17 92.4 75 61.3
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 6.7e-17 92.0 80 58.8
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 8.7e-17 91.7 80 57.5
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 8.7e-17 91.7 80 57.5
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 1.1e-16 91.3 75 60.0
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.5e-16 90.9 92 52.2
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.5e-16 90.9 92 52.2
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.9e-16 90.5 92 52.2
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 2.5e-16 90.1 77 50.6
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 2.5e-16 90.1 77 53.2
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 1.1e-14 84.7 78 52.6
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 1.0e-12 78.2 78 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 1.9e-11 73.9 91 46.2
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 1.2e-10 71.2 53 66.0
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.5e-10 69.7 66 53.0
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 1.3e-09 67.8 82 36.6


User provided reference genes

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